Result of FASTA (omim) for pFN21AE3757
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3757, 395 aa
  1>>>pF1KE3757 395 - 395 aa - 395 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2290+/-0.000373; mu= 19.1367+/- 0.023
 mean_var=123.6832+/-25.994, 0's: 0 Z-trim(115.6): 127  B-trim: 0 in 0/56
 Lambda= 0.115324
 statistics sampled from 25929 (26085) to 25929 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.678), E-opt: 0.2 (0.306), width:  16
 Scan time:  9.030

The best scores are:                                      opt bits E(85289)
NP_940988 (OMIM: 254780,608072) E3 ubiquitin-prote ( 395) 2698 460.3 3.6e-129
NP_036342 (OMIM: 254110,602290,615988) E3 ubiquiti ( 653)  257 54.5 8.9e-07
NP_001093149 (OMIM: 254110,602290,615988) E3 ubiqu ( 653)  257 54.5 8.9e-07
XP_005251870 (OMIM: 254110,602290,615988) PREDICTE ( 653)  257 54.5 8.9e-07
XP_016869975 (OMIM: 254110,602290,615988) PREDICTE ( 653)  257 54.5 8.9e-07
XP_011516700 (OMIM: 254110,602290,615988) PREDICTE ( 653)  257 54.5 8.9e-07
XP_016863442 (OMIM: 614141,615490) PREDICTED: trip ( 623)  226 49.3 3.1e-05
XP_006714228 (OMIM: 614141,615490) PREDICTED: trip ( 623)  226 49.3 3.1e-05
XP_011530100 (OMIM: 614141,615490) PREDICTED: trip ( 748)  226 49.4 3.5e-05
XP_006714225 (OMIM: 614141,615490) PREDICTED: trip ( 748)  226 49.4 3.5e-05
XP_011530097 (OMIM: 614141,615490) PREDICTED: trip ( 748)  226 49.4 3.5e-05
XP_006714224 (OMIM: 614141,615490) PREDICTED: trip ( 748)  226 49.4 3.5e-05
XP_006714223 (OMIM: 614141,615490) PREDICTED: trip ( 748)  226 49.4 3.5e-05
XP_011530098 (OMIM: 614141,615490) PREDICTED: trip ( 748)  226 49.4 3.5e-05
XP_011530096 (OMIM: 614141,615490) PREDICTED: trip ( 765)  226 49.4 3.5e-05
XP_006714222 (OMIM: 614141,615490) PREDICTED: trip ( 766)  226 49.4 3.5e-05
XP_006714221 (OMIM: 614141,615490) PREDICTED: trip ( 774)  226 49.4 3.5e-05
XP_006714220 (OMIM: 614141,615490) PREDICTED: trip ( 775)  226 49.4 3.5e-05
XP_016863443 (OMIM: 614141,615490) PREDICTED: trip ( 619)  196 44.3 0.00098
XP_016863444 (OMIM: 614141,615490) PREDICTED: trip ( 619)  196 44.3 0.00098
XP_016863434 (OMIM: 614141,615490) PREDICTED: trip ( 744)  196 44.4  0.0011
XP_016863438 (OMIM: 614141,615490) PREDICTED: trip ( 744)  196 44.4  0.0011
XP_016863440 (OMIM: 614141,615490) PREDICTED: trip ( 744)  196 44.4  0.0011
XP_016863441 (OMIM: 614141,615490) PREDICTED: trip ( 744)  196 44.4  0.0011
XP_016863439 (OMIM: 614141,615490) PREDICTED: trip ( 744)  196 44.4  0.0011
XP_016863433 (OMIM: 614141,615490) PREDICTED: trip ( 744)  196 44.4  0.0011
NP_001123539 (OMIM: 614141,615490) tripartite moti ( 744)  196 44.4  0.0011
XP_016863437 (OMIM: 614141,615490) PREDICTED: trip ( 744)  196 44.4  0.0011
XP_016863436 (OMIM: 614141,615490) PREDICTED: trip ( 761)  196 44.4  0.0011
XP_016863435 (OMIM: 614141,615490) PREDICTED: trip ( 762)  196 44.4  0.0011
XP_016863432 (OMIM: 614141,615490) PREDICTED: trip ( 770)  196 44.4  0.0011
NP_056086 (OMIM: 614141,615490) tripartite motif-c ( 771)  196 44.4  0.0011


>>NP_940988 (OMIM: 254780,608072) E3 ubiquitin-protein l  (395 aa)
 initn: 2698 init1: 2698 opt: 2698  Z-score: 2439.9  bits: 460.3 E(85289): 3.6e-129
Smith-Waterman score: 2698; 100.0% identity (100.0% similar) in 395 aa overlap (1-395:1-395)

