Result of FASTA (omim) for pFN21AE2272
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2272, 213 aa
  1>>>pF1KE2272 213 - 213 aa - 213 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2933+/-0.000404; mu= 12.1669+/- 0.025
 mean_var=138.8450+/-27.496, 0's: 0 Z-trim(115.0): 51  B-trim: 572 in 1/58
 Lambda= 0.108845
 statistics sampled from 25184 (25226) to 25184 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.652), E-opt: 0.2 (0.296), width:  16
 Scan time:  6.370

The best scores are:                                      opt bits E(85289)
NP_054762 (OMIM: 600795,609512,614696) charged mul ( 213) 1310 216.6 2.5e-56
XP_011531878 (OMIM: 600795,609512,614696) PREDICTE ( 229) 1252 207.5 1.4e-53
NP_001231573 (OMIM: 600795,609512,614696) charged  ( 172) 1056 176.6 2.2e-44
NP_940818 (OMIM: 610893) charged multivesicular bo ( 222)  427 77.9 1.4e-14
NP_055268 (OMIM: 610893) charged multivesicular bo ( 222)  427 77.9 1.4e-14
XP_005258804 (OMIM: 610893) PREDICTED: charged mul ( 265)  395 73.0 5.2e-13
XP_005258803 (OMIM: 610893) PREDICTED: charged mul ( 265)  395 73.0 5.2e-13
NP_057163 (OMIM: 610052) charged multivesicular bo ( 222)  311 59.7 4.3e-09
NP_001005753 (OMIM: 610052) charged multivesicular ( 156)  203 42.6 0.00043
NP_065145 (OMIM: 606486) charged multivesicular bo ( 199)  195 41.4  0.0012
NP_002759 (OMIM: 164010,614961) charged multivesic ( 196)  179 38.9  0.0068


>>NP_054762 (OMIM: 600795,609512,614696) charged multive  (213 aa)
 initn: 1310 init1: 1310 opt: 1310  Z-score: 1132.3  bits: 216.6 E(85289): 2.5e-56
Smith-Waterman score: 1310; 100.0% identity (100.0% similar) in 213 aa overlap (1-213:1-213)

               10        20        30        40        50        60
pF1KE2 MASLFKKKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 MASLFKKKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACKV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 LAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 LAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 TLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 TLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAK
              130       140       150       160       170       180

              190       200       210   
pF1KE2 APSAARSLPSASTSKATISDEEIERQLKALGVD
       :::::::::::::::::::::::::::::::::
NP_054 APSAARSLPSASTSKATISDEEIERQLKALGVD
              190       200       210   

>>XP_011531878 (OMIM: 600795,609512,614696) PREDICTED: c  (229 aa)
 initn: 1247 init1: 1247 opt: 1252  Z-score: 1082.7  bits: 207.5 E(85289): 1.4e-53
Smith-Waterman score: 1252; 96.2% identity (97.6% similar) in 211 aa overlap (3-213:19-229)

                               10        20        30        40    
pF1KE2                 MASLFKKKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLEL
                         : ..   . :::::::::::::::::::::::::::::::::
XP_011 MISAQRNHHLPDSSDSSTSAYRVARITDVIKEQNRELRGTQRAIIRDRAALEKQEKQLEL
               10        20        30        40        50        60

           50        60        70        80        90       100    
pF1KE2 EIKKMAKIGNKEACKVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EIKKMAKIGNKEACKVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMST
               70        80        90       100       110       120

          110       120       130       140       150       160    
pF1KE2 TAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVN
              130       140       150       160       170       180

          170       180       190       200       210   
pF1KE2 QVLDEIGIEISGKMAKAPSAARSLPSASTSKATISDEEIERQLKALGVD
       :::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QVLDEIGIEISGKMAKAPSAARSLPSASTSKATISDEEIERQLKALGVD
              190       200       210       220         

>>NP_001231573 (OMIM: 600795,609512,614696) charged mult  (172 aa)
 initn: 1056 init1: 1056 opt: 1056  Z-score: 917.9  bits: 176.6 E(85289): 2.2e-44
Smith-Waterman score: 1056; 99.4% identity (100.0% similar) in 172 aa overlap (42-213:1-172)

              20        30        40        50        60        70 
pF1KE2 DVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACKVLAKQLVHLRKQ
                                     .:::::::::::::::::::::::::::::
NP_001                               MELEIKKMAKIGNKEACKVLAKQLVHLRKQ
                                             10        20        30

              80        90       100       110       120       130 
pF1KE2 KTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKE
               40        50        60        70        80        90

             140       150       160       170       180       190 
pF1KE2 NMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKAPSAARSLPSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKAPSAARSLPSA
              100       110       120       130       140       150

