Result of FASTA (omim) for pFN21AE1605
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1605, 109 aa
  1>>>pF1KE1605 109 - 109 aa - 109 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.5776+/-0.000288; mu= 13.2050+/- 0.018
 mean_var=50.6368+/- 9.796, 0's: 0 Z-trim(117.0): 60  B-trim: 10 in 1/53
 Lambda= 0.180236
 statistics sampled from 28510 (28571) to 28510 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.741), E-opt: 0.2 (0.335), width:  16
 Scan time:  4.360

The best scores are:                                      opt bits E(85289)
NP_006410 (OMIM: 605149) C-X-C motif chemokine 13  ( 109)  727 196.0   1e-50
XP_006714126 (OMIM: 605149) PREDICTED: C-X-C motif ( 109)  727 196.0   1e-50
NP_000575 (OMIM: 146930) interleukin-8 precursor [ (  99)  181 54.0 5.2e-08
NP_001556 (OMIM: 147310) C-X-C motif chemokine 10  (  98)  167 50.3 6.5e-07
NP_002984 (OMIM: 138965) C-X-C motif chemokine 6 p ( 114)  166 50.1 8.8e-07
NP_002977 (OMIM: 600807,601156,609423) eotaxin pre (  97)  158 48.0 3.2e-06
NP_002985 (OMIM: 600324) C-X-C motif chemokine 5 p ( 114)  154 47.0 7.6e-06
NP_002081 (OMIM: 139111) C-X-C motif chemokine 3 p ( 107)  149 45.7 1.8e-05
NP_006264 (OMIM: 158106) C-C motif chemokine 7 pre (  99)  142 43.8 5.9e-05
NP_002080 (OMIM: 139110) C-X-C motif chemokine 2 p ( 107)  141 43.6 7.5e-05
NP_002695 (OMIM: 121010) platelet basic protein pr ( 128)  140 43.4  0.0001
NP_001502 (OMIM: 155730) growth-regulated alpha pr ( 107)  139 43.1 0.00011
NP_002979 (OMIM: 603757) C-C motif chemokine 18 pr (  89)  130 40.7 0.00047
NP_002610 (OMIM: 173460) platelet factor 4 precurs ( 101)  130 40.7 0.00052
NP_000600 (OMIM: 600835,609423) stromal cell-deriv (  93)  126 39.7   0.001
XP_005265753 (OMIM: 173460) PREDICTED: platelet fa ( 110)  126 39.7  0.0011
NP_005399 (OMIM: 601391) C-C motif chemokine 13 pr (  98)  125 39.4  0.0013
NP_005614 (OMIM: 602283) C-C motif chemokine 8 pre (  99)  125 39.4  0.0013
NP_002611 (OMIM: 173461) platelet factor 4 variant ( 104)  122 38.6  0.0023
NP_954637 (OMIM: 600835,609423) stromal cell-deriv (  89)  121 38.3  0.0024
NP_002973 (OMIM: 158105,182940,607948,609423) C-C  (  99)  121 38.4  0.0026
NP_001029058 (OMIM: 600835,609423) stromal cell-de ( 119)  121 38.4   0.003
NP_002980 (OMIM: 602737) C-C motif chemokine 21 pr ( 134)  121 38.4  0.0033
NP_001171605 (OMIM: 600835,609423) stromal cell-de ( 140)  121 38.5  0.0035
NP_002975 (OMIM: 182284) C-C motif chemokine 4 pre (  92)  119 37.8  0.0035
XP_011516306 (OMIM: 602737) PREDICTED: C-C motif c ( 145)  121 38.5  0.0036
NP_003166 (OMIM: 604828) cytokine SCM-1 beta precu ( 114)  117 37.4   0.006


>>NP_006410 (OMIM: 605149) C-X-C motif chemokine 13 prec  (109 aa)
 initn: 727 init1: 727 opt: 727  Z-score: 1031.4  bits: 196.0 E(85289): 1e-50
Smith-Waterman score: 727; 100.0% identity (100.0% similar) in 109 aa overlap (1-109:1-109)

               10        20        30        40        50        60
pF1KE1 MKFISTSLLLMLLVSSLSPVQGVLEVYYTSLRCRCVQESSVFIPRRFIDRIQILPRGNGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MKFISTSLLLMLLVSSLSPVQGVLEVYYTSLRCRCVQESSVFIPRRFIDRIQILPRGNGC
               10        20        30        40        50        60

               70        80        90       100         
pF1KE1 PRKEIIVWKKNKSIVCVDPQAEWIQRMMEVLRKRSSSTLPVPVFKRKIP
       :::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 PRKEIIVWKKNKSIVCVDPQAEWIQRMMEVLRKRSSSTLPVPVFKRKIP
               70        80        90       100         

>>XP_006714126 (OMIM: 605149) PREDICTED: C-X-C motif che  (109 aa)
 initn: 727 init1: 727 opt: 727  Z-score: 1031.4  bits: 196.0 E(85289): 1e-50
Smith-Waterman score: 727; 100.0% identity (100.0% similar) in 109 aa overlap (1-109:1-109)

