FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1740, 244 aa 1>>>pF1KE1740 244 - 244 aa - 244 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.5604+/-0.000394; mu= 10.9059+/- 0.025 mean_var=164.0993+/-32.799, 0's: 0 Z-trim(118.7): 458 B-trim: 0 in 0/50 Lambda= 0.100120 statistics sampled from 31441 (31912) to 31441 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.721), E-opt: 0.2 (0.374), width: 16 Scan time: 6.010 The best scores are: opt bits E(85289) NP_004788 (OMIM: 605441,612556) adiponectin precur ( 244) 1705 257.6 1.4e-68 NP_001171271 (OMIM: 605441,612556) adiponectin pre ( 244) 1705 257.6 1.4e-68 NP_001290066 (OMIM: 614285) complement C1q and tum ( 333) 642 104.2 2.9e-22 NP_848635 (OMIM: 614285) complement C1q and tumor ( 333) 642 104.2 2.9e-22 NP_001290067 (OMIM: 614285) complement C1q and tum ( 333) 642 104.2 2.9e-22 NP_056460 (OMIM: 605670,608752) complement C1q tum ( 243) 537 88.9 8.8e-18 NP_001265360 (OMIM: 605670,608752) complement C1q ( 243) 537 88.9 8.8e-18 XP_011533735 (OMIM: 120110,156500) PREDICTED: coll ( 680) 513 85.9 1.9e-16 NP_000484 (OMIM: 120110,156500) collagen alpha-1(X ( 680) 513 85.9 1.9e-16 XP_011533734 (OMIM: 120110,156500) PREDICTED: coll ( 680) 513 85.9 1.9e-16 XP_016865738 (OMIM: 120110,156500) PREDICTED: coll ( 680) 513 85.9 1.9e-16 XP_006715396 (OMIM: 120110,156500) PREDICTED: coll ( 680) 513 85.9 1.9e-16 XP_016865737 (OMIM: 120110,156500) PREDICTED: coll ( 680) 513 85.9 1.9e-16 NP_001841 (OMIM: 120251) collagen alpha-1(VIII) ch ( 744) 506 85.0 4.1e-16 NP_065084 (OMIM: 120251) collagen alpha-1(VIII) ch ( 744) 506 85.0 4.1e-16 NP_001281276 (OMIM: 120252,136800,609140) collagen ( 638) 501 84.2 6.1e-16 NP_005193 (OMIM: 120252,136800,609140) collagen al ( 703) 501 84.2 6.5e-16 XP_005270534 (OMIM: 120252,136800,609140) PREDICTE ( 780) 501 84.3 7e-16 NP_000482 (OMIM: 120570,613652) complement C1q sub ( 253) 469 79.1 8.2e-15 XP_011540361 (OMIM: 120570,613652) PREDICTED: comp ( 253) 469 79.1 8.2e-15 NP_006679 (OMIM: 611586) C1q-related factor precur ( 258) 463 78.2 1.5e-14 NP_001010908 (OMIM: 615227) complement C1q-like pr ( 255) 452 76.6 4.5e-14 NP_001008224 (OMIM: 615229) complement C1q-like pr ( 238) 428 73.1 4.8e-13 NP_057075 (OMIM: 120550,613652) complement C1q sub ( 245) 415 71.3 1.8e-12 XP_011536572 (OMIM: 615229) PREDICTED: complement ( 227) 387 67.2 2.8e-11 XP_016879615 (OMIM: 610365) PREDICTED: complement ( 199) 369 64.5 1.6e-10 NP_940996 (OMIM: 610365) complement C1q tumor necr ( 199) 369 64.5 1.6e-10 NP_940995 (OMIM: 610365) complement C1q tumor necr ( 281) 369 64.7 2e-10 NP_112230 (OMIM: 610365) complement