FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1605, 109 aa 1>>>pF1KE1605 109 - 109 aa - 109 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.5776+/-0.000288; mu= 13.2050+/- 0.018 mean_var=50.6368+/- 9.796, 0's: 0 Z-trim(117.0): 60 B-trim: 10 in 1/53 Lambda= 0.180236 statistics sampled from 28510 (28571) to 28510 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.741), E-opt: 0.2 (0.335), width: 16 Scan time: 4.360 The best scores are: opt bits E(85289) NP_006410 (OMIM: 605149) C-X-C motif chemokine 13 ( 109) 727 196.0 1e-50 XP_006714126 (OMIM: 605149) PREDICTED: C-X-C motif ( 109) 727 196.0 1e-50 NP_000575 (OMIM: 146930) interleukin-8 precursor [ ( 99) 181 54.0 5.2e-08 NP_001556 (OMIM: 147310) C-X-C motif chemokine 10 ( 98) 167 50.3 6.5e-07 NP_002984 (OMIM: 138965) C-X-C motif chemokine 6 p ( 114) 166 50.1 8.8e-07 NP_002977 (OMIM: 600807,601156,609423) eotaxin pre ( 97) 158 48.0 3.2e-06 NP_002985 (OMIM: 600324) C-X-C motif chemokine 5 p ( 114) 154 47.0 7.6e-06 NP_002081 (OMIM: 139111) C-X-C motif chemokine 3 p ( 107) 149 45.7 1.8e-05 NP_006264 (OMIM: 158106) C-C motif chemokine 7 pre ( 99) 142 43.8 5.9e-05 NP_002080 (OMIM: 139110) C-X-C motif chemokine 2 p ( 107) 141 43.6 7.5e-05 NP_002695 (OMIM: 121010) platelet basic protein pr ( 128) 140 43.4 0.0001 NP_001502 (OMIM: 155730) growth-regulated alpha pr ( 107) 139 43.1 0.00011 NP_002979 (OMIM: 603757) C-C motif chemokine 18 pr ( 89) 130 40.7 0.00047 NP_002610 (OMIM: 173460) platelet factor 4 precurs ( 101) 130 40.7 0.00052 NP_000600 (OMIM: 600835,609423) stromal cell-deriv ( 93) 126 39.7 0.001 XP_005265753 (OMIM: 173460) PREDICTED: platelet fa ( 110) 126 39.7 0.0011 NP_005399 (OMIM: 601391) C-C motif chemokine 13 pr ( 98) 125 39.4 0.0013 NP_005614 (OMIM: 602283) C-C motif chemokine 8 pre ( 99) 125 39.4 0.0013 NP_002611 (OMIM: 173461) platelet factor 4 variant ( 104) 122 38.6 0.0023 NP_954637 (OMIM: 600835,609423) stromal cell-deriv ( 89) 121 38.3 0.0024 NP_002973 (OMIM: 158105,182940,607948,609423) C-C ( 99) 121 38.4 0.0026 NP_001029058 (OMIM: 600835,609423) stromal cell-de ( 119) 121 38.4 0.003 NP_002980 (OMIM: 602737) C-C motif chemokine 21 pr ( 134) 121 38.4 0.0033 NP_001171605 (OMIM: 600835,609423) stromal cell-de ( 140) 121 38.5 0.0035 NP_002975 (OMIM: 182284) C-C motif chemokine 4 pre ( 92) 119 37.8 0.0035 XP_011516306 (OMIM: 602737) PREDICTED: C-C motif c ( 145) 121 38.5 0.0036 NP_003166 (OMIM: 604828) cytokine SCM-1 beta precu ( 114) 117 37.4 0.006 >>NP_006410 (OMIM: 605149) C-X-C motif chemokine 13 prec (109 aa) initn: 727 init1: 727 opt: 727 Z-score: 1031.4 bits: 196.0 E(85289): 1e-50 Smith-Waterman score: 727; 100.0% identity (100.0% similar) in 109 aa overlap (1-109:1-109) 10 20 30 40 50 60 pF1KE1 MKFISTSLLLMLLVSSLSPVQGVLEVYYTSLRCRCVQESSVFIPRRFIDRIQILPRGNGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 MKFISTSLLLMLLVSSLSPVQGVLEVYYTSLRCRCVQESSVFIPRRFIDRIQILPRGNGC 10 20 30 40 50 60 70 80 90 100 pF1KE1 PRKEIIVWKKNKSIVCVDPQAEWIQRMMEVLRKRSSSTLPVPVFKRKIP ::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 