Result of FASTA (omim) for pFN21AE4305
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4305, 305 aa
  1>>>pF1KE4305 305 - 305 aa - 305 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0109+/-0.000372; mu= 17.0033+/- 0.023
 mean_var=61.9463+/-12.596, 0's: 0 Z-trim(113.1): 48  B-trim: 0 in 0/51
 Lambda= 0.162955
 statistics sampled from 22216 (22264) to 22216 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.633), E-opt: 0.2 (0.261), width:  16
 Scan time:  6.710

The best scores are:                                      opt bits E(85289)
NP_006571 (OMIM: 248250,603959) claudin-16 [Homo s ( 305) 2111 504.8 8.6e-143
NP_001298 (OMIM: 609131) claudin-7 isoform 1 precu ( 211)  292 77.1 3.4e-14
NP_001171951 (OMIM: 609131) claudin-7 isoform 1 pr ( 211)  292 77.1 3.4e-14
NP_066924 (OMIM: 603718,607626) claudin-1 [Homo sa ( 211)  280 74.3 2.4e-13
NP_001172009 (OMIM: 615778) claudin-15 [Homo sapie ( 228)  259 69.4 7.9e-12
NP_055158 (OMIM: 615778) claudin-15 [Homo sapiens] ( 228)  259 69.4 7.9e-12
NP_001296 (OMIM: 602909) claudin-4 [Homo sapiens]  ( 209)  232 63.0   6e-10
NP_066192 (OMIM: 615799) claudin-9 [Homo sapiens]  ( 217)  230 62.5 8.5e-10
NP_955360 (OMIM: 611231) claudin-8 [Homo sapiens]  ( 225)  229 62.3   1e-09
NP_057453 (OMIM: 609210) claudin-18 isoform 1 prec ( 261)  226 61.6 1.9e-09
NP_001297 (OMIM: 602910) claudin-3 [Homo sapiens]  ( 220)  225 61.3 1.9e-09
NP_683763 (OMIM: 248190,610036) claudin-19 isoform ( 224)  225 61.4   2e-09
NP_001116867 (OMIM: 248190,610036) claudin-19 isof ( 211)  224 61.1 2.2e-09
NP_067018 (OMIM: 615798) claudin-6 precursor [Homo ( 220)  221 60.4 3.7e-09
NP_652763 (OMIM: 605608,614035) claudin-14 [Homo s ( 239)  216 59.3   9e-09
NP_001139551 (OMIM: 605608,614035) claudin-14 [Hom ( 239)  216 59.3   9e-09
NP_001139550 (OMIM: 605608,614035) claudin-14 [Hom ( 239)  216 59.3   9e-09
NP_001139549 (OMIM: 605608,614035) claudin-14 [Hom ( 239)  216 59.3   9e-09
NP_036262 (OMIM: 605608,614035) claudin-14 [Homo s ( 239)  216 59.3   9e-09
NP_001164563 (OMIM: 300520) claudin-2 [Homo sapien ( 230)  210 57.8 2.3e-08
NP_001164566 (OMIM: 300520) claudin-2 [Homo sapien ( 230)  210 57.8 2.3e-08
NP_065117 (OMIM: 300520) claudin-2 [Homo sapiens]  ( 230)  210 57.8 2.3e-08
NP_001002026 (OMIM: 609210) claudin-18 isoform 2 [ ( 261)  207 57.2 4.2e-08
NP_001171952 (OMIM: 609131) claudin-7 isoform 2 pr ( 145)  195 54.2 1.8e-07
NP_036263 (OMIM: 617005) claudin-17 [Homo sapiens] ( 224)  167 47.7 2.5e-05
NP_001172002 (OMIM: 611232) claudin-12 [Homo sapie ( 244)  165 47.3 3.7e-05
NP_036261 (OMIM: 611232) claudin-12 [Homo sapiens] ( 244)  165 47.3 3.7e-05
NP_001172001 (OMIM: 611232) claudin-12 [Homo sapie ( 244)  165 47.3 3.7e-05
NP_001172046 (OMIM: 248190,610036) claudin-19 isof ( 218)  164 47.0   4e-05
NP_919260 (OMIM: 609203) claudin-23 [Homo sapiens] ( 292)  141 41.7  0.0022


>>NP_006571 (OMIM: 248250,603959) claudin-16 [Homo sapie  (305 aa)
 initn: 2111 init1: 2111 opt: 2111  Z-score: 2684.6  bits: 504.8 E(85289): 8.6e-143
Smith-Waterman score: 2111; 100.0% identity (100.0% similar) in 305 aa overlap (1-305:1-305)