               10        20        30        40        50        60
pF1KE3 MAAEASESGPALHELMREAEISLLECKVCFEKFGHRQQRRPRNLSCGHVVCLACVAALAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_940 MAAEASESGPALHELMREAEISLLECKVCFEKFGHRQQRRPRNLSCGHVVCLACVAALAH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 PRTLALECPFCRRACRGCDTSDCLPVLHLIELLGSALRQSPAAHRAAPSAPGALTCHHTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_940 PRTLALECPFCRRACRGCDTSDCLPVLHLIELLGSALRQSPAAHRAAPSAPGALTCHHTF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 GGWGTLVNPTGLALCPKTGRVVVVHDGRRRVKIFDSGGGCAHQFGEKGDAAQDIRYPVDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_940 GGWGTLVNPTGLALCPKTGRVVVVHDGRRRVKIFDSGGGCAHQFGEKGDAAQDIRYPVDV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 TITNDCHVVVTDAGDRSIKVFDFFGQIKLVIGGQFSLPWGVETTPQNGIVVTDAEAGSLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_940 TITNDCHVVVTDAGDRSIKVFDFFGQIKLVIGGQFSLPWGVETTPQNGIVVTDAEAGSLH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 LLDVDFAEGVLRRTERLQAHLCNPRGVAVSWLTGAIAVLEHPLALGTGVCSTRVKVFSSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_940 LLDVDFAEGVLRRTERLQAHLCNPRGVAVSWLTGAIAVLEHPLALGTGVCSTRVKVFSSS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 MQLVGQVDTFGLSLYFPSKITASAVTFDHQGNVIVADTSGPAILCLGKPEEFPVPKPMVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_940 MQLVGQVDTFGLSLYFPSKITASAVTFDHQGNVIVADTSGPAILCLGKPEEFPVPKPMVT
              310       320       330       340       350       360

              370       380       390     
pF1KE3 HGLSHPVALTFTKENSLLVLDTASHSIKVYKVDWG
       :::::::::::::::::::::::::::::::::::
NP_940 HGLSHPVALTFTKENSLLVLDTASHSIKVYKVDWG
              370       380       390     

>>NP_036342 (OMIM: 254110,602290,615988) E3 ubiquitin-pr  (653 aa)
 initn: 369 init1: 151 opt: 257  Z-score: 242.6  bits: 54.5 E(85289): 8.9e-07
Smith-Waterman score: 321; 27.2% identity (55.1% similar) in 412 aa overlap (16-390:246-643)

                              10        20        30        40     
pF1KE3                MAAEASESGPALHELMREAEISLLECKVCFEKFGHRQQRRPRNLS
                                     ...:...::: ..  :.  .     ::.:.
NP_036 SNSQVVEEQSYLLNIAEVQAVSRCDYFLAKIKQADVALLE-ETADEEEPELTASLPRELT
         220       230       240       250        260       270    

                  50        60        70         80        90      
pF1KE3 --------CGHVVCLACVAALAHPRTLALECPFCRRAC-RGCDTSDCLPVLHLI--ELLG
                :::  :    :. .:::. .:  .  .:   . .::  .  . .   :...
NP_036 LQDVELLKVGHVGPLQIGQAVKKPRTVNVEDSWAMEATASAASTSVTFREMDMSPEEVVA
          280       290       300       310       320       330    

          100       110         120           130       140        
pF1KE3 SALRQSPAAHRAAPSAPGALTCH--HTFGGWGT---LVN-PTGLALCPKTGRVVVVHDGR
       :  : ::: .:.  .: .   :   . .:. :.   . : :..: .  . :.:.:.  : 
NP_036 SP-RASPAKQRGPEAASNIQQCLFLKKMGAKGSTPGMFNLPVSLYVTSQ-GEVLVADRGN
           340       350       360       370       380        390  

      150       160         170             180         190        
pF1KE3 RRVKIFDSGGGCAH-QFGEKG-DA------AQDIRYPVDVTITNDCH--VVVTDAGDRSI
        :...:   :   . . . .: :.      . :.   . .... .:.  . :::. : :.
NP_036 YRIQVFTRKGFLKEIRRSPSGIDSFVLSFLGADLPNLTPLSVAMNCQGLIGVTDSYDNSL
            400       410       420       430       440       450  

      200       210       220       230       240       250        
pF1KE3 KVFDFFGQIKLVIGGQFSLPWGVETTPQNGIVVTDAEAGSLHLLDVDFAEGVLRRTE---
       ::. . :.      .:.: :::. . :.. .::::.:.:.:  . :: . ::.. .    
NP_036 KVYTLDGHCVACHRSQLSKPWGITALPSGQFVVTDVEGGKLWCFTVDRGSGVVKYSCLCS
            460       470       480       490       500       510  

