Result of FASTA (ccds) for pFN21AE6173
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6173, 81 aa
  1>>>pF1KE6173 81 - 81 aa - 81 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.4745+/-0.000522; mu= 11.7814+/- 0.031
 mean_var=52.5787+/-11.118, 0's: 0 Z-trim(113.4): 11  B-trim: 0 in 0/49
 Lambda= 0.176876
 statistics sampled from 14031 (14036) to 14031 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.793), E-opt: 0.2 (0.431), width:  16
 Scan time:  1.060

The best scores are:                                      opt bits E(32554)
CCDS4383.1 ATP6V0E1 gene_id:8992|Hs108|chr5        (  81)  594 158.3 4.8e-40
CCDS55181.1 ATP6V0E2 gene_id:155066|Hs108|chr7     ( 130)  449 121.4 9.6e-29
CCDS47742.1 ATP6V0E2 gene_id:155066|Hs108|chr7     ( 213)  262 73.8 3.3e-14


>>CCDS4383.1 ATP6V0E1 gene_id:8992|Hs108|chr5             (81 aa)
 initn: 594 init1: 594 opt: 594  Z-score: 832.4  bits: 158.3 E(32554): 4.8e-40
Smith-Waterman score: 594; 100.0% identity (100.0% similar) in 81 aa overlap (1-81:1-81)

               10        20        30        40        50        60
pF1KE6 MAYHGLTVPLIVMSVFWGFVGFLVPWFIPKGPNRGVIITMLVTCSVCCYLFWLIAILAQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MAYHGLTVPLIVMSVFWGFVGFLVPWFIPKGPNRGVIITMLVTCSVCCYLFWLIAILAQL
               10        20        30        40        50        60

               70        80 
pF1KE6 NPLFGPQLKNETIWYLKYHWP
       :::::::::::::::::::::
CCDS43 NPLFGPQLKNETIWYLKYHWP
               70        80 

>>CCDS55181.1 ATP6V0E2 gene_id:155066|Hs108|chr7          (130 aa)
 initn: 440 init1: 410 opt: 449  Z-score: 629.5  bits: 121.4 E(32554): 9.6e-29
Smith-Waterman score: 449; 71.2% identity (93.8% similar) in 80 aa overlap (1-80:50-129)

                                             10        20        30
pF1KE6                               MAYHGLTVPLIVMSVFWGFVGFLVPWFIPK
                                     :. :....:.:....:::.::.  :::.::
CCDS55 MLSALPGWGPAHLQRPLLGPASCLGILRPAMTAHSFALPVIIFTTFWGLVGIAGPWFVPK
      20        30        40        50        60        70         

               40        50        60        70        80 
pF1KE6 GPNRGVIITMLVTCSVCCYLFWLIAILAQLNPLFGPQLKNETIWYLKYHWP
       ::::::::::::. .::::::::::::::::::::::::::::::... : 
CCDS55 GPNRGVIITMLVATAVCCYLFWLIAILAQLNPLFGPQLKNETIWYVRFLWE
      80        90       100       110       120       130

>>CCDS47742.1 ATP6V0E2 gene_id:155066|Hs108|chr7          (213 aa)
 initn: 224 init1: 214 opt: 262  Z-score: 368.6  bits: 73.8 E(32554): 3.3e-14
Smith-Waterman score: 262; 50.7% identity (77.5% similar) in 71 aa overlap (1-66:50-120)

                                             10        20        30
pF1KE6                               MAYHGLTVPLIVMSVFWGFVGFLVPWFIPK
                                     :. :....:.:....:::.::.  :::.::
CCDS47 MLSALPGWGPAHLQRPLLGPASCLGILRPAMTAHSFALPVIIFTTFWGLVGIAGPWFVPK
      20        30        40        50        60        70         

               40        50             60        70        80     
pF1KE6 GPNRGVIITMLVTCSVCCYLF-----WLIAILAQLNPLFGPQLKNETIWYLKYHWP    
       ::::::::::::. .:::::.       .: :.  .:  ::                   
CCDS47 GPNRGVIITMLVATAVCCYLLCPALGMTVAPLSLTTPSSGPSPTQLCLVTSSLLLAPRDP
      80        90       100       110       120       130         

CCDS47 DPQGLPGSWKSSQSSQPARALGSPGHSSGRGDVLLQYPHCSGVCPLSQGDAAGELVWVGS
     140       150       160       170       180       190         




81 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:04:17 2016 done: Tue Nov  8 10:04:17 2016
 Total Scan time:  1.060 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com