               10        20        30        40        50        60
pF1KE4 MTSRTPLLVTACLYYSYCNSRHLQQGVRKSKRPVFSHCQVPETQKTDTRHLSGARAGVCP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MTSRTPLLVTACLYYSYCNSRHLQQGVRKSKRPVFSHCQVPETQKTDTRHLSGARAGVCP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 CCHPDGLLATMRDLLQYIACFFAFFSAGFLIVATWTDCWMVNADDSLEVSTKCRGLWWEC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 CCHPDGLLATMRDLLQYIACFFAFFSAGFLIVATWTDCWMVNADDSLEVSTKCRGLWWEC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 VTNAFDGIRTCDEYDSILAEHPLKLVVTRALMITADILAGFGFLTLLLGLDCVKFLPDEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 VTNAFDGIRTCDEYDSILAEHPLKLVVTRALMITADILAGFGFLTLLLGLDCVKFLPDEP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 YIKVRICFVAGATLLIAGTPGIIGSVWYAVDVYVERSTLVLHNIFLGIQYKFGWSCWLGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 YIKVRICFVAGATLLIAGTPGIIGSVWYAVDVYVERSTLVLHNIFLGIQYKFGWSCWLGM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 AGSLGCFLAGAVLTCCLYLFKDVGPERNYPYSLRKAYSAAGVSMAKSYSAPRTETAKMYA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 AGSLGCFLAGAVLTCCLYLFKDVGPERNYPYSLRKAYSAAGVSMAKSYSAPRTETAKMYA
              250       260       270       280       290       300

            
pF1KE4 VDTRV
       :::::
NP_006 VDTRV
            

>>NP_001298 (OMIM: 609131) claudin-7 isoform 1 precursor  (211 aa)
 initn: 280 init1: 126 opt: 292  Z-score: 375.8  bits: 77.1 E(85289): 3.4e-14
Smith-Waterman score: 292; 28.8% identity (62.9% similar) in 205 aa overlap (75-272:6-204)

           50        60        70        80        90       100    
pF1KE4 KTDTRHLSGARAGVCPCCHPDGLLATMRDLLQYIACFFAFFSAGFLIVATWTDCWMVNA-
                                     :: ..  .:...   :.. :    :.... 
NP_001                          MANSGLQLLGFSMALLGWVGLVACTAIPQWQMSSY
                                        10        20        30     

             110       120       130       140       150       160 
pF1KE4 --DDSLEVSTKCRGLWWECVTNAFDGIRTCDEYDSILAEHPLKLVVTRALMITADILAGF
         :. . ...  .::: .:::..  :. .:  :::.::     : .:::::... .:. .
NP_001 AGDNIITAQAMYKGLWMDCVTQS-TGMMSCKMYDSVLALSA-ALQATRALMVVSLVLGFL
          40        50         60        70         80        90   

             170       180       190       200       210        220
pF1KE4 GFLTLLLGLDCVKFLPDEPYIKVRICFVAGATLLIAGTPGIIGSVWYAVDVYVE-RSTLV
       ....  .:. :..   :.   :.:: . .:  ...::  ....  ::. .. ..  . :.
NP_001 AMFVATMGMKCTRCGGDDKVKKARIAMGGGIIFIVAGLAALVACSWYGHQIVTDFYNPLI
           100       110       120       130       140       150   

              230       240       250        260         270       
pF1KE4 LHNIFLGIQYKFGWSCWLGMAGSLGCFLAGAVLTC-CLYLFKDVGPE--RNYPYSLRKAY
         ::    .:.:: . ..: :::   .:.::.:.: :    . .: .  :.:: :     
NP_001 PTNI----KYEFGPAIFIGWAGSALVILGGALLSCSCPGNESKAGYRVPRSYPKSNSSKE
               160       170       180       190       200         

       280       290       300     
pF1KE4 SAAGVSMAKSYSAPRTETAKMYAVDTRV
                                   
NP_001 YV                          
     210                           

>>NP_001171951 (OMIM: 609131) claudin-7 isoform 1 precur  (211 aa)
 initn: 280 init1: 126 opt: 292  Z-score: 375.8  bits: 77.1 E(85289): 3.4e-14
Smith-Waterman score: 292; 28.8% identity (62.9% similar) in 205 aa overlap (75-272:6-204)

