Result of FASTA (omim) for
pFN21AE6166
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6166, 80 aa
1>>>pF1KE6166 80 - 80 aa - 80 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7728+/-0.000296; mu= 9.6328+/- 0.018
mean_var=42.8962+/- 8.646, 0's: 0 Z-trim(115.8): 12 B-trim: 0 in 0/50
Lambda= 0.195824
statistics sampled from 26452 (26464) to 26452 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.31), width: 16
Scan time: 3.790
The best scores are: opt bits E(85289)
XP_011511934 (OMIM: 609811) PREDICTED: cytochrome ( 81) 547 161.1 1.8e-40
XP_011511935 (OMIM: 609811) PREDICTED: cytochrome ( 81) 547 161.1 1.8e-40
XP_011511936 (OMIM: 609811) PREDICTED: cytochrome ( 81) 547 161.1 1.8e-40
XP_011511937 (OMIM: 609811) PREDICTED: cytochrome ( 81) 547 161.1 1.8e-40
XP_011511939 (OMIM: 609811) PREDICTED: cytochrome ( 81) 547 161.1 1.8e-40
XP_011511932 (OMIM: 609811) PREDICTED: cytochrome ( 81) 547 161.1 1.8e-40
XP_011511933 (OMIM: 609811) PREDICTED: cytochrome ( 81) 547 161.1 1.8e-40
XP_005248113 (OMIM: 609811) PREDICTED: cytochrome ( 81) 547 161.1 1.8e-40
NP_570972 (OMIM: 609811) cytochrome c oxidase subu ( 81) 547 161.1 1.8e-40
XP_011511940 (OMIM: 609811) PREDICTED: cytochrome ( 81) 547 161.1 1.8e-40
XP_011511938 (OMIM: 609811) PREDICTED: cytochrome ( 81) 547 161.1 1.8e-40
NP_001857 (OMIM: 300885,300887) cytochrome c oxida ( 80) 428 127.5 2.3e-30
>>XP_011511934 (OMIM: 609811) PREDICTED: cytochrome c ox (81 aa)
initn: 547 init1: 547 opt: 547 Z-score: 847.6 bits: 161.1 E(85289): 1.8e-40
Smith-Waterman score: 547; 100.0% identity (100.0% similar) in 80 aa overlap (1-80:2-81)
10 20 30 40 50
pF1KE6 MFPLARNALSSLKIQSILQSMARHSHVKHSPDFHDKYGNAVLASGTAFCVATWVFTATQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MMFPLARNALSSLKIQSILQSMARHSHVKHSPDFHDKYGNAVLASGTAFCVATWVFTATQ
10 20 30 40 50 60
60 70 80
pF1KE6 IGIEWNLSPVGRVTPKEWKHQ
:::::::::::::::::::::
XP_011 IGIEWNLSPVGRVTPKEWKHQ
70 80
>>XP_011511935 (OMIM: 609811) PREDICTED: cytochrome c ox (81 aa)
initn: 547 init1: 547 opt: 547 Z-score: 847.6 bits: 161.1 E(85289): 1.8e-40
Smith-Waterman score: 547; 100.0% identity (100.0% similar) in 80 aa overlap (1-80:2-81)
10 20 30 40 50
pF1KE6 MFPLARNALSSLKIQSILQSMARHSHVKHSPDFHDKYGNAVLASGTAFCVATWVFTATQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MMFPLARNALSSLKIQSILQSMARHSHVKHSPDFHDKYGNAVLASGTAFCVATWVFTATQ
10 20 30 40 50 60
60 70 80
pF1KE6 IGIEWNLSPVGRVTPKEWKHQ
:::::::::::::::::::::
XP_011 IGIEWNLSPVGRVTPKEWKHQ
70 80
>>XP_011511936 (OMIM: 609811) PREDICTED: cytochrome c ox (81 aa)
initn: 547 init1: 547 opt: 547 Z-score: 847.6 bits: 161.1 E(85289): 1.8e-40
Smith-Waterman score: 547; 100.0% identity (100.0% similar) in 80 aa overlap (1-80:2-81)
10 20 30 40 50
pF1KE6 MFPLARNALSSLKIQSILQSMARHSHVKHSPDFHDKYGNAVLASGTAFCVATWVFTATQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MMFPLARNALSSLKIQSILQSMARHSHVKHSPDFHDKYGNAVLASGTAFCVATWVFTATQ
10 20 30 40 50 60
60 70 80
pF1KE6 IGIEWNLSPVGRVTPKEWKHQ
:::::::::::::::::::::
XP_011 IGIEWNLSPVGRVTPKEWKHQ
70 80
>>XP_011511937 (OMIM: 609811) PREDICTED: cytochrome c ox (81 aa)
initn: 547 init1: 547 opt: 547 Z-score: 847.6 bits: 161.1 E(85289): 1.8e-40
Smith-Waterman score: 547; 100.0% identity (100.0% similar) in 80 aa overlap (1-80:2-81)
10 20 30 40 50
pF1KE6 MFPLARNALSSLKIQSILQSMARHSHVKHSPDFHDKYGNAVLASGTAFCVATWVFTATQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MMFPLARNALSSLKIQSILQSMARHSHVKHSPDFHDKYGNAVLASGTAFCVATWVFTATQ
10 20 30 40 50 60
60 70 80
pF1KE6 IGIEWNLSPVGRVTPKEWKHQ