           260       270       280            290       300        
pF1KE3 --RLQAHLCNPRGVAVSWLTGAIAVLE-----HPLALGTGVCSTRVKVFSSSMQLVGQVD
         : .   :. .:. : .  :    ::     : :  : .. :.     . . ::  :..
NP_036 AVRPKFVTCDAEGT-VYFTQGLGLNLENRQNEHHLEGGFSIGSV-----GPDGQLGRQIS
            520        530       540       550            560      

      310       320       330       340       350       360        
pF1KE3 TFGLSLYFPSKITASAVTFDHQGNVIVADTSGPAILCLGKPEEFPVPKPMVTHGLSHPVA
        : .:     .  :. .  : .:..::::.:   :: . :   . :   .. .::. ::.
NP_036 HF-FSENEDFRCIAG-MCVDARGDLIVADSSRKEILHFPKGGGYSV---LIREGLTCPVG
         570       580        590       600       610          620 

      370       380       390          
pF1KE3 LTFTKENSLLVLDTASHSIKVYKVDWG     
       ...: ...:::::  .: ::.:          
NP_036 IALTPKGQLLVLDCWDHCIKIYSYHLRRYSTP
             630       640       650   

>>NP_001093149 (OMIM: 254110,602290,615988) E3 ubiquitin  (653 aa)
 initn: 369 init1: 151 opt: 257  Z-score: 242.6  bits: 54.5 E(85289): 8.9e-07
Smith-Waterman score: 321; 27.2% identity (55.1% similar) in 412 aa overlap (16-390:246-643)

                              10        20        30        40     
pF1KE3                MAAEASESGPALHELMREAEISLLECKVCFEKFGHRQQRRPRNLS
                                     ...:...::: ..  :.  .     ::.:.
NP_001 SNSQVVEEQSYLLNIAEVQAVSRCDYFLAKIKQADVALLE-ETADEEEPELTASLPRELT
         220       230       240       250        260       270    

                  50        60        70         80        90      
pF1KE3 --------CGHVVCLACVAALAHPRTLALECPFCRRAC-RGCDTSDCLPVLHLI--ELLG
                :::  :    :. .:::. .:  .  .:   . .::  .  . .   :...
NP_001 LQDVELLKVGHVGPLQIGQAVKKPRTVNVEDSWAMEATASAASTSVTFREMDMSPEEVVA
          280       290       300       310       320       330    

          100       110         120           130       140        
pF1KE3 SALRQSPAAHRAAPSAPGALTCH--HTFGGWGT---LVN-PTGLALCPKTGRVVVVHDGR
       :  : ::: .:.  .: .   :   . .:. :.   . : :..: .  . :.:.:.  : 
NP_001 SP-RASPAKQRGPEAASNIQQCLFLKKMGAKGSTPGMFNLPVSLYVTSQ-GEVLVADRGN
           340       350       360       370       380        390  

      150       160         170             180         190        
pF1KE3 RRVKIFDSGGGCAH-QFGEKG-DA------AQDIRYPVDVTITNDCH--VVVTDAGDRSI
        :...:   :   . . . .: :.      . :.   . .... .:.  . :::. : :.
NP_001 YRIQVFTRKGFLKEIRRSPSGIDSFVLSFLGADLPNLTPLSVAMNCQGLIGVTDSYDNSL
            400       410       420       430       440       450  

      200       210       220       230       240       250        
pF1KE3 KVFDFFGQIKLVIGGQFSLPWGVETTPQNGIVVTDAEAGSLHLLDVDFAEGVLRRTE---
       ::. . :.      .:.: :::. . :.. .::::.:.:.:  . :: . ::.. .    
NP_001 KVYTLDGHCVACHRSQLSKPWGITALPSGQFVVTDVEGGKLWCFTVDRGSGVVKYSCLCS
            460       470       480       490       500       510  

           260       270       280            290       300        
pF1KE3 --RLQAHLCNPRGVAVSWLTGAIAVLE-----HPLALGTGVCSTRVKVFSSSMQLVGQVD
         : .   :. .:. : .  :    ::     : :  : .. :.     . . ::  :..
NP_001 AVRPKFVTCDAEGT-VYFTQGLGLNLENRQNEHHLEGGFSIGSV-----GPDGQLGRQIS
            520        530       540       550            560      

      310       320       330       340       350       360        
pF1KE3 TFGLSLYFPSKITASAVTFDHQGNVIVADTSGPAILCLGKPEEFPVPKPMVTHGLSHPVA
        : .:     .  :. .  : .:..::::.:   :: . :   . :   .. .::. ::.
NP_001 HF-FSENEDFRCIAG-MCVDARGDLIVADSSRKEILHFPKGGGYSV---LIREGLTCPVG
         570       580        590       600       610          620 