           50        60        70        80        90       100    
pF1KE4 KTDTRHLSGARAGVCPCCHPDGLLATMRDLLQYIACFFAFFSAGFLIVATWTDCWMVNA-
                                     :: ..  .:...   :.. :    :.... 
NP_001                          MANSGLQLLGFSMALLGWVGLVACTAIPQWQMSSY
                                        10        20        30     

             110       120       130       140       150       160 
pF1KE4 --DDSLEVSTKCRGLWWECVTNAFDGIRTCDEYDSILAEHPLKLVVTRALMITADILAGF
         :. . ...  .::: .:::..  :. .:  :::.::     : .:::::... .:. .
NP_001 AGDNIITAQAMYKGLWMDCVTQS-TGMMSCKMYDSVLALSA-ALQATRALMVVSLVLGFL
          40        50         60        70         80        90   

             170       180       190       200       210        220
pF1KE4 GFLTLLLGLDCVKFLPDEPYIKVRICFVAGATLLIAGTPGIIGSVWYAVDVYVE-RSTLV
       ....  .:. :..   :.   :.:: . .:  ...::  ....  ::. .. ..  . :.
NP_001 AMFVATMGMKCTRCGGDDKVKKARIAMGGGIIFIVAGLAALVACSWYGHQIVTDFYNPLI
           100       110       120       130       140       150   

              230       240       250        260         270       
pF1KE4 LHNIFLGIQYKFGWSCWLGMAGSLGCFLAGAVLTC-CLYLFKDVGPE--RNYPYSLRKAY
         ::    .:.:: . ..: :::   .:.::.:.: :    . .: .  :.:: :     
NP_001 PTNI----KYEFGPAIFIGWAGSALVILGGALLSCSCPGNESKAGYRVPRSYPKSNSSKE
               160       170       180       190       200         

       280       290       300     
pF1KE4 SAAGVSMAKSYSAPRTETAKMYAVDTRV
                                   
NP_001 YV                          
     210                           

>>NP_066924 (OMIM: 603718,607626) claudin-1 [Homo sapien  (211 aa)
 initn: 208 init1: 146 opt: 280  Z-score: 360.5  bits: 74.3 E(85289): 2.4e-13
Smith-Waterman score: 281; 27.4% identity (58.4% similar) in 219 aa overlap (74-288:8-210)

            50        60        70        80        90       100   
pF1KE4 QKTDTRHLSGARAGVCPCCHPDGLLATMRDLLQYIACFFAFFSAGFLIVATWTDCWMVNA
                                     :: .:  :.....:   ::.:    : . .
NP_066                        MANAGLQLLGFILAFLGWIGA---IVSTALPQWRIYS
                                      10        20           30    

              110       120       130       140       150       160
pF1KE4 ---DDSLEVSTKCRGLWWECVTNAFDGIRTCDEYDSILAEHPLKLVVTRALMITADILAG
          :. . ...  .:::  ::...   :. :  .::.:      : .:::::... .:. 
NP_066 YAGDNIVTAQAMYEGLWMSCVSQSTGQIQ-CKVFDSLLNLSST-LQATRALMVVGILLGV
           40        50        60         70         80        90  

              170       180       190       200       210       220
pF1KE4 FGFLTLLLGLDCVKFLPDEPYIKVRICFVAGATLLIAGTPGIIGSVWYAVDVYVERSTLV
       .....  .:. :.: : :.   :.:.  ..:: .:.::   .....::.  .  :    .
NP_066 IAIFVATVGMKCMKCLEDDEVQKMRMAVIGGAIFLLAGLAILVATAWYGNRIVQEFYDPM
            100       110       120       130       140       150  

              230       240       250        260       270         
pF1KE4 LHNIFLGIQYKFGWSCWLGMAGSLGCFLAGAVLTC-CLYLFKDVGPERNYPYSLRKAYSA
            .. .:.:: . . : :..  :.:.::.: : :        :...  :   . :  
NP_066 TP---VNARYEFGQALFTGWAAASLCLLGGALLCCSC--------PRKTTSYPTPRPYPK
               160       170       180               190       200 

     280       290       300     
pF1KE4 AGVSMAKSYSAPRTETAKMYAVDTRV
        . : .:.:                 
NP_066 PAPSSGKDYV                
             210                 

>>NP_001172009 (OMIM: 615778) claudin-15 [Homo sapiens]   (228 aa)
 initn: 171 init1: 133 opt: 259  Z-score: 333.4  bits: 69.4 E(85289): 7.9e-12
Smith-Waterman score: 259; 30.9% identity (59.9% similar) in 207 aa overlap (82-279:8-201)