               10        20        30        40        50        60
pF1KE1 MKFISTSLLLMLLVSSLSPVQGVLEVYYTSLRCRCVQESSVFIPRRFIDRIQILPRGNGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MKFISTSLLLMLLVSSLSPVQGVLEVYYTSLRCRCVQESSVFIPRRFIDRIQILPRGNGC
               10        20        30        40        50        60

               70        80        90       100         
pF1KE1 PRKEIIVWKKNKSIVCVDPQAEWIQRMMEVLRKRSSSTLPVPVFKRKIP
       :::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PRKEIIVWKKNKSIVCVDPQAEWIQRMMEVLRKRSSSTLPVPVFKRKIP
               70        80        90       100         

>>NP_000575 (OMIM: 146930) interleukin-8 precursor [Homo  (99 aa)
 initn: 188 init1: 176 opt: 181  Z-score: 264.8  bits: 54.0 E(85289): 5.2e-08
Smith-Waterman score: 181; 31.2% identity (63.5% similar) in 96 aa overlap (4-98:5-99)

                10        20        30         40        50        
pF1KE1  MKFISTSLLLMLLVSSLSPVQGVLEVYYTSLRCRCVQE-SSVFIPRRFIDRIQILPRGN
           ....::  .:.:.     .::      :::.:..  :. : :. :: .....  : 
NP_000 MTSKLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPK-FIKELRVIESGP
               10        20        30        40         50         

       60        70        80        90       100         
pF1KE1 GCPRKEIIVWKKNKSIVCVDPQAEWIQRMMEVLRKRSSSTLPVPVFKRKIP
        :   ::::  ..   .:.::. .:.::..: . ::. ..           
NP_000 HCANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS           
      60        70        80        90                    

>>NP_001556 (OMIM: 147310) C-X-C motif chemokine 10 prec  (98 aa)
 initn: 128 init1: 102 opt: 167  Z-score: 245.2  bits: 50.3 E(85289): 6.5e-07
Smith-Waterman score: 167; 29.8% identity (64.9% similar) in 94 aa overlap (8-100:7-98)

               10        20        30        40        50        60
pF1KE1 MKFISTSLLLMLLVSSLSPVQGVLEVYYTSLRCRCVQESSVFIPRRFIDRIQILPRGNGC
              :.  :.  .:: .:::      ..:: :.. :.  .  : .....:.: .. :
NP_001  MNQTAILICCLIFLTLSGIQGV--PLSRTVRCTCISISNQPVNPRSLEKLEIIPASQFC
                10        20          30        40        50       

                70        80        90       100         
pF1KE1 PRKEIIV-WKKNKSIVCVDPQAEWIQRMMEVLRKRSSSTLPVPVFKRKIP
       :: :::.  ::.    :..:... :. ..... :. :.  :         
NP_001 PRVEIIATMKKKGEKRCLNPESKAIKNLLKAVSKERSKRSP         
        60        70        80        90                 

>>NP_002984 (OMIM: 138965) C-X-C motif chemokine 6 precu  (114 aa)
 initn: 128 init1:  64 opt: 166  Z-score: 242.8  bits: 50.1 E(85289): 8.8e-07
Smith-Waterman score: 166; 29.8% identity (64.3% similar) in 84 aa overlap (8-89:22-104)

                             10        20          30        40    
pF1KE1               MKFISTSLLLMLLVSSLSPVQ--GVLEVYYTSLRCRCVQESSVFIP
                            : :.::..  .:.   : . .  : ::: :.. .    :
NP_002 MSLPSSRAARVPGPSGSLCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNP
               10        20        30        40        50        60

           50        60        70        80        90       100    
pF1KE1 RRFIDRIQILPRGNGCPRKEIIVWKKNKSIVCVDPQAEWIQRMMEVLRKRSSSTLPVPVF
       .  : ..:..: :  : . :...  :: . ::.::.: .......               
NP_002 KT-IGKLQVFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLKKVIQKILDSGNKKN     
                70        80        90       100       110         

            
pF1KE1 KRKIP

>>NP_002977 (OMIM: 600807,601156,609423) eotaxin precurs  (97 aa)
 initn: 165 init1: 116 opt: 158  Z-score: 232.6  bits: 48.0 E(85289): 3.2e-06
Smith-Waterman score: 158; 28.0% identity (59.0% similar) in 100 aa overlap (1-100:1-97)

               10        20        30        40        50        60
pF1KE1 MKFISTSLLLMLLVSSLSPVQGVLEVYYTSLRCRCVQESSVFIPRRFIDRIQILPRGNGC
       ::  .. : :.:.....:: ::.     .   : : . ..  :: . ..  . .  :. :
NP_002 MKVSAALLWLLLIAAAFSP-QGLAGPASVPTTC-CFNLANRKIPLQRLESYRRITSGK-C
               10         20        30         40        50        