      370       380       390          
pF1KE3 LTFTKENSLLVLDTASHSIKVYKVDWG     
       ...: ...:::::  .: ::.:          
NP_001 IALTPKGQLLVLDCWDHCIKIYSYHLRRYSTP
             630       640       650   

>>XP_005251870 (OMIM: 254110,602290,615988) PREDICTED: E  (653 aa)
 initn: 369 init1: 151 opt: 257  Z-score: 242.6  bits: 54.5 E(85289): 8.9e-07
Smith-Waterman score: 321; 27.2% identity (55.1% similar) in 412 aa overlap (16-390:246-643)

                              10        20        30        40     
pF1KE3                MAAEASESGPALHELMREAEISLLECKVCFEKFGHRQQRRPRNLS
                                     ...:...::: ..  :.  .     ::.:.
XP_005 SNSQVVEEQSYLLNIAEVQAVSRCDYFLAKIKQADVALLE-ETADEEEPELTASLPRELT
         220       230       240       250        260       270    

                  50        60        70         80        90      
pF1KE3 --------CGHVVCLACVAALAHPRTLALECPFCRRAC-RGCDTSDCLPVLHLI--ELLG
                :::  :    :. .:::. .:  .  .:   . .::  .  . .   :...
XP_005 LQDVELLKVGHVGPLQIGQAVKKPRTVNVEDSWAMEATASAASTSVTFREMDMSPEEVVA
          280       290       300       310       320       330    

          100       110         120           130       140        
pF1KE3 SALRQSPAAHRAAPSAPGALTCH--HTFGGWGT---LVN-PTGLALCPKTGRVVVVHDGR
       :  : ::: .:.  .: .   :   . .:. :.   . : :..: .  . :.:.:.  : 
XP_005 SP-RASPAKQRGPEAASNIQQCLFLKKMGAKGSTPGMFNLPVSLYVTSQ-GEVLVADRGN
           340       350       360       370       380        390  

      150       160         170             180         190        
pF1KE3 RRVKIFDSGGGCAH-QFGEKG-DA------AQDIRYPVDVTITNDCH--VVVTDAGDRSI
        :...:   :   . . . .: :.      . :.   . .... .:.  . :::. : :.
XP_005 YRIQVFTRKGFLKEIRRSPSGIDSFVLSFLGADLPNLTPLSVAMNCQGLIGVTDSYDNSL
            400       410       420       430       440       450  

      200       210       220       230       240       250        
pF1KE3 KVFDFFGQIKLVIGGQFSLPWGVETTPQNGIVVTDAEAGSLHLLDVDFAEGVLRRTE---
       ::. . :.      .:.: :::. . :.. .::::.:.:.:  . :: . ::.. .    
XP_005 KVYTLDGHCVACHRSQLSKPWGITALPSGQFVVTDVEGGKLWCFTVDRGSGVVKYSCLCS
            460       470       480       490       500       510  

           260       270       280            290       300        
pF1KE3 --RLQAHLCNPRGVAVSWLTGAIAVLE-----HPLALGTGVCSTRVKVFSSSMQLVGQVD
         : .   :. .:. : .  :    ::     : :  : .. :.     . . ::  :..
XP_005 AVRPKFVTCDAEGT-VYFTQGLGLNLENRQNEHHLEGGFSIGSV-----GPDGQLGRQIS
            520        530       540       550            560      

      310       320       330       340       350       360        
pF1KE3 TFGLSLYFPSKITASAVTFDHQGNVIVADTSGPAILCLGKPEEFPVPKPMVTHGLSHPVA
        : .:     .  :. .  : .:..::::.:   :: . :   . :   .. .::. ::.
XP_005 HF-FSENEDFRCIAG-MCVDARGDLIVADSSRKEILHFPKGGGYSV---LIREGLTCPVG
         570       580        590       600       610          620 

      370       380       390          
pF1KE3 LTFTKENSLLVLDTASHSIKVYKVDWG     
       ...: ...:::::  .: ::.:          
XP_005 IALTPKGQLLVLDCWDHCIKIYSYHLRRYSTP
             630       640       650   

>>XP_016869975 (OMIM: 254110,602290,615988) PREDICTED: E  (653 aa)
 initn: 369 init1: 151 opt: 257  Z-score: 242.6  bits: 54.5 E(85289): 8.9e-07
Smith-Waterman score: 321; 27.2% identity (55.1% similar) in 412 aa overlap (16-390:246-643)

