FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2272, 213 aa 1>>>pF1KE2272 213 - 213 aa - 213 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.7395+/-0.00104; mu= 9.0872+/- 0.063 mean_var=124.9574+/-24.401, 0's: 0 Z-trim(107.6): 26 B-trim: 0 in 0/53 Lambda= 0.114734 statistics sampled from 9654 (9673) to 9654 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.656), E-opt: 0.2 (0.297), width: 16 Scan time: 2.120 The best scores are: opt bits E(32554) CCDS2918.1 CHMP2B gene_id:25978|Hs108|chr3 ( 213) 1310 227.4 5.2e-60 CCDS58840.1 CHMP2B gene_id:25978|Hs108|chr3 ( 172) 1056 185.3 2e-47 CCDS12986.1 CHMP2A gene_id:27243|Hs108|chr19 ( 222) 427 81.3 5.3e-16 >>CCDS2918.1 CHMP2B gene_id:25978|Hs108|chr3 (213 aa) initn: 1310 init1: 1310 opt: 1310 Z-score: 1190.9 bits: 227.4 E(32554): 5.2e-60 Smith-Waterman score: 1310; 100.0% identity (100.0% similar) in 213 aa overlap (1-213:1-213) 10 20 30 40 50 60 pF1KE2 MASLFKKKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS29 MASLFKKKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACKV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 LAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS29 LAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 TLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS29 TLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAK 130 140 150 160 170 180 190 200 210 pF1KE2 APSAARSLPSASTSKATISDEEIERQLKALGVD ::::::::::::::::::::::::::::::::: CCDS29 APSAARSLPSASTSKATISDEEIERQLKALGVD 190 200 210 >>CCDS58840.1 CHMP2B gene_id:25978|Hs108|chr3 (172 aa) initn: 1056 init1: 1056 opt: 1056 Z-score: 965.0 bits: 185.3 E(32554): 2e-47 Smith-Waterman score: 1056; 99.4% identity (100.0% similar) in 172 aa overlap (42-213:1-172) 20 30 40 50 60 70 pF1KE2 DVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACKVLAKQLVHLRKQ .::::::::::::::::::::::::::::: CCDS58 MELEIKKMAKIGNKEACKVLAKQLVHLRKQ 10 20 30 80 90 100 110 120 130 pF1KE2 KTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 KTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKE 40 50 60 70 80 90 140 150 160 170 180 190 pF1KE2 NMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKAPSAARSLPSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 NMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKAPSAARSLPSA 100 110 120 130 140 150 200 210 pF1KE2 STSKATISDEEIERQLKALGVD :::::::::::::::::::::: CCDS58 STSKATISDEEIERQLKALGVD 160 170 >>CCDS12986.1 CHMP2A gene_id:27243|Hs108|chr19 (222 aa) initn: 482 init1: 365 opt: 427 Z-score: 400.7 bits: 81.3 E(32554): 5.3e-16 Smith-Waterman score: 427; 33.3% identity (69.8% similar) in 222 aa overlap (1-213:1-222) 10 20 30 40 50 pF1KE2 MASLF-KKKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACK : :: ..:: ........: : ..: . :.: :: :::.. .:::::: :. .: . CCDS12 MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVR 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE2 VLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQ ..::.::. :. . . ... ..: . ....:. .:: ::. ..:.: ..:... CCDS12 IMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLP 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE2 KTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMA . . :..:... :.: :::.::..:: . .:::::. .:.:::::.:. .. ... CCDS12 QIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELS 130 140 150 160 170 180 180 190 200 210 pF1KE2 KAPSAARSLPSASTSK---ATIS-----DEEIERQLKALGVD . ::.. :: :. .: :. : : ..:..:: : : CCDS12 NLPSTGGSLSVAAGGKKAEAAASALADADADLEERLKNLRRD 190 200 210 220 213 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 17:44:19 2016 done: Sun Nov 6 17:44:19 2016 Total Scan time: 2.120 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]