               70        80        90       100         
pF1KE1 PRKEIIVWKKNKSIVCVDPQAEWIQRMMEVLRKRSSSTLPVPVFKRKIP
       :.: .:   :  . .:.::. .:.:  :. : ..: .  :         
NP_002 PQKAVIFKTKLAKDICADPKKKWVQDSMKYLDQKSPTPKP         
        60        70        80        90                

>>NP_002985 (OMIM: 600324) C-X-C motif chemokine 5 precu  (114 aa)
 initn: 127 init1:  62 opt: 154  Z-score: 225.9  bits: 47.0 E(85289): 7.6e-06
Smith-Waterman score: 154; 27.4% identity (65.5% similar) in 84 aa overlap (8-89:22-104)

                             10        20          30        40    
pF1KE1               MKFISTSLLLMLLVSSLSPVQ--GVLEVYYTSLRCRCVQESSVFIP
                            :.:.::... .:.   :   .    ::: :.: ..   :
NP_002 MSLLSSRAARVPGPSSSLCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQGVHP
               10        20        30        40        50        60

           50        60        70        80        90       100    
pF1KE1 RRFIDRIQILPRGNGCPRKEIIVWKKNKSIVCVDPQAEWIQRMMEVLRKRSSSTLPVPVF
       . .:. .:..  :  : . :...  :: . .:.::.: .......               
NP_002 K-MISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN     
                70        80        90       100       110         

            
pF1KE1 KRKIP

>>NP_002081 (OMIM: 139111) C-X-C motif chemokine 3 precu  (107 aa)
 initn:  84 init1:  51 opt: 149  Z-score: 219.3  bits: 45.7 E(85289): 1.8e-05
Smith-Waterman score: 149; 29.9% identity (63.9% similar) in 97 aa overlap (2-97:14-107)

                           10        20        30        40        
pF1KE1             MKFISTSLLLMLLVSSLSPVQGVLEVYYTSLRCRCVQESSVFIPRRFI
                    ... ..:::.:::..   . :.  :  : :::.:.:  .  :  . :
NP_002 MAHATLSAAPSNPRLLRVALLLLLLVAASRRAAGASVV--TELRCQCLQTLQG-IHLKNI
               10        20        30          40        50        

       50        60        70        80         90       100       
pF1KE1 DRIQILPRGNGCPRKEIIVWKKNKSIVCVDPQAEWIQRMME-VLRKRSSSTLPVPVFKRK
       . ...   :  : . :.:.  :: . .:..: .  .:...: .: : :..          
NP_002 QSVNVRSPGPHCAQTEVIATLKNGKKACLNPASPMVQKIIEKILNKGSTN          
        60        70        80        90       100                 

         
pF1KE1 IP

>>NP_006264 (OMIM: 158106) C-C motif chemokine 7 precurs  (99 aa)
 initn: 155 init1: 109 opt: 142  Z-score: 210.0  bits: 43.8 E(85289): 5.9e-05
Smith-Waterman score: 142; 28.3% identity (59.6% similar) in 99 aa overlap (1-97:1-96)

               10        20          30        40        50        
pF1KE1 MKFISTSLLLMLLVSSLSPVQGVLEVY--YTSLRCRCVQESSVFIPRRFIDRIQILPRGN
       ::  .. : :.: ....:: ::. .     ::  : : .  .  ::.. ..  .    ..
NP_006 MKASAALLCLLLTAAAFSP-QGLAQPVGINTSTTC-CYRFINKKIPKQRLESYR-RTTSS
               10         20        30         40        50        

       60        70        80        90       100         
pF1KE1 GCPRKEIIVWKKNKSIVCVDPQAEWIQRMMEVLRKRSSSTLPVPVFKRKIP
        :::. .:   :  . .:.::  .:.: .:. : :....            
NP_006 HCPREAVIFKTKLDKEICADPTQKWVQDFMKHLDKKTQTPKL         
        60        70        80        90                  

>>NP_002080 (OMIM: 139110) C-X-C motif chemokine 2 precu  (107 aa)
 initn: 100 init1:  51 opt: 141  Z-score: 208.1  bits: 43.6 E(85289): 7.5e-05
Smith-Waterman score: 141; 27.1% identity (62.5% similar) in 96 aa overlap (2-97:14-106)

                           10        20        30        40        
pF1KE1             MKFISTSLLLMLLVSSLSPVQGVLEVYYTSLRCRCVQESSVFIPRRFI
                    ... ..:::.:::..   . :.     : :::.:.:  .  :  . :
NP_002 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGA--PLATELRCQCLQTLQG-IHLKNI
               10        20        30          40        50        

       50        60        70        80        90       100        
pF1KE1 DRIQILPRGNGCPRKEIIVWKKNKSIVCVDPQAEWIQRMMEVLRKRSSSTLPVPVFKRKI
       . ...   :  : . :.:.  :: . .:..: .  .....: . : ..:           
NP_002 QSVKVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN          
        60        70        80        90       100                 

        
pF1KE1 P




109 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 17:28:08 2016 done: Sun Nov  6 17:28:08 2016
 Total Scan time:  4.360 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com