C1q tumor necr ( 281) 369 64.7 2e-10 NP_699203 (OMIM: 610365) complement C1q tumor necr ( 281) 369 64.7 2e-10 XP_006721729 (OMIM: 610365) PREDICTED: complement ( 291) 369 64.7 2e-10 XP_006721727 (OMIM: 610365) PREDICTED: complement ( 330) 369 64.8 2.2e-10 XP_006721726 (OMIM: 610365) PREDICTED: complement ( 379) 369 64.8 2.4e-10 NP_112207 (OMIM: 612045) complement C1q tumor necr ( 246) 340 60.4 3.3e-09 XP_011528159 (OMIM: 614910) PREDICTED: complement ( 259) 339 60.3 3.7e-09 XP_016884060 (OMIM: 614910) PREDICTED: complement ( 259) 339 60.3 3.7e-09 XP_016884061 (OMIM: 614910) PREDICTED: complement ( 259) 339 60.3 3.7e-09 XP_016884059 (OMIM: 614910) PREDICTED: complement ( 259) 339 60.3 3.7e-09 XP_016884062 (OMIM: 614910) PREDICTED: complement ( 259) 339 60.3 3.7e-09 XP_016884063 (OMIM: 614910) PREDICTED: complement ( 259) 339 60.3 3.7e-09 XP_016884058 (OMIM: 614910) PREDICTED: complement ( 278) 339 60.4 3.9e-09 NP_114116 (OMIM: 614910) complement C1q tumor necr ( 278) 339 60.4 3.9e-09 NP_872292 (OMIM: 614910) complement C1q tumor necr ( 278) 339 60.4 3.9e-09 NP_852100 (OMIM: 612045) complement C1q tumor necr ( 319) 337 60.1 5.2e-09 XP_011520785 (OMIM: 614147) PREDICTED: complement ( 252) 302 55.0 1.5e-07 NP_997302 (OMIM: 614147) complement C1q tumor necr ( 252) 302 55.0 1.5e-07 NP_758957 (OMIM: 120575,613652) complement C1q sub ( 245) 273 50.8 2.7e-06 NP_001107573 (OMIM: 120575,613652) complement C1q ( 245) 273 50.8 2.7e-06 XP_011539026 (OMIM: 120326) PREDICTED: collagen al (1563) 278 52.4 5.5e-06 XP_016869755 (OMIM: 120215,130000) PREDICTED: coll (1715) 275 52.0 7.8e-06 >>NP_004788 (OMIM: 605441,612556) adiponectin precursor (244 aa) initn: 1705 init1: 1705 opt: 1705 Z-score: 1352.0 bits: 257.6 E(85289): 1.4e-68 Smith-Waterman score: 1705; 100.0% identity (100.0% similar) in 244 aa overlap (1-244:1-244) 10 20 30 40 50 60 pF1KE1 MLLLGAVLLLLALPGHDQETTTQGPGVLLPLPKGACTGWMAGIPGHPGHNGAPGRDGRDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MLLLGAVLLLLALPGHDQETTTQGPGVLLPLPKGACTGWMAGIPGHPGHNGAPGRDGRDG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 TPGEKGEKGDPGLIGPKGDIGETGVPGAEGPRGFPGIQGRKGEPGEGAYVYRSAFSVGLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 TPGEKGEKGDPGLIGPKGDIGETGVPGAEGPRGFPGIQGRKGEPGEGAYVYRSAFSVGLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 TYVTIPNMPIRFTKIFYNQQNHYDGSTGKFHCNIPGLYYFAYHITVYMKDVKVSLFKKDK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 TYVTIPNMPIRFTKIFYNQQNHYDGSTGKFHCNIPGLYYFAYHITVYMKDVKVSLFKKDK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 AMLFTYDQYQENNVDQASGSVLLHLEVGDQVWLQVYGEGERNGLYADNDNDSTFTGFLLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 