                              10        20        30        40     
pF1KE3                MAAEASESGPALHELMREAEISLLECKVCFEKFGHRQQRRPRNLS
                                     ...:...::: ..  :.  .     ::.:.
XP_016 SNSQVVEEQSYLLNIAEVQAVSRCDYFLAKIKQADVALLE-ETADEEEPELTASLPRELT
         220       230       240       250        260       270    

                  50        60        70         80        90      
pF1KE3 --------CGHVVCLACVAALAHPRTLALECPFCRRAC-RGCDTSDCLPVLHLI--ELLG
                :::  :    :. .:::. .:  .  .:   . .::  .  . .   :...
XP_016 LQDVELLKVGHVGPLQIGQAVKKPRTVNVEDSWAMEATASAASTSVTFREMDMSPEEVVA
          280       290       300       310       320       330    

          100       110         120           130       140        
pF1KE3 SALRQSPAAHRAAPSAPGALTCH--HTFGGWGT---LVN-PTGLALCPKTGRVVVVHDGR
       :  : ::: .:.  .: .   :   . .:. :.   . : :..: .  . :.:.:.  : 
XP_016 SP-RASPAKQRGPEAASNIQQCLFLKKMGAKGSTPGMFNLPVSLYVTSQ-GEVLVADRGN
           340       350       360       370       380        390  

      150       160         170             180         190        
pF1KE3 RRVKIFDSGGGCAH-QFGEKG-DA------AQDIRYPVDVTITNDCH--VVVTDAGDRSI
        :...:   :   . . . .: :.      . :.   . .... .:.  . :::. : :.
XP_016 YRIQVFTRKGFLKEIRRSPSGIDSFVLSFLGADLPNLTPLSVAMNCQGLIGVTDSYDNSL
            400       410       420       430       440       450  

      200       210       220       230       240       250        
pF1KE3 KVFDFFGQIKLVIGGQFSLPWGVETTPQNGIVVTDAEAGSLHLLDVDFAEGVLRRTE---
       ::. . :.      .:.: :::. . :.. .::::.:.:.:  . :: . ::.. .    
XP_016 KVYTLDGHCVACHRSQLSKPWGITALPSGQFVVTDVEGGKLWCFTVDRGSGVVKYSCLCS
            460       470       480       490       500       510  

           260       270       280            290       300        
pF1KE3 --RLQAHLCNPRGVAVSWLTGAIAVLE-----HPLALGTGVCSTRVKVFSSSMQLVGQVD
         : .   :. .:. : .  :    ::     : :  : .. :.     . . ::  :..
XP_016 AVRPKFVTCDAEGT-VYFTQGLGLNLENRQNEHHLEGGFSIGSV-----GPDGQLGRQIS
            520        530       540       550            560      

      310       320       330       340       350       360        
pF1KE3 TFGLSLYFPSKITASAVTFDHQGNVIVADTSGPAILCLGKPEEFPVPKPMVTHGLSHPVA
        : .:     .  :. .  : .:..::::.:   :: . :   . :   .. .::. ::.
XP_016 HF-FSENEDFRCIAG-MCVDARGDLIVADSSRKEILHFPKGGGYSV---LIREGLTCPVG
         570       580        590       600       610          620 

      370       380       390          
pF1KE3 LTFTKENSLLVLDTASHSIKVYKVDWG     
       ...: ...:::::  .: ::.:          
XP_016 IALTPKGQLLVLDCWDHCIKIYSYHLRRYSTP
             630       640       650   

>>XP_011516700 (OMIM: 254110,602290,615988) PREDICTED: E  (653 aa)
 initn: 369 init1: 151 opt: 257  Z-score: 242.6  bits: 54.5 E(85289): 8.9e-07
Smith-Waterman score: 321; 27.2% identity (55.1% similar) in 412 aa overlap (16-390:246-643)

                              10        20        30        40     
pF1KE3                MAAEASESGPALHELMREAEISLLECKVCFEKFGHRQQRRPRNLS
                                     ...:...::: ..  :.  .     ::.:.
XP_011 SNSQVVEEQSYLLNIAEVQAVSRCDYFLAKIKQADVALLE-ETADEEEPELTASLPRELT
         220       230       240       250        260       270    

                  50        60        70         80        90      
pF1KE3 --------CGHVVCLACVAALAHPRTLALECPFCRRAC-RGCDTSDCLPVLHLI--ELLG
                :::  :    :. .:::. .:  .  .:   . .::  .  . .   :...
XP_011 LQDVELLKVGHVGPLQIGQAVKKPRTVNVEDSWAMEATASAASTSVTFREMDMSPEEVVA
          280       290       300       310       320       330    