              60        70        80          90         100       
pF1KE4 SGARAGVCPCCHPDGLLATMRDLLQYIACFFAFFSA--GFLI--VATWTDCWMVNA--DD
                                     :.:: :  :.:.  :.  .. : :..   .
NP_001                        MSMAVETFGFFMATVGLLMLGVTLPNSYWRVSTVHGN
                                      10        20        30       

         110       120       130       140       150       160     
pF1KE4 SLEVSTKCRGLWWECVTNAFDGIRTCDEYDSILAEHPLKLVVTRALMITADILAGF-GFL
        . ..:  ..::. :.:... :. .: :. :.::     . . ::::::: :: :: :.:
NP_001 VITTNTIFENLWFSCATDSL-GVYNCWEFPSMLALSGY-IQACRALMITA-ILLGFLGLL
        40        50         60        70         80         90    

          170       180       190       200       210       220    
pF1KE4 TLLLGLDCVKFLPDEPYIKVRICFVAGATLLIAGTPGIIGSVWYAVDVYVERSTLVLHNI
         . :: :...   :   :...  .:::  ..::  :...  ::: ..    .   .  .
NP_001 LGIAGLRCTNIGGLELSRKAKLAATAGALHILAGICGMVAISWYAFNI----TRDFFDPL
          100       110       120       130       140           150

          230       240       250         260       270       280  
pF1KE4 FLGIQYKFGWSCWLGMAGSLGCFLAGAVL--TCCLYLFKDVGPERNYPYSLRKAYSAAGV
       . : .:..: . .:: ..::  .:.:  :  .::       : ...   : :. :.:   
NP_001 YPGTKYELGPALYLGWSASLISILGGLCLCSACC------CGSDEDPAASARRPYQAPVS
              160       170       180             190       200    

            290       300      
pF1KE4 SMAKSYSAPRTETAKMYAVDTRV 
                               
NP_001 VMPVATSDQEGDSSFGKYGRNAYV
          210       220        

>>NP_055158 (OMIM: 615778) claudin-15 [Homo sapiens]      (228 aa)
 initn: 171 init1: 133 opt: 259  Z-score: 333.4  bits: 69.4 E(85289): 7.9e-12
Smith-Waterman score: 259; 30.9% identity (59.9% similar) in 207 aa overlap (82-279:8-201)

              60        70        80          90         100       
pF1KE4 SGARAGVCPCCHPDGLLATMRDLLQYIACFFAFFSA--GFLI--VATWTDCWMVNA--DD
                                     :.:: :  :.:.  :.  .. : :..   .
NP_055                        MSMAVETFGFFMATVGLLMLGVTLPNSYWRVSTVHGN
                                      10        20        30       

         110       120       130       140       150       160     
pF1KE4 SLEVSTKCRGLWWECVTNAFDGIRTCDEYDSILAEHPLKLVVTRALMITADILAGF-GFL
        . ..:  ..::. :.:... :. .: :. :.::     . . ::::::: :: :: :.:
NP_055 VITTNTIFENLWFSCATDSL-GVYNCWEFPSMLALSGY-IQACRALMITA-ILLGFLGLL
        40        50         60        70         80         90    

          170       180       190       200       210       220    
pF1KE4 TLLLGLDCVKFLPDEPYIKVRICFVAGATLLIAGTPGIIGSVWYAVDVYVERSTLVLHNI
         . :: :...   :   :...  .:::  ..::  :...  ::: ..    .   .  .
NP_055 LGIAGLRCTNIGGLELSRKAKLAATAGALHILAGICGMVAISWYAFNI----TRDFFDPL
          100       110       120       130       140           150

          230       240       250         260       270       280  
pF1KE4 FLGIQYKFGWSCWLGMAGSLGCFLAGAVL--TCCLYLFKDVGPERNYPYSLRKAYSAAGV
       . : .:..: . .:: ..::  .:.:  :  .::       : ...   : :. :.:   
NP_055 YPGTKYELGPALYLGWSASLISILGGLCLCSACC------CGSDEDPAASARRPYQAPVS
              160       170       180             190       200    

            290       300      
pF1KE4 SMAKSYSAPRTETAKMYAVDTRV 
                               
NP_055 VMPVATSDQEGDSSFGKYGRNAYV
          210       220        

>>NP_001296 (OMIM: 602909) claudin-4 [Homo sapiens]       (209 aa)
 initn: 135 init1:  46 opt: 232  Z-score: 299.6  bits: 63.0 E(85289): 6e-10
Smith-Waterman score: 262; 32.6% identity (59.6% similar) in 193 aa overlap (99-288:30-208)

