FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3142, 353 aa 1>>>pF1KE3142 353 - 353 aa - 353 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.7013+/-0.000837; mu= -3.0389+/- 0.051 mean_var=237.0780+/-47.547, 0's: 0 Z-trim(115.0): 12 B-trim: 0 in 0/53 Lambda= 0.083297 statistics sampled from 15518 (15522) to 15518 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.791), E-opt: 0.2 (0.477), width: 16 Scan time: 3.440 The best scores are: opt bits E(32554) CCDS3265.1 THPO gene_id:7066|Hs108|chr3 ( 353) 2335 293.0 2.6e-79 CCDS54693.1 THPO gene_id:7066|Hs108|chr3 ( 349) 2285 286.9 1.7e-77 CCDS77867.1 THPO gene_id:7066|Hs108|chr3 ( 286) 1035 136.7 2.4e-32 >>CCDS3265.1 THPO gene_id:7066|Hs108|chr3 (353 aa) initn: 2335 init1: 2335 opt: 2335 Z-score: 1537.3 bits: 293.0 E(32554): 2.6e-79 Smith-Waterman score: 2335; 100.0% identity (100.0% similar) in 353 aa overlap (1-353:1-353) 10 20 30 40 50 60 pF1KE3 MELTELLLVVMLLLTARLTLSSPAPPACDLRVLSKLLRDSHVLHSRLSQCPEVHPLPTPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 MELTELLLVVMLLLTARLTLSSPAPPACDLRVLSKLLRDSHVLHSRLSQCPEVHPLPTPV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LLPAVDFSLGEWKTQMEETKAQDILGAVTLLLEGVMAARGQLGPTCLSSLLGQLSGQVRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 LLPAVDFSLGEWKTQMEETKAQDILGAVTLLLEGVMAARGQLGPTCLSSLLGQLSGQVRL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 LLGALQSLLGTQLPPQGRTTAHKDPNAIFLSFQHLLRGKVRFLMLVGGSTLCVRRAPPTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 LLGALQSLLGTQLPPQGRTTAHKDPNAIFLSFQHLLRGKVRFLMLVGGSTLCVRRAPPTT 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 AVPSRTSLVLTLNELPNRTSGLLETNFTASARTTGSGLLKWQQGFRAKIPGLLNQTSRSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 AVPSRTSLVLTLNELPNRTSGLLETNFTASARTTGSGLLKWQQGFRAKIPGLLNQTSRSL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 DQIPGYLNRIHELLNGTRGLFPGPSRRTLGAPDISSGTSDTGSLPPNLQPGYSPSPTHPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 DQIPGYLNRIHELLNGTRGLFPGPSRRTLGAPDISSGTSDTGSLPPNLQPGYSPSPTHPP 250 260 270 280 290 300 310 320 330 340 350 pF1KE3 TGQYTLFPLPPTLPTPVVQLHPLLPDPSAPTPTPTSPLLNTSYTHSQNLSQEG ::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 TGQYTLFPLPPTLPTPVVQLHPLLPDPSAPTPTPTSPLLNTSYTHSQNLSQEG 310 320 330 340 350 >>CCDS54693.1 THPO gene_id:7066|Hs108|chr3 (349 aa) initn: 1486 init1: 1486 opt: 2285 Z-score: 1504.9 bits: 286.9 E(32554): 1.7e-77 Smith-Waterman score: 2285; 98.9% identity (98.9% similar) in 353 aa overlap (1-353:1-349) 10 20 30 40 50 60 pF1KE3 MELTELLLVVMLLLTARLTLSSPAPPACDLRVLSKLLRDSHVLHSRLSQCPEVHPLPTPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 MELTELLLVVMLLLTARLTLSSPAPPACDLRVLSKLLRDSHVLHSRLSQCPEVHPLPTPV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LLPAVDFSLGEWKTQMEETKAQDILGAVTLLLEGVMAARGQLGPTCLSSLLGQLSGQVRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 