             200       210   
pF1KE2 STSKATISDEEIERQLKALGVD
       ::::::::::::::::::::::
NP_001 STSKATISDEEIERQLKALGVD
              160       170  

>>NP_940818 (OMIM: 610893) charged multivesicular body p  (222 aa)
 initn: 482 init1: 365 opt: 427  Z-score: 382.7  bits: 77.9 E(85289): 1.4e-14
Smith-Waterman score: 427; 33.3% identity (69.8% similar) in 222 aa overlap (1-213:1-222)

                10        20        30        40        50         
pF1KE2 MASLF-KKKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACK
       :  :: ..:: ........: :  ..: . :.:  :: :::..  .:::::: :. .: .
NP_940 MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVR
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KE2 VLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQ
       ..::.::. :.   .   . ... ..: . ....:. .:: ::. ..:.: ..:...   
NP_940 IMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLP
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KE2 KTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMA
       .  . :..:...   :.: :::.::..:: .   .:::::. .:.:::::.:. .. ...
NP_940 QIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELS
              130       140       150       160       170       180

     180       190               200       210   
pF1KE2 KAPSAARSLPSASTSK---ATIS-----DEEIERQLKALGVD
       . ::.. ::  :. .:   :. :     : ..:..:: :  :
NP_940 NLPSTGGSLSVAAGGKKAEAAASALADADADLEERLKNLRRD
              190       200       210       220  

>>NP_055268 (OMIM: 610893) charged multivesicular body p  (222 aa)
 initn: 482 init1: 365 opt: 427  Z-score: 382.7  bits: 77.9 E(85289): 1.4e-14
Smith-Waterman score: 427; 33.3% identity (69.8% similar) in 222 aa overlap (1-213:1-222)

                10        20        30        40        50         
pF1KE2 MASLF-KKKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACK
       :  :: ..:: ........: :  ..: . :.:  :: :::..  .:::::: :. .: .
NP_055 MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVR
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KE2 VLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQ
       ..::.::. :.   .   . ... ..: . ....:. .:: ::. ..:.: ..:...   
NP_055 IMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLP
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KE2 KTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMA
       .  . :..:...   :.: :::.::..:: .   .:::::. .:.:::::.:. .. ...
NP_055 QIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELS
              130       140       150       160       170       180

     180       190               200       210   
pF1KE2 KAPSAARSLPSASTSK---ATIS-----DEEIERQLKALGVD
       . ::.. ::  :. .:   :. :     : ..:..:: :  :
NP_055 NLPSTGGSLSVAAGGKKAEAAASALADADADLEERLKNLRRD
              190       200       210       220  

>>XP_005258804 (OMIM: 610893) PREDICTED: charged multive  (265 aa)
 initn: 455 init1: 338 opt: 395  Z-score: 354.6  bits: 73.0 E(85289): 5.2e-13
Smith-Waterman score: 395; 32.3% identity (70.7% similar) in 198 aa overlap (1-197:1-197)

                10        20        30        40        50         
pF1KE2 MASLF-KKKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACK
       :  :: ..:: ........: :  ..: . :.:  :: :::..  .:::::: :. .: .
XP_005 MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVR
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KE2 VLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQ
       ..::.::. :.   .   . ... ..: . ....:. .:: ::. ..:.: ..:...   
XP_005 IMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLP
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KE2 KTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMA
       .  . :..:...   :.: :::.::..:: .   .:::::. .:.:::::.:. .. ...
XP_005 QIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELS
              130       140       150       160       170       180

     180       190       200       210                             
pF1KE2 KAPSAARSLPSASTSKATISDEEIERQLKALGVD                          
       .  : . . :  . . ::                                          
XP_005 SECSKSWT-PFPTQGPATAPSPPFPCITPLRCLTPPAQTPTFSADLPSTGGSLSVAAGGK
               190       200       210       220       230         

>>XP_005258803 (OMIM: 610893) PREDICTED: charged multive  (265 aa)
 initn: 455 init1: 338 opt: 395  Z-score: 354.6  bits: 73.0 E(85289): 5.2e-13
Smith-Waterman score: 395; 32.3% identity (70.7% similar) in 198 aa overlap (1-197:1-197)

                10        20        30        40        50         
pF1KE2 MASLF-KKKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACK
       :  :: ..:: ........: :  ..: . :.:  :: :::..  .:::::: :. .: .
XP_005 MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVR
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KE2 VLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQ
       ..::.::. :.   .   . ... ..: . ....:. .:: ::. ..:.: ..:...   
XP_005 IMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLP
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KE2 KTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMA
       .  . :..:...   :.: :::.::..:: .   .:::::. .:.:::::.:. .. ...
XP_005 QIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELS
              130       140       150       160       170       180

