Result of FASTA (omim) for
pFN21AE1206
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1206, 126 aa
1>>>pF1KE1206 126 - 126 aa - 126 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4519+/-0.000319; mu= 10.9457+/- 0.020
mean_var=75.0667+/-14.815, 0's: 0 Z-trim(117.3): 29 B-trim: 766 in 2/56
Lambda= 0.148030
statistics sampled from 29076 (29107) to 29076 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.715), E-opt: 0.2 (0.341), width: 16
Scan time: 4.610
The best scores are: opt bits E(85289)
NP_066402 (OMIM: 615044) histone H2B type 1-J [Hom ( 126) 787 176.4 1e-44
NP_001299582 (OMIM: 615045) histone H2B type 1-K [ ( 126) 786 176.2 1.2e-44
NP_542160 (OMIM: 615045) histone H2B type 1-K [Hom ( 126) 786 176.2 1.2e-44
NP_003519 (OMIM: 601831) histone H2B type 2-E [Hom ( 126) 783 175.6 1.9e-44
NP_003509 (OMIM: 602798) histone H2B type 1-C/E/F/ ( 126) 782 175.4 2.2e-44
NP_003513 (OMIM: 602804) histone H2B type 1-C/E/F/ ( 126) 782 175.4 2.2e-44
NP_003517 (OMIM: 602847) histone H2B type 1-C/E/F/ ( 126) 782 175.4 2.2e-44
NP_003516 (OMIM: 602807) histone H2B type 1-C/E/F/ ( 126) 782 175.4 2.2e-44
NP_003514 (OMIM: 602805) histone H2B type 1-C/E/F/ ( 126) 782 175.4 2.2e-44
NP_003518 (OMIM: 602808) histone H2B type 1-O [Hom ( 126) 779 174.7 3.4e-44
NP_066406 (OMIM: 602803) histone H2B type 1-B [Hom ( 126) 778 174.5 3.9e-44
NP_003515 (OMIM: 602806) histone H2B type 1-H [Hom ( 126) 778 174.5 3.9e-44
NP_003511 (OMIM: 602801) histone H2B type 1-N [Hom ( 126) 778 174.5 3.9e-44
NP_066407 (OMIM: 602799) histone H2B type 1-D [Hom ( 126) 777 174.3 4.6e-44
NP_619790 (OMIM: 602799) histone H2B type 1-D [Hom ( 126) 777 174.3 4.6e-44
XP_005249096 (OMIM: 602799) PREDICTED: histone H2B ( 150) 777 174.4 5.3e-44
NP_003512 (OMIM: 602802) histone H2B type 1-M [Hom ( 126) 766 172.0 2.3e-43
NP_778225 (OMIM: 615046) histone H2B type 3-B [Hom ( 126) 761 170.9 4.9e-43
NP_003510 (OMIM: 602800) histone H2B type 1-L [Hom ( 126) 760 170.7 5.7e-43
NP_733759 (OMIM: 609904) histone H2B type 1-A [Hom ( 127) 663 150.0 9.8e-37
NP_001002916 (OMIM: 300507) histone H2B type W-T [ ( 175) 301 72.7 2.4e-13
>>NP_066402 (OMIM: 615044) histone H2B type 1-J [Homo sa (126 aa)
initn: 787 init1: 787 opt: 787 Z-score: 923.7 bits: 176.4 E(85289): 1e-44
Smith-Waterman score: 787; 100.0% identity (100.0% similar) in 126 aa overlap (1-126:1-126)
10 20 30 40 50 60
pF1KE1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
70 80 90 100 110 120
pF1KE1 KYTSAK
::::::
NP_066 KYTSAK
>>NP_001299582 (OMIM: 615045) histone H2B type 1-K [Homo (126 aa)
initn: 786 init1: 786 opt: 786 Z-score: 922.5 bits: 176.2 E(85289): 1.2e-44
Smith-Waterman score: 786; 99.2% identity (100.0% similar) in 126 aa overlap (1-126:1-126)
10 20 30 40 50 60
pF1KE1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAM
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
NP_001 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
70 80 90 100 110 120
pF1KE1 KYTSAK
::::::
NP_001 KYTSAK
>>NP_542160 (OMIM: 615045) histone H2B type 1-K [Homo sa (126 aa)
initn: 786 init1: 786 opt: 786 Z-score: 922.5 bits: 176.2 E(85289): 1.2e-44
Smith-Waterman score: 786; 99.2% identity (100.0% similar) in 126 aa overlap (1-126:1-126)
10 20 30 40 50 60
pF1KE1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAM
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
NP_542 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_542 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
70 80 90 100 110 120
pF1KE1 KYTSAK