AMLFTYDQYQENNVDQASGSVLLHLEVGDQVWLQVYGEGERNGLYADNDNDSTFTGFLLY 190 200 210 220 230 240 pF1KE1 HDTN :::: NP_004 HDTN >>NP_001171271 (OMIM: 605441,612556) adiponectin precurs (244 aa) initn: 1705 init1: 1705 opt: 1705 Z-score: 1352.0 bits: 257.6 E(85289): 1.4e-68 Smith-Waterman score: 1705; 100.0% identity (100.0% similar) in 244 aa overlap (1-244:1-244) 10 20 30 40 50 60 pF1KE1 MLLLGAVLLLLALPGHDQETTTQGPGVLLPLPKGACTGWMAGIPGHPGHNGAPGRDGRDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MLLLGAVLLLLALPGHDQETTTQGPGVLLPLPKGACTGWMAGIPGHPGHNGAPGRDGRDG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 TPGEKGEKGDPGLIGPKGDIGETGVPGAEGPRGFPGIQGRKGEPGEGAYVYRSAFSVGLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TPGEKGEKGDPGLIGPKGDIGETGVPGAEGPRGFPGIQGRKGEPGEGAYVYRSAFSVGLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 TYVTIPNMPIRFTKIFYNQQNHYDGSTGKFHCNIPGLYYFAYHITVYMKDVKVSLFKKDK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TYVTIPNMPIRFTKIFYNQQNHYDGSTGKFHCNIPGLYYFAYHITVYMKDVKVSLFKKDK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 AMLFTYDQYQENNVDQASGSVLLHLEVGDQVWLQVYGEGERNGLYADNDNDSTFTGFLLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 AMLFTYDQYQENNVDQASGSVLLHLEVGDQVWLQVYGEGERNGLYADNDNDSTFTGFLLY 190 200 210 220 230 240 pF1KE1 HDTN :::: NP_001 HDTN >>NP_001290066 (OMIM: 614285) complement C1q and tumor n (333 aa) initn: 1184 init1: 259 opt: 642 Z-score: 520.6 bits: 104.2 E(85289): 2.9e-22 Smith-Waterman score: 642; 50.5% identity (70.8% similar) in 202 aa overlap (42-240:131-330) 20 30 40 50 60 70 pF1KE1 ALPGHDQETTTQGPGVLLPLPKGACTGWMAGIPGHPGHNGAPGRDGRDGTPGEKGEKGDP : : : : : : : :: : : : NP_001 GPKGLAGPMGEKGLRGETGPQGQKGNKGDVGPTGPEGPRGNIGPLGPTGLPGPMGPIGKP 110 120 130 140 150 160 80 90 100 110 120 pF1KE1 GLIGPKGDIGETGVPGAEGPRGFPGIQGRKGEPGEGAYVYRSAFSVGLETYVTIP--NMP : : : : : ::..: ::. : .:.::. :: . .:::.::: . .: .:: NP_001 GPKGEAGPTGPQGEPGVRGIRGWKGDRGEKGKIGETLVLPKSAFTVGLTVLSKFPSSDMP 170 180 190 200 210 220 130 140 150 160 170 180 pF1KE1 IRFTKIFYNQQNHYDGSTGKFHCNIPGLYYFAYHITVYMKDVKVSLFKKDKAMLFTYDQY :.: ::.::. :::: ..::: :.: :.:::.:::::. ..:.::: :. .: : : : NP_001 IKFDKILYNEFNHYDTAAGKFTCHIAGVYYFTYHITVFSRNVQVSLVKNGVKILHTKDAY 230 240 250 260 270 280 190 200 210 220 230 240 pF1KE1 QENNVDQASGSVLLHLEVGDQVWLQVYGEGER-NGLYADNDNDSTFTGFLLYHDTN . .. :::::...:.:..::.::::: : ::: :::.::.:.:.:::::::. NP_001 MSSE-DQASGGIVLQLKLGDEVWLQVTG-GERFNGLFADEDDDTTFTGFLLFSSP 290 300 310 320 330 >-- initn: 745 init1: 243 opt: 262 Z-score: 223.9 bits: 49.3 E(85289): 9.8e-06 Smith-Waterman score: 262; 50.0% identity (65.0% similar) in 80 aa