       70        80        90       100          110       120     
pF1KE4 ATMRDLLQYIACFFAFFSAGFLIVATWTDCWMVNA---DDSLEVSTKCRGLWWECVTNAF
                                     : :.:   .. .  .:  .::: .::... 
NP_001  MASMGLQVMGIALAVLGWLAVMLCCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQS-
                10        20        30        40        50         

         130       140       150       160       170       180     
pF1KE4 DGIRTCDEYDSILAEHPLKLVVTRALMITADILAGFGFLTLLLGLDCVKFLPDEPYIKVR
        :   :  :::.::  :  : ..:::.: . :.:..: :  ..:  :.. : ::   :..
NP_001 TGQMQCKVYDSLLAL-PQDLQAARALVIISIIVAALGVLLSVVGGKCTNCLEDES-AKAK
       60        70         80        90       100       110       

         190       200       210       220       230       240     
pF1KE4 ICFVAGATLLIAGTPGIIGSVWYAVDVYVERSTLVLHNIFLGIQYKFGWSCWLGMAGSLG
         .:::...:.::   :.   : : ..  .  . .. .   : . ..: : ..: :.: :
NP_001 TMIVAGVVFLLAGLMVIVPVSWTAHNIIQDFYNPLVAS---GQKREMGASLYVGWAAS-G
        120       130       140       150          160       170   

         250       260       270       280       290       300     
pF1KE4 CFLAGAVLTCCLYLFKDVGPERNYPYSLRKAYSAAGVSMAKSYSAPRTETAKMYAVDTRV
        .: :. : ::     .  :. . ::: .  ::::  . :..:                 
NP_001 LLLLGGGLLCC-----NCPPRTDKPYSAK--YSAARSAAASNYV                
            180            190         200                         

>>NP_066192 (OMIM: 615799) claudin-9 [Homo sapiens]       (217 aa)
 initn: 211 init1:  80 opt: 230  Z-score: 296.8  bits: 62.5 E(85289): 8.5e-10
Smith-Waterman score: 231; 32.5% identity (57.1% similar) in 191 aa overlap (99-285:30-208)

       70        80        90       100         110        120     
pF1KE4 ATMRDLLQYIACFFAFFSAGFLIVATWTDCWMVNA--DDSLEVSTKC-RGLWWECVTNAF
                                     : :.:   .:. :.    .:::  ::... 
NP_066  MASTGLELLGMTLAVLGWLGTLVSCALPLWKVTAFIGNSIVVAQVVWEGLWMSCVVQS-
                10        20        30        40        50         

         130       140       150       160       170       180     
pF1KE4 DGIRTCDEYDSILAEHPLKLVVTRALMITADILAGFGFLTLLLGLDCVKFLPDEPYIKVR
        :   :  :::.::  :  : ..::: . : .:: .:.:. . : .:.  . ::   :.:
NP_066 TGQMQCKVYDSLLAL-PQDLQAARALCVIALLLALLGLLVAITGAQCTTCVEDEG-AKAR
       60        70         80        90       100       110       

         190       200       210        220       230       240    
pF1KE4 ICFVAGATLLIAGTPGIIGSVWYAVDVYVE-RSTLVLHNIFLGIQYKFGWSCWLGMAGSL
       : ..::. ::.::   .:   : :  .  .  . :: .    ... ..: : .:: :.. 
NP_066 IVLTAGVILLLAGILVLIPVCWTAHAIIQDFYNPLVAE----ALKRELGASLYLGWAAAA
        120       130       140       150           160       170  

          250       260       270       280       290       300    
pF1KE4 GCFLAGAVLTCCLYLFKDVGPERNYPYSLRKAYSAAGVSMAKSYSAPRTETAKMYAVDTR
         .:.:..: ::        :. . : . : .::  . : :                   
NP_066 LLMLGGGLL-CCTC----PPPQVERPRGPRLGYSIPSRSGASGLDKRDYV          
            180            190       200       210                 

        
pF1KE4 V

>>NP_955360 (OMIM: 611231) claudin-8 [Homo sapiens]       (225 aa)
 initn: 123 init1:  49 opt: 229  Z-score: 295.3  bits: 62.3 E(85289): 1e-09
Smith-Waterman score: 229; 27.5% identity (60.8% similar) in 189 aa overlap (91-273:22-199)