          100       110         120           130       140        
pF1KE3 SALRQSPAAHRAAPSAPGALTCH--HTFGGWGT---LVN-PTGLALCPKTGRVVVVHDGR
       :  : ::: .:.  .: .   :   . .:. :.   . : :..: .  . :.:.:.  : 
XP_011 SP-RASPAKQRGPEAASNIQQCLFLKKMGAKGSTPGMFNLPVSLYVTSQ-GEVLVADRGN
           340       350       360       370       380        390  

      150       160         170             180         190        
pF1KE3 RRVKIFDSGGGCAH-QFGEKG-DA------AQDIRYPVDVTITNDCH--VVVTDAGDRSI
        :...:   :   . . . .: :.      . :.   . .... .:.  . :::. : :.
XP_011 YRIQVFTRKGFLKEIRRSPSGIDSFVLSFLGADLPNLTPLSVAMNCQGLIGVTDSYDNSL
            400       410       420       430       440       450  

      200       210       220       230       240       250        
pF1KE3 KVFDFFGQIKLVIGGQFSLPWGVETTPQNGIVVTDAEAGSLHLLDVDFAEGVLRRTE---
       ::. . :.      .:.: :::. . :.. .::::.:.:.:  . :: . ::.. .    
XP_011 KVYTLDGHCVACHRSQLSKPWGITALPSGQFVVTDVEGGKLWCFTVDRGSGVVKYSCLCS
            460       470       480       490       500       510  

           260       270       280            290       300        
pF1KE3 --RLQAHLCNPRGVAVSWLTGAIAVLE-----HPLALGTGVCSTRVKVFSSSMQLVGQVD
         : .   :. .:. : .  :    ::     : :  : .. :.     . . ::  :..
XP_011 AVRPKFVTCDAEGT-VYFTQGLGLNLENRQNEHHLEGGFSIGSV-----GPDGQLGRQIS
            520        530       540       550            560      

      310       320       330       340       350       360        
pF1KE3 TFGLSLYFPSKITASAVTFDHQGNVIVADTSGPAILCLGKPEEFPVPKPMVTHGLSHPVA
        : .:     .  :. .  : .:..::::.:   :: . :   . :   .. .::. ::.
XP_011 HF-FSENEDFRCIAG-MCVDARGDLIVADSSRKEILHFPKGGGYSV---LIREGLTCPVG
         570       580        590       600       610          620 

      370       380       390          
pF1KE3 LTFTKENSLLVLDTASHSIKVYKVDWG     
       ...: ...:::::  .: ::.:          
XP_011 IALTPKGQLLVLDCWDHCIKIYSYHLRRYSTP
             630       640       650   

>>XP_016863442 (OMIM: 614141,615490) PREDICTED: triparti  (623 aa)
 initn: 163 init1:  86 opt: 226  Z-score: 215.0  bits: 49.3 E(85289): 3.1e-05
Smith-Waterman score: 226; 24.2% identity (58.2% similar) in 273 aa overlap (124-391:359-620)

           100       110       120       130       140       150   
pF1KE3 GSALRQSPAAHRAAPSAPGALTCHHTFGGWGTLVNPTGLALCPKTGRVVVVHDGRRRVKI
                                     : ..:  :.:    .:..... .. . :.:
XP_016 PASMYSTGKRKENPIEDDLIFRVGTKGRNKGEFTNLQGVA-ASTNGKILIADSNNQCVQI
      330       340       350       360        370       380       

           160       170       180       190       200       210   
pF1KE3 FDSGGGCAHQFGEKGDAAQDIRYPVDVTITNDCHVVVTDAGDRSIKVFDFFGQIKLVIG-
       :.. :    .:: .: .  ... :. :..  .  ....:  .. ...:.  :..:  :: 
XP_016 FSNDGQFKSRFGIRGRSPGQLQRPTGVAVHPSGDIIIADYDNKWVSIFSSDGKFKTKIGS
       390       400       410       420       430       440       

            220        230       240       250       260       270 
pF1KE3 GQFSLPWGVETTPQNG-IVVTDAEAGSLHLLDVDFAEGVLRRTERLQAHLCNPRGVAVSW
       :..  : :: .. .:: :.:.: .:  . ... .   :  . . :. ..  . :  : . 
XP_016 GKLMGPKGV-SVDRNGHIIVVDNKACCVFIFQPN---G--KIVTRFGSRGNGDRQFAGT-
       450        460       470       480            490       500 

               280       290       300       310       320         
pF1KE3 LTGA--IAVLEHPLALGTGVCSTRVKVFSSSMQLVGQVDTFGLSLYFPSKITA-SAVTFD
       : :    ::  .   . :   .  ::::..  ... .   :: .    ....: ..:. :
XP_016 LDGPHFAAVNSNNEIIITDFHNHSVKVFNQEGEFMLK---FGSNGEGNGQFNAPTGVAVD
              510       520       530          540       550       