LLPAVDFSLGEWKTQMEETKAQDILGAVTLLLEGVMAARGQLGPTCLSSLLGQLSGQVRL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 LLGALQSLLGTQLPPQGRTTAHKDPNAIFLSFQHLLRGKVRFLMLVGGSTLCVRRAPPTT :::::::::::: :::::::::::::::::::::::::::::::::::::::::::: CCDS54 LLGALQSLLGTQ----GRTTAHKDPNAIFLSFQHLLRGKVRFLMLVGGSTLCVRRAPPTT 130 140 150 160 170 190 200 210 220 230 240 pF1KE3 AVPSRTSLVLTLNELPNRTSGLLETNFTASARTTGSGLLKWQQGFRAKIPGLLNQTSRSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 AVPSRTSLVLTLNELPNRTSGLLETNFTASARTTGSGLLKWQQGFRAKIPGLLNQTSRSL 180 190 200 210 220 230 250 260 270 280 290 300 pF1KE3 DQIPGYLNRIHELLNGTRGLFPGPSRRTLGAPDISSGTSDTGSLPPNLQPGYSPSPTHPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 DQIPGYLNRIHELLNGTRGLFPGPSRRTLGAPDISSGTSDTGSLPPNLQPGYSPSPTHPP 240 250 260 270 280 290 310 320 330 340 350 pF1KE3 TGQYTLFPLPPTLPTPVVQLHPLLPDPSAPTPTPTSPLLNTSYTHSQNLSQEG ::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 TGQYTLFPLPPTLPTPVVQLHPLLPDPSAPTPTPTSPLLNTSYTHSQNLSQEG 300 310 320 330 340 >>CCDS77867.1 THPO gene_id:7066|Hs108|chr3 (286 aa) initn: 1070 init1: 1029 opt: 1035 Z-score: 694.3 bits: 136.7 E(32554): 2.4e-32 Smith-Waterman score: 1037; 62.3% identity (74.7% similar) in 308 aa overlap (1-300:1-284) 10 20 30 40 50 60 pF1KE3 MELTELLLVVMLLLTARLTLSSPAPPACDLRVLSKLLRDSHVLHSRLSQCPEVHPLPTPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 MELTELLLVVMLLLTARLTLSSPAPPACDLRVLSKLLRDSHVLHSRLSQCPEVHPLPTPV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LLPAVDFSLGEWKTQMEETKAQDILGAVTLLLEGVMAARGQLGPTCLSSLLGQLSGQVRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 LLPAVDFSLGEWKTQMEETKAQDILGAVTLLLEGVMAARGQLGPTCLSSLLGQLSGQVRL 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 LLGALQSLLGTQLPPQGRTTAHKDPNAIFLSFQHLLRGKVRFLMLVGGSTLCVRR----- ::::::::::::::::::::::::::::::::::::::: . .:: . :. . CCDS77 LLGALQSLLGTQLPPQGRTTAHKDPNAIFLSFQHLLRGKD--FWIVGDKLHCLSQNYWLW 130 140 150 160 170 180 190 200 210 220 230 pF1KE3 APPTTA-VPSRTSLVLTLN-ELPNRTSGLLETNFTASARTTGSGLLKWQQGFRAKIPGLL : ..: . :. : : ..:. . . : . .:: :.:.. . : CCDS77 ASEVAAGIQSQDSWSAEPNLQVPGPNPRIPEQD----TRT-----LEWNSW---TLSWTL 180 190 200 210 220 240 250 260 270 280 290 pF1KE3 NQTSRSLDQIPG-YLNRIHELLNGTRGLFPGPSRRTLGAPDISSGTSDTGSLPPNLQPGY .: :: :: .: :.. : .:. : .. :. :: . . .:: . . .. CCDS77 TQDPRS----PGHFLRNIRHRLPATQ-----PPAWIFSFPNPSSYWT-VYALPSSTHLAH 230 240 250 260 270 300 310 320 330 340 350 pF1KE3 SPSPTHPPTGQYTLFPLPPTLPTPVVQLHPLLPDPSAPTPTPTSPLLNTSYTHSQNLSQE .:. :: CCDS77 PCGPAPPPAS 280 353 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 04:51:10 2016 done: Sun Nov 6 04:51:10 2016 Total Scan time: 3.440 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]