PRKEIIVWKKNKSIVCVDPQAEWIQRMMEVLRKRSSSTLPVPVFKRKIP 70 80 90 100 >>XP_006714126 (OMIM: 605149) PREDICTED: C-X-C motif che (109 aa) initn: 727 init1: 727 opt: 727 Z-score: 1031.4 bits: 196.0 E(85289): 1e-50 Smith-Waterman score: 727; 100.0% identity (100.0% similar) in 109 aa overlap (1-109:1-109) 10 20 30 40 50 60 pF1KE1 MKFISTSLLLMLLVSSLSPVQGVLEVYYTSLRCRCVQESSVFIPRRFIDRIQILPRGNGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 MKFISTSLLLMLLVSSLSPVQGVLEVYYTSLRCRCVQESSVFIPRRFIDRIQILPRGNGC 10 20 30 40 50 60 70 80 90 100 pF1KE1 PRKEIIVWKKNKSIVCVDPQAEWIQRMMEVLRKRSSSTLPVPVFKRKIP ::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 PRKEIIVWKKNKSIVCVDPQAEWIQRMMEVLRKRSSSTLPVPVFKRKIP 70 80 90 100 >>NP_000575 (OMIM: 146930) interleukin-8 precursor [Homo (99 aa) initn: 188 init1: 176 opt: 181 Z-score: 264.8 bits: 54.0 E(85289): 5.2e-08 Smith-Waterman score: 181; 31.2% identity (63.5% similar) in 96 aa overlap (4-98:5-99) 10 20 30 40 50 pF1KE1 MKFISTSLLLMLLVSSLSPVQGVLEVYYTSLRCRCVQE-SSVFIPRRFIDRIQILPRGN ....:: .:.:. .:: :::.:.. :. : :. :: ..... : NP_000 MTSKLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPK-FIKELRVIESGP 10 20 30 40 50 60 70 80 90 100 pF1KE1 GCPRKEIIVWKKNKSIVCVDPQAEWIQRMMEVLRKRSSSTLPVPVFKRKIP : :::: .. .:.::. .:.::..: . ::. .. NP_000 HCANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS 60 70 80 90 >>NP_001556 (OMIM: 147310) C-X-C motif chemokine 10 prec (98 aa) initn: 128 init1: 102 opt: 167 Z-score: 245.2 bits: 50.3 E(85289): 6.5e-07 Smith-Waterman score: 167; 29.8% identity (64.9% similar) in 94 aa overlap (8-100:7-98) 10 20 30 40 50 60 pF1KE1 MKFISTSLLLMLLVSSLSPVQGVLEVYYTSLRCRCVQESSVFIPRRFIDRIQILPRGNGC :. :. .:: .::: ..:: :.. :. . : .....:.: .. : NP_001 MNQTAILICCLIFLTLSGIQGV--PLSRTVRCTCISISNQPVNPRSLEKLEIIPASQFC 10 20 30 40 50 70 80 90 100 pF1KE1 PRKEIIV-WKKNKSIVCVDPQAEWIQRMMEVLRKRSSSTLPVPVFKRKIP :: :::. ::. :..:... :. ..... :. :. : NP_001 PRVEIIATMKKKGEKRCLNPESKAIKNLLKAVSKERSKRSP 60 70 80 90 >>NP_002984 (OMIM: 138965) C-X-C motif chemokine 6 precu (114 aa) initn: 128 init1: 64 opt: 166 Z-score: 242.8 bits: 50.1 E(85289): 8.8e-07 Smith-Waterman score: 166; 29.8% identity (64.3% similar) in 84 aa overlap (8-89:22-104) 10 20 30 40 pF1KE1 MKFISTSLLLMLLVSSLSPVQ--GVLEVYYTSLRCRCVQESSVFIP : :.::.. .:. : . . : ::: :.. . : NP_002 MSLPSSRAARVPGPSGSLCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNP 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE1 RRFIDRIQILPRGNGCPRKEIIVWKKNKSIVCVDPQAEWIQRMMEVLRKRSSSTLPVPVF . : ..:..: : : . :... :: . ::.::.: ....... NP_002 KT-IGKLQVFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLKKVIQKILDSGNKKN 70 80 90 100 110 pF1KE1 KRKIP >>NP_002977 (OMIM: 600807,601156,609423) eotaxin precurs (97 aa) initn: 165 init1: 116 opt: 158 Z-score: 232.6 bits: 48.0 E(85289): 3.2e-06 Smith-Waterman score: 158; 28.0% identity (59.0% similar) in 100 aa overlap (1-100:1-97) 10 20 30 40 50 60 pF1KE1 MKFISTSLLLMLLVSSLSPVQGVLEVYYTSLRCRCVQESSVFIPRRFIDRIQILPRGNGC :: .. : :.:.....:: ::. . : : . .. :: . .. . . :. : NP_002 