               70        80        90       100         110        
pF1KE4 CCHPDGLLATMRDLLQYIACFFAFFSAGFLIVATWTDCWMVNA--DDSLEVSTKC-RGLW
                                     ...:    : :.:  .... :  .  .:::
NP_955          MATHALEIAGLFLGGVGMVGTVAVTVMPQWRVSAFIENNIVVFENFWEGLW
                        10        20        30        40        50 

       120       130        140       150       160       170      
pF1KE4 WECVTNAFDGIRT-CDEYDSILAEHPLKLVVTRALMITADILAGFGFLTLLLGLDCVKFL
        .:: .:  .::  :  :::.::  :  : ..:.:: .:.... ..:.  .::. :..  
NP_955 MNCVRQA--NIRMQCKIYDSLLALSP-DLQAARGLMCAASVMSFLAFMMAILGMKCTRCT
                60        70         80        90       100        

        180       190       200       210       220       230      
pF1KE4 PDEPYIKVRICFVAGATLLIAGTPGIIGSVWYAVDVYVERSTLVLHNIFLGIQYK--FGW
        :.  .:..: ..::  ..:.:   .:   : :  .  .     ..: ....  :  .: 
NP_955 GDNEKVKAHILLTAGIIFIITGMVVLIPVSWVANAIIRD-----FYNSIVNVAQKRELGE
      110       120       130       140            150       160   

          240       250       260       270       280       290    
pF1KE4 SCWLGMAGSLGCFLAGAVLTCCLYLFKDVGPERNYPYSLRKAYSAAGVSMAKSYSAPRTE
       . .:: . .:  ...:..: ::..  ..     .: ::.                     
NP_955 ALYLGWTTAL-VLIVGGALFCCVFCCNE--KSSSYRYSIPSHRTTQKSYHTGKKSPSVYS
           170        180       190         200       210       220

          300     
pF1KE4 TAKMYAVDTRV
                  
NP_955 RSQYV      
                  

>>NP_057453 (OMIM: 609210) claudin-18 isoform 1 precurso  (261 aa)
 initn: 120 init1:  72 opt: 226  Z-score: 290.6  bits: 61.6 E(85289): 1.9e-09
Smith-Waterman score: 227; 26.9% identity (57.4% similar) in 223 aa overlap (76-285:7-219)

          50        60        70        80        90       100     
pF1KE4 TDTRHLSGARAGVCPCCHPDGLLATMRDLLQYIACFFAFFSAGFLIVATWTDCWMVNA--
                                     : .: ...... .  :.::  : : ..   
NP_057                         MSTTTCQVVAFLLSILGLAGCIAATGMDMWSTQDLY
                                       10        20        30      

           110       120       130       140       150       160   
pF1KE4 DDSLEVSTKCRGLWWECVTNAFDGIRTCDEYDSILAEHPLKLVVTRALMITADILAGFGF
       :. .    . .:::  :: .. .:.  :  : .::.  :  : ..:::::.. .:...:.
NP_057 DNPVTSVFQYEGLWRSCVRQS-SGFTECRPYFTILGL-PAMLQAVRALMIVGIVLGAIGL
         40        50         60        70         80        90    

           170       180       190       200       210       220   
pF1KE4 LTLLLGLDCVKFLPDEPYIKVRICFVAGATLLIAGTPGIIGSVWYAVDVYVERSTLVLHN
       :. ...: :...   :   :. . ...:  ....:  .: :   .: .. :    .   :
NP_057 LVSIFALKCIRIGSMEDSAKANMTLTSGIMFIVSGLCAIAGVSVFA-NMLVTNFWMSTAN
          100       110       120       130       140        150   

                    230        240       250       260        270  
pF1KE4 IFLGI---------QYKFGWSCWLG-MAGSLGCFLAGAVLTCCLYLFKDVGPER-NYPYS
       .. :.         .: :: . ..: .::  :  : :.:. :     . ..::. ::   
NP_057 MYTGMGGMVQTVQTRYTFGAALFVGWVAG--GLTLIGGVMMC--IACRGLAPEETNYKAV
           160       170       180         190         200         

            280       290       300                           
pF1KE4 LRKAYSAAGVSMAKSYSAPRTETAKMYAVDTRV                      
          .: :.: :.:                                          
NP_057 ---SYHASGHSVAYKPGGFKASTGFGSNTKNKKIYDGGARTEDEVQSYPSKHDYV
        210       220       230       240       250       260 




305 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 23:28:38 2016 done: Sat Nov  5 23:28:39 2016
 Total Scan time:  6.710 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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