::::::
NP_542 KYTSAK
>>NP_003519 (OMIM: 601831) histone H2B type 2-E [Homo sa (126 aa)
initn: 871 init1: 783 opt: 783 Z-score: 919.0 bits: 175.6 E(85289): 1.9e-44
Smith-Waterman score: 783; 99.2% identity (100.0% similar) in 126 aa overlap (1-126:1-126)
10 20 30 40 50 60
pF1KE1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
70 80 90 100 110 120
pF1KE1 KYTSAK
::::.:
NP_003 KYTSSK
>>NP_003509 (OMIM: 602798) histone H2B type 1-C/E/F/G/I (126 aa)
initn: 849 init1: 782 opt: 782 Z-score: 917.9 bits: 175.4 E(85289): 2.2e-44
Smith-Waterman score: 782; 98.4% identity (100.0% similar) in 126 aa overlap (1-126:1-126)
10 20 30 40 50 60
pF1KE1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAM
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
NP_003 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
70 80 90 100 110 120
pF1KE1 KYTSAK
::::.:
NP_003 KYTSSK
>>NP_003513 (OMIM: 602804) histone H2B type 1-C/E/F/G/I (126 aa)
initn: 849 init1: 782 opt: 782 Z-score: 917.9 bits: 175.4 E(85289): 2.2e-44
Smith-Waterman score: 782; 98.4% identity (100.0% similar) in 126 aa overlap (1-126:1-126)
10 20 30 40 50 60
pF1KE1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAM
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
NP_003 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
70 80 90 100 110 120
pF1KE1 KYTSAK
::::.:
NP_003 KYTSSK
>>NP_003517 (OMIM: 602847) histone H2B type 1-C/E/F/G/I (126 aa)
initn: 849 init1: 782 opt: 782 Z-score: 917.9 bits: 175.4 E(85289): 2.2e-44
Smith-Waterman score: 782; 98.4% identity (100.0% similar) in 126 aa overlap (1-126:1-126)
10 20 30 40 50 60
pF1KE1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAM
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
NP_003 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
70 80 90 100 110 120
pF1KE1 KYTSAK
::::.:
NP_003 KYTSSK
>>NP_003516 (OMIM: 602807) histone H2B type 1-C/E/F/G/I (126 aa)
initn: 849 init1: 782 opt: 782 Z-score: 917.9 bits: 175.4 E(85289): 2.2e-44
Smith-Waterman score: 782; 98.4% identity (100.0% similar) in 126 aa overlap (1-126:1-126)
10 20 30 40 50 60
pF1KE1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAM
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
NP_003 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
70 80 90 100 110 120
pF1KE1 KYTSAK
::::.:
NP_003 KYTSSK
>>NP_003514 (OMIM: 602805) histone H2B type 1-C/E/F/G/I (126 aa)
initn: 849 init1: 782 opt: 782 Z-score: 917.9 bits: 175.4 E(85289): 2.2e-44
Smith-Waterman score: 782; 98.4% identity (100.0% similar) in 126 aa overlap (1-126:1-126)
10 20 30 40 50 60
pF1KE1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAM
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
NP_003 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
70 80 90 100 110 120
pF1KE1 KYTSAK
::::.:
NP_003 KYTSSK
>>NP_003518 (OMIM: 602808) histone H2B type 1-O [Homo sa (126 aa)
initn: 867 init1: 779 opt: 779 Z-score: 914.4 bits: 174.7 E(85289): 3.4e-44
Smith-Waterman score: 779; 98.4% identity (100.0% similar) in 126 aa overlap (1-126:1-126)
10 20 30 40 50 60
pF1KE1 MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAM
::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MPDPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT
70 80 90 100 110 120
pF1KE1 KYTSAK
::::.:
NP_003 KYTSSK
126 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 16:54:41 2016 done: Sun Nov 6 16:54:41 2016
Total Scan time: 4.610 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]