overlap (33-106:20-99) 10 20 30 40 50 60 pF1KE1 LLGAVLLLLALPGHDQETTTQGPGVLLPLPKGACTGWMAGIPGHPGHNGAPGRDGRDGTP . .: ::::.::::: ::::::::. NP_001 MRIWWLLLAIEICTGNINSQDTCRQGHPGIPGNPGHNGLPGRDGRDGAK 10 20 30 40 70 80 90 100 110 pF1KE1 GEKGEKGDPGLIG-P--KGDIGETGVPGAEGP---RGFPGIQGRKGEPGEGAYVYRSAFS :.::. :.:: : : : :: : ::.: .:. : :: .: ::. NP_001 GDKGDAGEPGRPGSPGKDGTSGEKGERGADGKVEAKGIKGDQGSRGSPGKHGPKGLAGPM 50 60 70 80 90 100 120 130 140 150 160 170 pF1KE1 VGLETYVTIPNMPIRFTKIFYNQQNHYDGSTGKFHCNIPGLYYFAYHITVYMKDVKVSLF NP_001 GEKGLRGETGPQGQKGNKGDVGPTGPEGPRGNIGPLGPTGLPGPMGPIGKPGPKGEAGPT 110 120 130 140 150 160 >>NP_848635 (OMIM: 614285) complement C1q and tumor necr (333 aa) initn: 1184 init1: 259 opt: 642 Z-score: 520.6 bits: 104.2 E(85289): 2.9e-22 Smith-Waterman score: 642; 50.5% identity (70.8% similar) in 202 aa overlap (42-240:131-330) 20 30 40 50 60 70 pF1KE1 ALPGHDQETTTQGPGVLLPLPKGACTGWMAGIPGHPGHNGAPGRDGRDGTPGEKGEKGDP : : : : : : : :: : : : NP_848 GPKGLAGPMGEKGLRGETGPQGQKGNKGDVGPTGPEGPRGNIGPLGPTGLPGPMGPIGKP 110 120 130 140 150 160 80 90 100 110 120 pF1KE1 GLIGPKGDIGETGVPGAEGPRGFPGIQGRKGEPGEGAYVYRSAFSVGLETYVTIP--NMP : : : : : ::..: ::. : .:.::. :: . .:::.::: . .: .:: NP_848 GPKGEAGPTGPQGEPGVRGIRGWKGDRGEKGKIGETLVLPKSAFTVGLTVLSKFPSSDMP 170 180 190 200 210 220 130 140 150 160 170 180 pF1KE1 IRFTKIFYNQQNHYDGSTGKFHCNIPGLYYFAYHITVYMKDVKVSLFKKDKAMLFTYDQY :.: ::.::. :::: ..::: :.: :.:::.:::::. ..:.::: :. .: : : : NP_848 IKFDKILYNEFNHYDTAAGKFTCHIAGVYYFTYHITVFSRNVQVSLVKNGVKILHTKDAY 230 240 250 260 270 280 190 200 210 220 230 240 pF1KE1 QENNVDQASGSVLLHLEVGDQVWLQVYGEGER-NGLYADNDNDSTFTGFLLYHDTN . .. :::::...:.:..::.::::: : ::: :::.::.:.:.:::::::. NP_848 MSSE-DQASGGIVLQLKLGDEVWLQVTG-GERFNGLFADEDDDTTFTGFLLFSSP 290 300 310 320 330 >-- initn: 745 init1: 243 opt: 262 Z-score: 223.9 bits: 49.3 E(85289): 9.8e-06 Smith-Waterman score: 262; 50.0% identity (65.0% similar) in 80 aa overlap (33-106:20-99) 10 20 30 40 50 60 pF1KE1 LLGAVLLLLALPGHDQETTTQGPGVLLPLPKGACTGWMAGIPGHPGHNGAPGRDGRDGTP . .: ::::.::::: ::::::::. NP_848 MRIWWLLLAIEICTGNINSQDTCRQGHPGIPGNPGHNGLPGRDGRDGAK 10 20 30 40 70 80 90 100 110 pF1KE1 GEKGEKGDPGLIG-P--KGDIGETGVPGAEGP---RGFPGIQGRKGEPGEGAYVYRSAFS :.::. :.:: : : : :: : ::.: .:. : :: .: ::. NP_848 GDKGDAGEPGRPGSPGKDGTSGEKGERGADGKVEAKGIKGDQGSRGSPGKHGPKGLAGPM 50 60 70 80 90 100 120 130 140 150 160 170 pF1KE1 VGLETYVTIPNMPIRFTKIFYNQQNHYDGSTGKFHCNIPGLYYFAYHITVYMKDVKVSLF NP_848 GEKGLRGETGPQGQKGNKGDVGPTGPEGPRGNIGPLGPTGLPGPMGPIGKPGPKGEAGPT 110 120 130 140 150 160 >>NP_001290067 (OMIM: 614285) complement C1q and tumor n (333 aa) initn: 1184 init1: 259 opt: 642 Z-score: 520.6 bits: 104.2 