Result of FASTA (ccds) for pFN21AB6744
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6744, 144 aa
  1>>>pF1KB6744 144 - 144 aa - 144 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7963+/-0.000714; mu= 14.5467+/- 0.043
 mean_var=64.7270+/-12.591, 0's: 0 Z-trim(109.6): 13  B-trim: 112 in 1/50
 Lambda= 0.159416
 statistics sampled from 10994 (10997) to 10994 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.72), E-opt: 0.2 (0.338), width:  16
 Scan time:  1.200

The best scores are:                                      opt bits E(32554)
CCDS4189.1 IL9 gene_id:3578|Hs108|chr5             ( 144)  976 232.4 7.5e-62


>>CCDS4189.1 IL9 gene_id:3578|Hs108|chr5                  (144 aa)
 initn: 976 init1: 976 opt: 976  Z-score: 1223.9  bits: 232.4 E(32554): 7.5e-62
Smith-Waterman score: 976; 100.0% identity (100.0% similar) in 144 aa overlap (1-144:1-144)

               10        20        30        40        50        60
pF1KB6 MLLAMVLTSALLLCSVAGQGCPTLAGILDINFLINKMQEDPASKCHCSANVTSCLCLGIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MLLAMVLTSALLLCSVAGQGCPTLAGILDINFLINKMQEDPASKCHCSANVTSCLCLGIP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SDNCTRPCFSERLSQMTNTTMQTRYPLIFSRVKKSVEVLKNNKCPYFSCEQPCNQTTAGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 SDNCTRPCFSERLSQMTNTTMQTRYPLIFSRVKKSVEVLKNNKCPYFSCEQPCNQTTAGN
               70        80        90       100       110       120

              130       140    
pF1KB6 ALTFLKSLLEIFQKEKMRGMRGKI
       ::::::::::::::::::::::::
CCDS41 ALTFLKSLLEIFQKEKMRGMRGKI
              130       140    




144 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:21:52 2016 done: Mon Nov  7 22:21:52 2016
 Total Scan time:  1.200 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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