      330       340       350       360       370       380        
pF1KE3 HQGNVIVADTSGPAILCLGKPEEFPVPKPMVTHGLSHPVALTFTKENSLLVLDTASHSIK
        .::.:::: ..  :  .     :       .  :  : .:..:... ..: :...: .:
XP_016 SNGNIIVADWGNSRIQVFDGSGSFLSYINTSADPLYGPQGLALTSDGHVVVADSGNHCFK
       560       570       580       590       600       610       

      390     
pF1KE3 VYKVDWG
       ::.    
XP_016 VYRYLQ 
       620    

>>XP_006714228 (OMIM: 614141,615490) PREDICTED: triparti  (623 aa)
 initn: 163 init1:  86 opt: 226  Z-score: 215.0  bits: 49.3 E(85289): 3.1e-05
Smith-Waterman score: 226; 24.2% identity (58.2% similar) in 273 aa overlap (124-391:359-620)

           100       110       120       130       140       150   
pF1KE3 GSALRQSPAAHRAAPSAPGALTCHHTFGGWGTLVNPTGLALCPKTGRVVVVHDGRRRVKI
                                     : ..:  :.:    .:..... .. . :.:
XP_006 PASMYSTGKRKENPIEDDLIFRVGTKGRNKGEFTNLQGVA-ASTNGKILIADSNNQCVQI
      330       340       350       360        370       380       

           160       170       180       190       200       210   
pF1KE3 FDSGGGCAHQFGEKGDAAQDIRYPVDVTITNDCHVVVTDAGDRSIKVFDFFGQIKLVIG-
       :.. :    .:: .: .  ... :. :..  .  ....:  .. ...:.  :..:  :: 
XP_006 FSNDGQFKSRFGIRGRSPGQLQRPTGVAVHPSGDIIIADYDNKWVSIFSSDGKFKTKIGS
       390       400       410       420       430       440       

            220        230       240       250       260       270 
pF1KE3 GQFSLPWGVETTPQNG-IVVTDAEAGSLHLLDVDFAEGVLRRTERLQAHLCNPRGVAVSW
       :..  : :: .. .:: :.:.: .:  . ... .   :  . . :. ..  . :  : . 
XP_006 GKLMGPKGV-SVDRNGHIIVVDNKACCVFIFQPN---G--KIVTRFGSRGNGDRQFAGT-
       450        460       470       480            490       500 

               280       290       300       310       320         
pF1KE3 LTGA--IAVLEHPLALGTGVCSTRVKVFSSSMQLVGQVDTFGLSLYFPSKITA-SAVTFD
       : :    ::  .   . :   .  ::::..  ... .   :: .    ....: ..:. :
XP_006 LDGPHFAAVNSNNEIIITDFHNHSVKVFNQEGEFMLK---FGSNGEGNGQFNAPTGVAVD
              510       520       530          540       550       

      330       340       350       360       370       380        
pF1KE3 HQGNVIVADTSGPAILCLGKPEEFPVPKPMVTHGLSHPVALTFTKENSLLVLDTASHSIK
        .::.:::: ..  :  .     :       .  :  : .:..:... ..: :...: .:
XP_006 SNGNIIVADWGNSRIQVFDGSGSFLSYINTSADPLYGPQGLALTSDGHVVVADSGNHCFK
       560       570       580       590       600       610       

      390     
pF1KE3 VYKVDWG
       ::.    
XP_006 VYRYLQ 
       620    

>>XP_011530100 (OMIM: 614141,615490) PREDICTED: triparti  (748 aa)
 initn: 192 init1:  86 opt: 226  Z-score: 214.1  bits: 49.4 E(85289): 3.5e-05
Smith-Waterman score: 226; 24.2% identity (58.2% similar) in 273 aa overlap (124-391:484-745)

           100       110       120       130       140       150   
pF1KE3 GSALRQSPAAHRAAPSAPGALTCHHTFGGWGTLVNPTGLALCPKTGRVVVVHDGRRRVKI
                                     : ..:  :.:    .:..... .. . :.:
XP_011 PASMYSTGKRKENPIEDDLIFRVGTKGRNKGEFTNLQGVA-ASTNGKILIADSNNQCVQI
           460       470       480       490        500       510  

           160       170       180       190       200       210   
pF1KE3 FDSGGGCAHQFGEKGDAAQDIRYPVDVTITNDCHVVVTDAGDRSIKVFDFFGQIKLVIG-
       :.. :    .:: .: .  ... :. :..  .  ....:  .. ...:.  :..:  :: 
XP_011 FSNDGQFKSRFGIRGRSPGQLQRPTGVAVHPSGDIIIADYDNKWVSIFSSDGKFKTKIGS
            520       530       540       550       560       570  