E(85289): 2.9e-22 Smith-Waterman score: 642; 50.5% identity (70.8% similar) in 202 aa overlap (42-240:131-330) 20 30 40 50 60 70 pF1KE1 ALPGHDQETTTQGPGVLLPLPKGACTGWMAGIPGHPGHNGAPGRDGRDGTPGEKGEKGDP : : : : : : : :: : : : NP_001 GPKGLAGPMGEKGLRGETGPQGQKGNKGDVGPTGPEGPRGNIGPLGPTGLPGPMGPIGKP 110 120 130 140 150 160 80 90 100 110 120 pF1KE1 GLIGPKGDIGETGVPGAEGPRGFPGIQGRKGEPGEGAYVYRSAFSVGLETYVTIP--NMP : : : : : ::..: ::. : .:.::. :: . .:::.::: . .: .:: NP_001 GPKGEAGPTGPQGEPGVRGIRGWKGDRGEKGKIGETLVLPKSAFTVGLTVLSKFPSSDMP 170 180 190 200 210 220 130 140 150 160 170 180 pF1KE1 IRFTKIFYNQQNHYDGSTGKFHCNIPGLYYFAYHITVYMKDVKVSLFKKDKAMLFTYDQY :.: ::.::. :::: ..::: :.: :.:::.:::::. ..:.::: :. .: : : : NP_001 IKFDKILYNEFNHYDTAAGKFTCHIAGVYYFTYHITVFSRNVQVSLVKNGVKILHTKDAY 230 240 250 260 270 280 190 200 210 220 230 240 pF1KE1 QENNVDQASGSVLLHLEVGDQVWLQVYGEGER-NGLYADNDNDSTFTGFLLYHDTN . .. :::::...:.:..::.::::: : ::: :::.::.:.:.:::::::. NP_001 MSSE-DQASGGIVLQLKLGDEVWLQVTG-GERFNGLFADEDDDTTFTGFLLFSSP 290 300 310 320 330 >-- initn: 745 init1: 243 opt: 262 Z-score: 223.9 bits: 49.3 E(85289): 9.8e-06 Smith-Waterman score: 262; 50.0% identity (65.0% similar) in 80 aa overlap (33-106:20-99) 10 20 30 40 50 60 pF1KE1 LLGAVLLLLALPGHDQETTTQGPGVLLPLPKGACTGWMAGIPGHPGHNGAPGRDGRDGTP . .: ::::.::::: ::::::::. NP_001 MRIWWLLLAIEICTGNINSQDTCRQGHPGIPGNPGHNGLPGRDGRDGAK 10 20 30 40 70 80 90 100 110 pF1KE1 GEKGEKGDPGLIG-P--KGDIGETGVPGAEGP---RGFPGIQGRKGEPGEGAYVYRSAFS :.::. :.:: : : : :: : ::.: .:. : :: .: ::. NP_001 GDKGDAGEPGRPGSPGKDGTSGEKGERGADGKVEAKGIKGDQGSRGSPGKHGPKGLAGPM 50 60 70 80 90 100 120 130 140 150 160 170 pF1KE1 VGLETYVTIPNMPIRFTKIFYNQQNHYDGSTGKFHCNIPGLYYFAYHITVYMKDVKVSLF NP_001 GEKGLRGETGPQGQKGNKGDVGPTGPEGPRGNIGPLGPTGLPGPMGPIGKPGPKGEAGPT 110 120 130 140 150 160 >>NP_056460 (OMIM: 605670,608752) complement C1q tumor n (243 aa) initn: 405 init1: 224 opt: 537 Z-score: 440.2 bits: 88.9 E(85289): 8.8e-18 Smith-Waterman score: 559; 42.7% identity (61.4% similar) in 246 aa overlap (7-242:6-235) 10 20 30 40 50 60 pF1KE1 MLLLGAVLLLLALPGHDQETTTQGPGVLLPLPKGACTGWMAGIPGHPGHNGAPGRDGRDG :::::.: . . . : : : . : ::: : .: :::::::: NP_056 MRPLLVLLLLGLAAGSPPLDDNKIPSLCPGHPG-----LPGTPGHHGSQGLPGRDGRDG 10 20 30 40 50 70 80 90 100 110 pF1KE1 ------TPGEKGEKGDPGLIGPKGDIGETGVPGAEGPRGFPGIQGRKGEPGEGAYVYRSA .:::::: : ::: ::.:: :: ::: : : : :: . ::: NP_056 RDGAPGAPGEKGEGGRPGLPGPRGD------PG---PRGEAGPAGPTGPAGECSVPPRSA 60 70 80 90 100 120 130 140 150 160 170 pF1KE1 FSVGL-ETYVTIP-NMPIRFTKIFYNQQNHYDGSTGKFHCNIPGLYYFAYHITVYMKDVK ::. :. : : . :. : ... :.:.:::. :::: :..::.:::: : ::: ... NP_056 FSAKRSESRVPPPSDAPLPFDRVLVNEQGHYDAVTGKFTCQVPGVYYFAVHATVYRASLQ 