FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3757, 395 aa 1>>>pF1KE3757 395 - 395 aa - 395 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.0257+/-0.000894; mu= 14.1785+/- 0.053 mean_var=107.8547+/-22.927, 0's: 0 Z-trim(109.1): 70 B-trim: 7 in 1/49 Lambda= 0.123497 statistics sampled from 10590 (10656) to 10590 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.692), E-opt: 0.2 (0.327), width: 16 Scan time: 2.570 The best scores are: opt bits E(32554) CCDS4542.1 NHLRC1 gene_id:378884|Hs108|chr6 ( 395) 2698 491.4 5.8e-139 >>CCDS4542.1 NHLRC1 gene_id:378884|Hs108|chr6 (395 aa) initn: 2698 init1: 2698 opt: 2698 Z-score: 2608.3 bits: 491.4 E(32554): 5.8e-139 Smith-Waterman score: 2698; 100.0% identity (100.0% similar) in 395 aa overlap (1-395:1-395) 10 20 30 40 50 60 pF1KE3 MAAEASESGPALHELMREAEISLLECKVCFEKFGHRQQRRPRNLSCGHVVCLACVAALAH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 MAAEASESGPALHELMREAEISLLECKVCFEKFGHRQQRRPRNLSCGHVVCLACVAALAH 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 PRTLALECPFCRRACRGCDTSDCLPVLHLIELLGSALRQSPAAHRAAPSAPGALTCHHTF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 PRTLALECPFCRRACRGCDTSDCLPVLHLIELLGSALRQSPAAHRAAPSAPGALTCHHTF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 GGWGTLVNPTGLALCPKTGRVVVVHDGRRRVKIFDSGGGCAHQFGEKGDAAQDIRYPVDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 GGWGTLVNPTGLALCPKTGRVVVVHDGRRRVKIFDSGGGCAHQFGEKGDAAQDIRYPVDV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 TITNDCHVVVTDAGDRSIKVFDFFGQIKLVIGGQFSLPWGVETTPQNGIVVTDAEAGSLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 TITNDCHVVVTDAGDRSIKVFDFFGQIKLVIGGQFSLPWGVETTPQNGIVVTDAEAGSLH 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 LLDVDFAEGVLRRTERLQAHLCNPRGVAVSWLTGAIAVLEHPLALGTGVCSTRVKVFSSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 LLDVDFAEGVLRRTERLQAHLCNPRGVAVSWLTGAIAVLEHPLALGTGVCSTRVKVFSSS 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 MQLVGQVDTFGLSLYFPSKITASAVTFDHQGNVIVADTSGPAILCLGKPEEFPVPKPMVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 MQLVGQVDTFGLSLYFPSKITASAVTFDHQGNVIVADTSGPAILCLGKPEEFPVPKPMVT 310 320 330 340 350 360 370 380 390 pF1KE3 HGLSHPVALTFTKENSLLVLDTASHSIKVYKVDWG ::::::::::::::::::::::::::::::::::: CCDS45 HGLSHPVALTFTKENSLLVLDTASHSIKVYKVDWG 370 380 390 395 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 07:42:33 2016 done: Sun Nov 6 07:42:33 2016 Total Scan time: 2.570 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]