FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE9537, 324 aa 1>>>pF1KE9537 324 - 324 aa - 324 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.7356+/-0.000694; mu= 5.5606+/- 0.042 mean_var=133.1516+/-26.739, 0's: 0 Z-trim(114.6): 4 B-trim: 7 in 1/52 Lambda= 0.111148 statistics sampled from 15192 (15194) to 15192 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.788), E-opt: 0.2 (0.467), width: 16 Scan time: 3.200 The best scores are: opt bits E(32554) CCDS4017.1 TMEM171 gene_id:134285|Hs108|chr5 ( 324) 2208 364.6 6e-101 CCDS54869.1 TMEM171 gene_id:134285|Hs108|chr5 ( 323) 2189 361.6 4.9e-100 >>CCDS4017.1 TMEM171 gene_id:134285|Hs108|chr5 (324 aa) initn: 2208 init1: 2208 opt: 2208 Z-score: 1925.9 bits: 364.6 E(32554): 6e-101 Smith-Waterman score: 2208; 99.7% identity (100.0% similar) in 324 aa overlap (1-324:1-324) 10 20 30 40 50 60 pF1KE9 MSPAAAAEPDGDQQDRHVSKLILCFFVFGAVLLCVGVLLSIFGFQACQYKPLPDCPMVLK ::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::: CCDS40 MSPAAAAEPDGDQQDRHVSKLIFCFFVFGAVLLCVGVLLSIFGFQACQYKPLPDCPMVLK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 VAGPACAVVGLGAVILARSRAQLQLRAGLQRGQQMDPDRAFICGESRQFAQCLIFGFLFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS40 VAGPACAVVGLGAVILARSRAQLQLRAGLQRGQQMDPDRAFICGESRQFAQCLIFGFLFL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 TSGMLISVLGIWVPGCGSNWAQEPLNETDTGDSEPRMCGFLSLQIMGPLIVLVGLCFFVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS40 TSGMLISVLGIWVPGCGSNWAQEPLNETDTGDSEPRMCGFLSLQIMGPLIVLVGLCFFVV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 AHVKKRNTLNAGQDASEREEGQIQIMEPVQVTVGDSVIIFPPPPPPYFPESSASAVAESP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS40 AHVKKRNTLNAGQDASEREEGQIQIMEPVQVTVGDSVIIFPPPPPPYFPESSASAVAESP 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE9 GTNSLLPNENPPSYYSIFNYGRTPTSEGAASERDCESIYTISGTNSSSEASHTPHLPSEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS40 GTNSLLPNENPPSYYSIFNYGRTPTSEGAASERDCESIYTISGTNSSSEASHTPHLPSEL 250 260 270 280 290 300 310 320 pF1KE9 PPRYEEKENAAATFLPLSSEPSPP :::::::::::::::::::::::: CCDS40 PPRYEEKENAAATFLPLSSEPSPP 310 320 >>CCDS54869.1 TMEM171 gene_id:134285|Hs108|chr5 (323 aa) initn: 1793 init1: 1793 opt: 2189 Z-score: 1909.4 bits: 361.6 E(32554): 4.9e-100 Smith-Waterman score: 2189; 99.4% identity (99.7% similar) in 324 aa overlap (1-324:1-323) 10 20 30 40 50 60 pF1KE9 MSPAAAAEPDGDQQDRHVSKLILCFFVFGAVLLCVGVLLSIFGFQACQYKPLPDCPMVLK ::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::: CCDS54 MSPAAAAEPDGDQQDRHVSKLIFCFFVFGAVLLCVGVLLSIFGFQACQYKPLPDCPMVLK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 VAGPACAVVGLGAVILARSRAQLQLRAGLQRGQQMDPDRAFICGESRQFAQCLIFGFLFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 VAGPACAVVGLGAVILARSRAQLQLRAGLQRGQQMDPDRAFICGESRQFAQCLIFGFLFL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 TSGMLISVLGIWVPGCGSNWAQEPLNETDTGDSEPRMCGFLSLQIMGPLIVLVGLCFFVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 TSGMLISVLGIWVPGCGSNWAQEPLNETDTGDSEPRMCGFLSLQIMGPLIVLVGLCFFVV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 AHVKKRNTLNAGQDASEREEGQIQIMEPVQVTVGDSVIIFPPPPPPYFPESSASAVAESP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 AHVKKRNTLNAGQDASEREEGQIQIMEPVQVTVGDSVIIFPPPPPPYFPESSASAVAESP 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE9 GTNSLLPNENPPSYYSIFNYGRTPTSEGAASERDCESIYTISGTNSSSEASHTPHLPSEL ::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::: CCDS54 GTNSLLPNENPPSYYSIFNYG-TPTSEGAASERDCESIYTISGTNSSSEASHTPHLPSEL 250 260 270 280 290 310 320 pF1KE9 PPRYEEKENAAATFLPLSSEPSPP :::::::::::::::::::::::: CCDS54 PPRYEEKENAAATFLPLSSEPSPP 300 310 320 324 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 17:13:43 2016 done: Sun Nov 6 17:13:43 2016 Total Scan time: 3.200 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]