            220        230       240       250       260       270 
pF1KE3 GQFSLPWGVETTPQNG-IVVTDAEAGSLHLLDVDFAEGVLRRTERLQAHLCNPRGVAVSW
       :..  : :: .. .:: :.:.: .:  . ... .   :  . . :. ..  . :  : . 
XP_011 GKLMGPKGV-SVDRNGHIIVVDNKACCVFIFQPN---G--KIVTRFGSRGNGDRQFAGT-
            580        590       600            610       620      

               280       290       300       310       320         
pF1KE3 LTGA--IAVLEHPLALGTGVCSTRVKVFSSSMQLVGQVDTFGLSLYFPSKITA-SAVTFD
       : :    ::  .   . :   .  ::::..  ... .   :: .    ....: ..:. :
XP_011 LDGPHFAAVNSNNEIIITDFHNHSVKVFNQEGEFMLK---FGSNGEGNGQFNAPTGVAVD
         630       640       650       660          670       680  

      330       340       350       360       370       380        
pF1KE3 HQGNVIVADTSGPAILCLGKPEEFPVPKPMVTHGLSHPVALTFTKENSLLVLDTASHSIK
        .::.:::: ..  :  .     :       .  :  : .:..:... ..: :...: .:
XP_011 SNGNIIVADWGNSRIQVFDGSGSFLSYINTSADPLYGPQGLALTSDGHVVVADSGNHCFK
            690       700       710       720       730       740  

      390     
pF1KE3 VYKVDWG
       ::.    
XP_011 VYRYLQ 
              

>>XP_006714225 (OMIM: 614141,615490) PREDICTED: triparti  (748 aa)
 initn: 192 init1:  86 opt: 226  Z-score: 214.1  bits: 49.4 E(85289): 3.5e-05
Smith-Waterman score: 226; 24.2% identity (58.2% similar) in 273 aa overlap (124-391:484-745)

           100       110       120       130       140       150   
pF1KE3 GSALRQSPAAHRAAPSAPGALTCHHTFGGWGTLVNPTGLALCPKTGRVVVVHDGRRRVKI
                                     : ..:  :.:    .:..... .. . :.:
XP_006 PASMYSTGKRKENPIEDDLIFRVGTKGRNKGEFTNLQGVA-ASTNGKILIADSNNQCVQI
           460       470       480       490        500       510  

           160       170       180       190       200       210   
pF1KE3 FDSGGGCAHQFGEKGDAAQDIRYPVDVTITNDCHVVVTDAGDRSIKVFDFFGQIKLVIG-
       :.. :    .:: .: .  ... :. :..  .  ....:  .. ...:.  :..:  :: 
XP_006 FSNDGQFKSRFGIRGRSPGQLQRPTGVAVHPSGDIIIADYDNKWVSIFSSDGKFKTKIGS
            520       530       540       550       560       570  

            220        230       240       250       260       270 
pF1KE3 GQFSLPWGVETTPQNG-IVVTDAEAGSLHLLDVDFAEGVLRRTERLQAHLCNPRGVAVSW
       :..  : :: .. .:: :.:.: .:  . ... .   :  . . :. ..  . :  : . 
XP_006 GKLMGPKGV-SVDRNGHIIVVDNKACCVFIFQPN---G--KIVTRFGSRGNGDRQFAGT-
            580        590       600            610       620      

               280       290       300       310       320         
pF1KE3 LTGA--IAVLEHPLALGTGVCSTRVKVFSSSMQLVGQVDTFGLSLYFPSKITA-SAVTFD
       : :    ::  .   . :   .  ::::..  ... .   :: .    ....: ..:. :
XP_006 LDGPHFAAVNSNNEIIITDFHNHSVKVFNQEGEFMLK---FGSNGEGNGQFNAPTGVAVD
         630       640       650       660          670       680  

      330       340       350       360       370       380        
pF1KE3 HQGNVIVADTSGPAILCLGKPEEFPVPKPMVTHGLSHPVALTFTKENSLLVLDTASHSIK
        .::.:::: ..  :  .     :       .  :  : .:..:... ..: :...: .:
XP_006 SNGNIIVADWGNSRIQVFDGSGSFLSYINTSADPLYGPQGLALTSDGHVVVADSGNHCFK
            690       700       710       720       730       740  

      390     
pF1KE3 VYKVDWG
       ::.    
XP_006 VYRYLQ 
              




395 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 07:42:34 2016 done: Sun Nov  6 07:42:35 2016
 Total Scan time:  9.030 Total Display time:  0.050

Function used was FASTA [36.3.4 Apr, 2011]
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