110 120 130 140 150 160 180 190 200 210 220 230 pF1KE1 VSLFKKDKAMLFTYDQYQENNVDQAS--GSVLLHLEVGDQVWLQVYGEGERNGLYADNDN .: :. ... .. :. . :: :.....:: ::::.:: : :. :.::. . NP_056 FDLVKNGESIA-SFFQFFGGWPKPASLSGGAMVRLEPEDQVWVQV-GVGDYIGIYASIKT 170 180 190 200 210 220 240 pF1KE1 DSTFTGFLLYHDTN ::::.:::.: : NP_056 DSTFSGFLVYSDWHSSPVFA 230 240 >>NP_001265360 (OMIM: 605670,608752) complement C1q tumo (243 aa) initn: 405 init1: 224 opt: 537 Z-score: 440.2 bits: 88.9 E(85289): 8.8e-18 Smith-Waterman score: 559; 42.7% identity (61.4% similar) in 246 aa overlap (7-242:6-235) 10 20 30 40 50 60 pF1KE1 MLLLGAVLLLLALPGHDQETTTQGPGVLLPLPKGACTGWMAGIPGHPGHNGAPGRDGRDG :::::.: . . . : : : . : ::: : .: :::::::: NP_001 MRPLLVLLLLGLAAGSPPLDDNKIPSLCPGHPG-----LPGTPGHHGSQGLPGRDGRDG 10 20 30 40 50 70 80 90 100 110 pF1KE1 ------TPGEKGEKGDPGLIGPKGDIGETGVPGAEGPRGFPGIQGRKGEPGEGAYVYRSA .:::::: : ::: ::.:: :: ::: : : : :: . ::: NP_001 RDGAPGAPGEKGEGGRPGLPGPRGD------PG---PRGEAGPAGPTGPAGECSVPPRSA 60 70 80 90 100 120 130 140 150 160 170 pF1KE1 FSVGL-ETYVTIP-NMPIRFTKIFYNQQNHYDGSTGKFHCNIPGLYYFAYHITVYMKDVK ::. :. : : . :. : ... :.:.:::. :::: :..::.:::: : ::: ... NP_001 FSAKRSESRVPPPSDAPLPFDRVLVNEQGHYDAVTGKFTCQVPGVYYFAVHATVYRASLQ 110 120 130 140 150 160 180 190 200 210 220 230 pF1KE1 VSLFKKDKAMLFTYDQYQENNVDQAS--GSVLLHLEVGDQVWLQVYGEGERNGLYADNDN .: :. ... .. :. . :: :.....:: ::::.:: : :. :.::. . NP_001 FDLVKNGESIA-SFFQFFGGWPKPASLSGGAMVRLEPEDQVWVQV-GVGDYIGIYASIKT 170 180 190 200 210 220 240 pF1KE1 DSTFTGFLLYHDTN ::::.:::.: : NP_001 DSTFSGFLVYSDWHSSPVFA 230 240 >>XP_011533735 (OMIM: 120110,156500) PREDICTED: collagen (680 aa) initn: 753 init1: 365 opt: 513 Z-score: 416.2 bits: 85.9 E(85289): 1.9e-16 Smith-Waterman score: 568; 41.8% identity (61.4% similar) in 251 aa overlap (13-239:432-677) 10 20 30 40 pF1KE1 MLLLGAVLLLLALPGHDQETTTQG-PGVLLPLPKGACTGWMA .:::. :. .: ::. : .: : XP_011 NPGLPGPKGDPGVGGPPGLPGPVGPAGAKGMPGHNGEAGPRGAPGI--PGTRGP-IG-PP 410 420 430 440 450 50 60 70 80 90 pF1KE1 GIPGHPGHNGAPGRDGRDG-----TPGEKGEKGDPGLIGPKGDIGETGVPGAEGPRGFPG :::: :: .: :: : : : : .: : :: ::.: :: :.:: :: : :: XP_011 GIPGFPGSKGDPGSPGPPGPAGIATKGLNGPTGPPGPPGPRGHSGEPGLPGPPGPPGPPG 460 470 480 490 500 510 100 110 120 130 pF1KE1 --------IQ-GRK----GEP----GEGAY-VYRSAFSVGLETYVTIPNMPIRFTKIFYN :. :.. : : ..:. . :::.: : . :: : ::.:: XP_011 QAVMPEGFIKAGQRPSLSGTPLVSANQGVTGMPVSAFTVILSKAYPAIGTPIPFDKILYN 520 530 540 550 560 570 140 150 160 170 180 190 pF1KE1 QQNHYDGSTGKFHCNIPGLYYFAYHITVYMKDVKVSLFKKDKAMLFTYDQYQENNVDQAS .:.::: :: : :.:::.:::.::. : : :.:.:. ...:::.: .. .:::: XP_011 RQQHYDPRTGIFTCQIPGIYYFSYHVHVKGTHVWVGLYKNGTPVMYTYDEYTKGYLDQAS 