     180       190       200       210                             
pF1KE2 KAPSAARSLPSASTSKATISDEEIERQLKALGVD                          
       .  : . . :  . . ::                                          
XP_005 SECSKSWT-PFPTQGPATAPSPPFPCITPLRCLTPPAQTPTFSADLPSTGGSLSVAAGGK
               190       200       210       220       230         

>>NP_057163 (OMIM: 610052) charged multivesicular body p  (222 aa)
 initn: 332 init1: 241 opt: 311  Z-score: 284.3  bits: 59.7 E(85289): 4.3e-09
Smith-Waterman score: 311; 27.5% identity (68.6% similar) in 207 aa overlap (6-210:8-210)

                 10        20        30        40        50        
pF1KE2   MASLFKKKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEAC
              ..:   ....: . ..:  .:.. :.   ....:....  .:  :: :.:..:
NP_057 MGLFGKTQEKPPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVC
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KE2 KVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDP
        ::::.... ::  .. .: .....:.    : . . ...::... ....:.:... .  
NP_057 IVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKI
               70        80        90       100       110       120

      120       130       140       150       160       170        
pF1KE2 QKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEIS-GK
        .   ::....:: ::  . :::..::    :.. ::.:: .. ... .:.: .::. : 
NP_057 PEIQATMRELSKEMMKAGIIEEMLEDT----FESMDDQEEMEEEAEMEIDRILFEITAGA
              130       140           150       160       170      

       180        190       200       210            
pF1KE2 MAKAPSAAR-SLPSASTSKATISDEEIERQLKALGVD         
       ..:::: .  .::      :  ..:. :.. .::            
NP_057 LGKAPSKVTDALPEPEPPGAMAASEDEEEEEEALEAMQSRLATLRS
        180       190       200       210       220  

>>NP_001005753 (OMIM: 610052) charged multivesicular bod  (156 aa)
 initn: 229 init1: 155 opt: 203  Z-score: 194.5  bits: 42.6 E(85289): 0.00043
Smith-Waterman score: 203; 27.7% identity (67.6% similar) in 148 aa overlap (65-210:1-144)

           40        50        60        70        80        90    
pF1KE2 LEKQEKQLELEIKKMAKIGNKEACKVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNS
                                     ... ::  .. .: .....:.    : . .
NP_001                               MIRSRKAVSKLYASKAHMNSVLMGMKNQLA
                                             10        20        30

          100       110       120       130       140       150    
pF1KE2 QMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSD
        ...::... ....:.:... .   .   ::....:: ::  . :::..::    :.. :
NP_001 VLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDT----FESMD
               40        50        60        70        80          

          160       170        180        190       200       210  
pF1KE2 DEEESQDIVNQVLDEIGIEIS-GKMAKAPSAAR-SLPSASTSKATISDEEIERQLKALGV
       :.:: .. ... .:.: .::. : ..:::: .  .::      :  ..:. :.. .::  
NP_001 DQEEMEEEAEMEIDRILFEITAGALGKAPSKVTDALPEPEPPGAMAASEDEEEEEEALEA
         90       100       110       120       130       140      

                 
pF1KE2 D         
                 
NP_001 MQSRLATLRS
        150      

>>NP_065145 (OMIM: 606486) charged multivesicular body p  (199 aa)
 initn: 131 init1:  64 opt: 195  Z-score: 186.4  bits: 41.4 E(85289): 0.0012
Smith-Waterman score: 201; 19.5% identity (65.8% similar) in 190 aa overlap (21-210:11-195)

               10        20        30        40        50        60
pF1KE2 MASLFKKKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACKV
                           :. . . . :.    .:.::  . .:::  . :: :. ..
NP_065           MSNMEKHLFNLKFAAKELSRSAKKCDKEEKAEKAKIKKAIQKGNMEVARI
                         10        20        30        40        50

               70        80        90       100       110       120
pF1KE2 LAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQK
        :.. .. ..: .  . .:..: ........  .. :.. .:. ..:.:.:. : :. .:
NP_065 HAENAIRQKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEK
               60        70        80        90       100       110

              130       140       150       160       170       180
pF1KE2 TLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAK
           :..:...   ...  ....::...    .  ... . ..... :: :.... .. .
NP_065 ISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQ
              120       130       140       150       160       170

              190       200       210    
pF1KE2 APSAARSLPSASTSKATISDEEIERQLKALGVD 
       . ..     :..:: :.  ..:. ..:  :    
NP_065 GQTG-----SVGTSVASAEQDELSQRLARLRDQV
                   180       190         




213 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 17:44:20 2016 done: Sun Nov  6 17:44:21 2016
 Total Scan time:  6.370 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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