:::::::::::::::::::::
XP_011 IGIEWNLSPVGRVTPKEWKHQ
70 80
>>XP_011511939 (OMIM: 609811) PREDICTED: cytochrome c ox (81 aa)
initn: 547 init1: 547 opt: 547 Z-score: 847.6 bits: 161.1 E(85289): 1.8e-40
Smith-Waterman score: 547; 100.0% identity (100.0% similar) in 80 aa overlap (1-80:2-81)
10 20 30 40 50
pF1KE6 MFPLARNALSSLKIQSILQSMARHSHVKHSPDFHDKYGNAVLASGTAFCVATWVFTATQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MMFPLARNALSSLKIQSILQSMARHSHVKHSPDFHDKYGNAVLASGTAFCVATWVFTATQ
10 20 30 40 50 60
60 70 80
pF1KE6 IGIEWNLSPVGRVTPKEWKHQ
:::::::::::::::::::::
XP_011 IGIEWNLSPVGRVTPKEWKHQ
70 80
>>XP_011511932 (OMIM: 609811) PREDICTED: cytochrome c ox (81 aa)
initn: 547 init1: 547 opt: 547 Z-score: 847.6 bits: 161.1 E(85289): 1.8e-40
Smith-Waterman score: 547; 100.0% identity (100.0% similar) in 80 aa overlap (1-80:2-81)
10 20 30 40 50
pF1KE6 MFPLARNALSSLKIQSILQSMARHSHVKHSPDFHDKYGNAVLASGTAFCVATWVFTATQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MMFPLARNALSSLKIQSILQSMARHSHVKHSPDFHDKYGNAVLASGTAFCVATWVFTATQ
10 20 30 40 50 60
60 70 80
pF1KE6 IGIEWNLSPVGRVTPKEWKHQ
:::::::::::::::::::::
XP_011 IGIEWNLSPVGRVTPKEWKHQ
70 80
>>XP_011511933 (OMIM: 609811) PREDICTED: cytochrome c ox (81 aa)
initn: 547 init1: 547 opt: 547 Z-score: 847.6 bits: 161.1 E(85289): 1.8e-40
Smith-Waterman score: 547; 100.0% identity (100.0% similar) in 80 aa overlap (1-80:2-81)
10 20 30 40 50
pF1KE6 MFPLARNALSSLKIQSILQSMARHSHVKHSPDFHDKYGNAVLASGTAFCVATWVFTATQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MMFPLARNALSSLKIQSILQSMARHSHVKHSPDFHDKYGNAVLASGTAFCVATWVFTATQ
10 20 30 40 50 60
60 70 80
pF1KE6 IGIEWNLSPVGRVTPKEWKHQ
:::::::::::::::::::::
XP_011 IGIEWNLSPVGRVTPKEWKHQ
70 80
>>XP_005248113 (OMIM: 609811) PREDICTED: cytochrome c ox (81 aa)
initn: 547 init1: 547 opt: 547 Z-score: 847.6 bits: 161.1 E(85289): 1.8e-40
Smith-Waterman score: 547; 100.0% identity (100.0% similar) in 80 aa overlap (1-80:2-81)
10 20 30 40 50
pF1KE6 MFPLARNALSSLKIQSILQSMARHSHVKHSPDFHDKYGNAVLASGTAFCVATWVFTATQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MMFPLARNALSSLKIQSILQSMARHSHVKHSPDFHDKYGNAVLASGTAFCVATWVFTATQ
10 20 30 40 50 60
60 70 80
pF1KE6 IGIEWNLSPVGRVTPKEWKHQ
:::::::::::::::::::::
XP_005 IGIEWNLSPVGRVTPKEWKHQ
70 80
>>NP_570972 (OMIM: 609811) cytochrome c oxidase subunit (81 aa)
initn: 547 init1: 547 opt: 547 Z-score: 847.6 bits: 161.1 E(85289): 1.8e-40
Smith-Waterman score: 547; 100.0% identity (100.0% similar) in 80 aa overlap (1-80:2-81)
10 20 30 40 50
pF1KE6 MFPLARNALSSLKIQSILQSMARHSHVKHSPDFHDKYGNAVLASGTAFCVATWVFTATQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_570 MMFPLARNALSSLKIQSILQSMARHSHVKHSPDFHDKYGNAVLASGTAFCVATWVFTATQ
10 20 30 40 50 60
60 70 80
pF1KE6 IGIEWNLSPVGRVTPKEWKHQ
:::::::::::::::::::::
NP_570 IGIEWNLSPVGRVTPKEWKHQ
70 80
>>XP_011511940 (OMIM: 609811) PREDICTED: cytochrome c ox (81 aa)
initn: 547 init1: 547 opt: 547 Z-score: 847.6 bits: 161.1 E(85289): 1.8e-40
Smith-Waterman score: 547; 100.0% identity (100.0% similar) in 80 aa overlap (1-80:2-81)
10 20 30 40 50
pF1KE6 MFPLARNALSSLKIQSILQSMARHSHVKHSPDFHDKYGNAVLASGTAFCVATWVFTATQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MMFPLARNALSSLKIQSILQSMARHSHVKHSPDFHDKYGNAVLASGTAFCVATWVFTATQ
10 20 30 40 50 60
60 70 80
pF1KE6 IGIEWNLSPVGRVTPKEWKHQ
:::::::::::::::::::::
XP_011 IGIEWNLSPVGRVTPKEWKHQ
70 80
80 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 10:00:41 2016 done: Tue Nov 8 10:00:42 2016
Total Scan time: 3.790 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]