580 590 600 610 620 630 200 210 220 230 240 pF1KE1 GSVLLHLEVGDQVWLQVYGEGERNGLYADNDNDSTFTGFLLYHDTN ::... : .::::::. ..: ::::... :.:.:::. XP_011 GSAIIDLTENDQVWLQL-PNAESNGLYSSEYVHSSFSGFLVAPM 640 650 660 670 680 >-- initn: 595 init1: 233 opt: 235 Z-score: 199.2 bits: 45.8 E(85289): 0.00023 Smith-Waterman score: 247; 48.4% identity (57.0% similar) in 93 aa overlap (14-99:340-431) 10 20 30 40 pF1KE1 MLLLGAVLLLLALPGHDQETTTQG-PGVL-LPLPKGACTGWM- ::. .: :: :: ::: :: XP_011 RGPAGLPGGPGAKGEQGPAGLPGKPGLTGPPGNMGPQGPKGIPGSHGLPGPKGE-TGPAG 310 320 330 340 350 360 50 60 70 80 90 pF1KE1 -AGIPGHPGHNGAPGRDGRDGTPGEKG---EKGDPGLIGPKGDIGETGVPGAEGPRGFPG :: :: :. :.:: ::. : ::. : ::.::: ::::: : : :: :: : : XP_011 PAGYPGAKGERGSPGSDGKPGYPGKPGLDGPKGNPGLPGPKGDPGVGGPPGLPGPVGPAG 370 380 390 400 410 420 100 110 120 130 140 150 pF1KE1 IQGRKGEPGEGAYVYRSAFSVGLETYVTIPNMPIRFTKIFYNQQNHYDGSTGKFHCNIPG .: XP_011 AKGMPGHNGEAGPRGAPGIPGTRGPIGPPGIPGFPGSKGDPGSPGPPGPAGIATKGLNGP 430 440 450 460 470 480 >>NP_000484 (OMIM: 120110,156500) collagen alpha-1(X) ch (680 aa) initn: 753 init1: 365 opt: 513 Z-score: 416.2 bits: 85.9 E(85289): 1.9e-16 Smith-Waterman score: 568; 41.8% identity (61.4% similar) in 251 aa overlap (13-239:432-677) 10 20 30 40 pF1KE1 MLLLGAVLLLLALPGHDQETTTQG-PGVLLPLPKGACTGWMA .:::. :. .: ::. : .: : NP_000 NPGLPGPKGDPGVGGPPGLPGPVGPAGAKGMPGHNGEAGPRGAPGI--PGTRGP-IG-PP 410 420 430 440 450 50 60 70 80 90 pF1KE1 GIPGHPGHNGAPGRDGRDG-----TPGEKGEKGDPGLIGPKGDIGETGVPGAEGPRGFPG :::: :: .: :: : : : : .: : :: ::.: :: :.:: :: : :: NP_000 GIPGFPGSKGDPGSPGPPGPAGIATKGLNGPTGPPGPPGPRGHSGEPGLPGPPGPPGPPG 460 470 480 490 500 510 100 110 120 130 pF1KE1 --------IQ-GRK----GEP----GEGAY-VYRSAFSVGLETYVTIPNMPIRFTKIFYN :. :.. : : ..:. . :::.: : . :: : ::.:: NP_000 QAVMPEGFIKAGQRPSLSGTPLVSANQGVTGMPVSAFTVILSKAYPAIGTPIPFDKILYN 520 530 540 550 560 570 140 150 160 170 180 190 pF1KE1 QQNHYDGSTGKFHCNIPGLYYFAYHITVYMKDVKVSLFKKDKAMLFTYDQYQENNVDQAS .:.::: :: : :.:::.:::.::. : : :.:.:. ...:::.: .. .:::: NP_000 RQQHYDPRTGIFTCQIPGIYYFSYHVHVKGTHVWVGLYKNGTPVMYTYDEYTKGYLDQAS 580 590 600 610 620 630 200 210 220 230 240 pF1KE1 GSVLLHLEVGDQVWLQVYGEGERNGLYADNDNDSTFTGFLLYHDTN ::... : .::::::. ..: ::::... :.:.:::. NP_000 GSAIIDLTENDQVWLQL-PNAESNGLYSSEYVHSSFSGFLVAPM 640 650 660 670 680 >-- initn: 595 init1: 233 opt: 235 Z-score: 199.2 bits: 45.8 E(85289): 0.00023 Smith-Waterman score: 247; 48.4% identity (57.0% similar) in 93 aa overlap (14-99:340-431) 10 20 30 40 pF1KE1 MLLLGAVLLLLALPGHDQETTTQG-PGVL-LPLPKGACTGWM- ::. .: :: :: ::: :: NP_000 RGPAGLPGGPGAKGEQGPAGLPGKPGLTGPPGNMGPQGPKGIPGSHGLPGPKGE-TGPAG 310 320 330 340 350 360 50 60 70 80 90 