FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6508, 175 aa 1>>>pF1KE6508 175 - 175 aa - 175 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3565+/-0.000363; mu= 11.5865+/- 0.022 mean_var=56.0587+/-10.969, 0's: 0 Z-trim(111.8): 17 B-trim: 15 in 1/51 Lambda= 0.171298 statistics sampled from 20517 (20528) to 20517 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.622), E-opt: 0.2 (0.241), width: 16 Scan time: 4.990 The best scores are: opt bits E(85289) NP_002486 (OMIM: 252010,256000,602694) NADH dehydr ( 175) 1140 289.8 1.5e-78 NP_001304980 (OMIM: 252010,256000,602694) NADH deh ( 120) 758 195.4 2.8e-50 XP_016864980 (OMIM: 252010,256000,602694) PREDICTE ( 118) 358 96.5 1.6e-20 >>NP_002486 (OMIM: 252010,256000,602694) NADH dehydrogen (175 aa) initn: 1140 init1: 1140 opt: 1140 Z-score: 1531.3 bits: 289.8 E(85289): 1.5e-78 Smith-Waterman score: 1140; 99.4% identity (100.0% similar) in 175 aa overlap (1-175:1-175) 10 20 30 40 50 60 pF1KE6 MAAVSMSVVLRQTLWRRRAVAVAALSVSRVPTRSLRTSSWRLAQDQTQDTQLITVDEKLD ::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::: NP_002 MAAVSMSVVLRQTLWRRRAVAVAALSVSRVPTRSLRTSTWRLAQDQTQDTQLITVDEKLD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 ITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 ITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADP 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 LSNMVLTFSTKEDAVSFAEKNGWSYDIEERKVPKPKSKSYGANFSWNKRTRVSTK ::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 LSNMVLTFSTKEDAVSFAEKNGWSYDIEERKVPKPKSKSYGANFSWNKRTRVSTK 130 140 150 160 170 >>NP_001304980 (OMIM: 252010,256000,602694) NADH dehydro (120 aa) initn: 778 init1: 758 opt: 758 Z-score: 1023.8 bits: 195.4 E(85289): 2.8e-50 Smith-Waterman score: 758; 97.5% identity (99.2% similar) in 119 aa overlap (1-119:1-119) 10 20 30 40 50 60 pF1KE6 MAAVSMSVVLRQTLWRRRAVAVAALSVSRVPTRSLRTSSWRLAQDQTQDTQLITVDEKLD ::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::: NP_001 MAAVSMSVVLRQTLWRRRAVAVAALSVSRVPTRSLRTSTWRLAQDQTQDTQLITVDEKLD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 ITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADP ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: . NP_001 ITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTMEL 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 LSNMVLTFSTKEDAVSFAEKNGWSYDIEERKVPKPKSKSYGANFSWNKRTRVSTK >>XP_016864980 (OMIM: 252010,256000,602694) PREDICTED: N (118 aa) initn: 371 init1: 358 opt: 358 Z-score: 489.6 bits: 96.5 E(85289): 1.6e-20 Smith-Waterman score: 358; 98.3% identity (100.0% similar) in 59 aa overlap (1-59:1-59) 10 20 30 40 50 60 pF1KE6 MAAVSMSVVLRQTLWRRRAVAVAALSVSRVPTRSLRTSSWRLAQDQTQDTQLITVDEKLD ::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::: XP_016 MAAVSMSVVLRQTLWRRRAVAVAALSVSRVPTRSLRTSTWRLAQDQTQDTQLITVDEKLV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 ITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADP XP_016 YLVPLCFTFCGLATPSLELATLFPASRHLEFLFTLPGCILTNPEDFIRSPSTYSSNAT 70 80 90 100 110 175 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 13:56:35 2016 done: Tue Nov 8 13:56:36 2016 Total Scan time: 4.990 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]