MKVSAALLWLLLIAAAFSP-QGLAGPASVPTTC-CFNLANRKIPLQRLESYRRITSGK-C 10 20 30 40 50 70 80 90 100 pF1KE1 PRKEIIVWKKNKSIVCVDPQAEWIQRMMEVLRKRSSSTLPVPVFKRKIP :.: .: : . .:.::. .:.: :. : ..: . : NP_002 PQKAVIFKTKLAKDICADPKKKWVQDSMKYLDQKSPTPKP 60 70 80 90 >>NP_002985 (OMIM: 600324) C-X-C motif chemokine 5 precu (114 aa) initn: 127 init1: 62 opt: 154 Z-score: 225.9 bits: 47.0 E(85289): 7.6e-06 Smith-Waterman score: 154; 27.4% identity (65.5% similar) in 84 aa overlap (8-89:22-104) 10 20 30 40 pF1KE1 MKFISTSLLLMLLVSSLSPVQ--GVLEVYYTSLRCRCVQESSVFIP :.:.::... .:. : . ::: :.: .. : NP_002 MSLLSSRAARVPGPSSSLCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQGVHP 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE1 RRFIDRIQILPRGNGCPRKEIIVWKKNKSIVCVDPQAEWIQRMMEVLRKRSSSTLPVPVF . .:. .:.. : : . :... :: . .:.::.: ....... NP_002 K-MISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN 70 80 90 100 110 pF1KE1 KRKIP >>NP_002081 (OMIM: 139111) C-X-C motif chemokine 3 precu (107 aa) initn: 84 init1: 51 opt: 149 Z-score: 219.3 bits: 45.7 E(85289): 1.8e-05 Smith-Waterman score: 149; 29.9% identity (63.9% similar) in 97 aa overlap (2-97:14-107) 10 20 30 40 pF1KE1 MKFISTSLLLMLLVSSLSPVQGVLEVYYTSLRCRCVQESSVFIPRRFI ... ..:::.:::.. . :. : : :::.:.: . : . : NP_002 MAHATLSAAPSNPRLLRVALLLLLLVAASRRAAGASVV--TELRCQCLQTLQG-IHLKNI 10 20 30 40 50 50 60 70 80 90 100 pF1KE1 DRIQILPRGNGCPRKEIIVWKKNKSIVCVDPQAEWIQRMME-VLRKRSSSTLPVPVFKRK . ... : : . :.:. :: . .:..: . .:...: .: : :.. NP_002 QSVNVRSPGPHCAQTEVIATLKNGKKACLNPASPMVQKIIEKILNKGSTN 60 70 80 90 100 pF1KE1 IP >>NP_006264 (OMIM: 158106) C-C motif chemokine 7 precurs (99 aa) initn: 155 init1: 109 opt: 142 Z-score: 210.0 bits: 43.8 E(85289): 5.9e-05 Smith-Waterman score: 142; 28.3% identity (59.6% similar) in 99 aa overlap (1-97:1-96) 10 20 30 40 50 pF1KE1 MKFISTSLLLMLLVSSLSPVQGVLEVY--YTSLRCRCVQESSVFIPRRFIDRIQILPRGN :: .. : :.: ....:: ::. . :: : : . . ::.. .. . .. NP_006 MKASAALLCLLLTAAAFSP-QGLAQPVGINTSTTC-CYRFINKKIPKQRLESYR-RTTSS 10 20 30 40 50 60 70 80 90 100 pF1KE1 GCPRKEIIVWKKNKSIVCVDPQAEWIQRMMEVLRKRSSSTLPVPVFKRKIP :::. .: : . .:.:: .:.: .:. : :.... NP_006 HCPREAVIFKTKLDKEICADPTQKWVQDFMKHLDKKTQTPKL 60 70 80 90 >>NP_002080 (OMIM: 139110) C-X-C motif chemokine 2 precu (107 aa) initn: 100 init1: 51 opt: 141 Z-score: 208.1 bits: 43.6 E(85289): 7.5e-05 Smith-Waterman score: 141; 27.1% identity (62.5% similar) in 96 aa overlap (2-97:14-106) 10 20 30 40 pF1KE1 MKFISTSLLLMLLVSSLSPVQGVLEVYYTSLRCRCVQESSVFIPRRFI ... ..:::.:::.. . :. : :::.:.: . : . : NP_002 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGA--PLATELRCQCLQTLQG-IHLKNI 10 20 30 40 50 50 60 70 80 90 100 pF1KE1 DRIQILPRGNGCPRKEIIVWKKNKSIVCVDPQAEWIQRMMEVLRKRSSSTLPVPVFKRKI . ... : : . :.:. :: . .:..: . .....: . : ..: NP_002 QSVKVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN 60 70 80 90 100 pF1KE1 P 109 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 17:28:08 2016 done: Sun Nov 6 17:28:08 2016 Total Scan time: 4.360 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]