pF1KE1 -AGIPGHPGHNGAPGRDGRDGTPGEKG---EKGDPGLIGPKGDIGETGVPGAEGPRGFPG :: :: :. :.:: ::. : ::. : ::.::: ::::: : : :: :: : : NP_000 PAGYPGAKGERGSPGSDGKPGYPGKPGLDGPKGNPGLPGPKGDPGVGGPPGLPGPVGPAG 370 380 390 400 410 420 100 110 120 130 140 150 pF1KE1 IQGRKGEPGEGAYVYRSAFSVGLETYVTIPNMPIRFTKIFYNQQNHYDGSTGKFHCNIPG .: NP_000 AKGMPGHNGEAGPRGAPGIPGTRGPIGPPGIPGFPGSKGDPGSPGPPGPAGIATKGLNGP 430 440 450 460 470 480 >>XP_011533734 (OMIM: 120110,156500) PREDICTED: collagen (680 aa) initn: 753 init1: 365 opt: 513 Z-score: 416.2 bits: 85.9 E(85289): 1.9e-16 Smith-Waterman score: 568; 41.8% identity (61.4% similar) in 251 aa overlap (13-239:432-677) 10 20 30 40 pF1KE1 MLLLGAVLLLLALPGHDQETTTQG-PGVLLPLPKGACTGWMA .:::. :. .: ::. : .: : XP_011 NPGLPGPKGDPGVGGPPGLPGPVGPAGAKGMPGHNGEAGPRGAPGI--PGTRGP-IG-PP 410 420 430 440 450 50 60 70 80 90 pF1KE1 GIPGHPGHNGAPGRDGRDG-----TPGEKGEKGDPGLIGPKGDIGETGVPGAEGPRGFPG :::: :: .: :: : : : : .: : :: ::.: :: :.:: :: : :: XP_011 GIPGFPGSKGDPGSPGPPGPAGIATKGLNGPTGPPGPPGPRGHSGEPGLPGPPGPPGPPG 460 470 480 490 500 510 100 110 120 130 pF1KE1 --------IQ-GRK----GEP----GEGAY-VYRSAFSVGLETYVTIPNMPIRFTKIFYN :. :.. : : ..:. . :::.: : . :: : ::.:: XP_011 QAVMPEGFIKAGQRPSLSGTPLVSANQGVTGMPVSAFTVILSKAYPAIGTPIPFDKILYN 520 530 540 550 560 570 140 150 160 170 180 190 pF1KE1 QQNHYDGSTGKFHCNIPGLYYFAYHITVYMKDVKVSLFKKDKAMLFTYDQYQENNVDQAS .:.::: :: : :.:::.:::.::. : : :.:.:. ...:::.: .. .:::: XP_011 RQQHYDPRTGIFTCQIPGIYYFSYHVHVKGTHVWVGLYKNGTPVMYTYDEYTKGYLDQAS 580 590 600 610 620 630 200 210 220 230 240 pF1KE1 GSVLLHLEVGDQVWLQVYGEGERNGLYADNDNDSTFTGFLLYHDTN ::... : .::::::. ..: ::::... :.:.:::. XP_011 GSAIIDLTENDQVWLQL-PNAESNGLYSSEYVHSSFSGFLVAPM 640 650 660 670 680 >-- initn: 595 init1: 233 opt: 235 Z-score: 199.2 bits: 45.8 E(85289): 0.00023 Smith-Waterman score: 247; 48.4% identity (57.0% similar) in 93 aa overlap (14-99:340-431) 10 20 30 40 pF1KE1 MLLLGAVLLLLALPGHDQETTTQG-PGVL-LPLPKGACTGWM- ::. .: :: :: ::: :: XP_011 RGPAGLPGGPGAKGEQGPAGLPGKPGLTGPPGNMGPQGPKGIPGSHGLPGPKGE-TGPAG 310 320 330 340 350 360 50 60 70 80 90 pF1KE1 -AGIPGHPGHNGAPGRDGRDGTPGEKG---EKGDPGLIGPKGDIGETGVPGAEGPRGFPG :: :: :. :.:: ::. : ::. : ::.::: ::::: : : :: :: : : XP_011 PAGYPGAKGERGSPGSDGKPGYPGKPGLDGPKGNPGLPGPKGDPGVGGPPGLPGPVGPAG 370 380 390 400 410 420 100 110 120 130 140 150 pF1KE1 IQGRKGEPGEGAYVYRSAFSVGLETYVTIPNMPIRFTKIFYNQQNHYDGSTGKFHCNIPG .: XP_011 AKGMPGHNGEAGPRGAPGIPGTRGPIGPPGIPGFPGSKGDPGSPGPPGPAGIATKGLNGP 430 440 450 460 470 480 244 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 17:36:46 2016 done: Sun Nov 6 17:36:47 2016 Total Scan time: 6.010 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]