FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3028, 151 aa 1>>>pF1KE3028 151 - 151 aa - 151 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.5377+/-0.000376; mu= 16.3179+/- 0.023 mean_var=65.3156+/-13.272, 0's: 0 Z-trim(112.7): 12 B-trim: 0 in 0/49 Lambda= 0.158696 statistics sampled from 21652 (21661) to 21652 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.634), E-opt: 0.2 (0.254), width: 16 Scan time: 4.420 The best scores are: opt bits E(85289) NP_001225 (OMIM: 123320,192600,601253,606072,60780 ( 151) 1037 245.8 2e-65 NP_203123 (OMIM: 123320,192600,601253,606072,60780 ( 151) 1037 245.8 2e-65 NP_001166366 (OMIM: 601047,606721,612526,615343) c ( 147) 703 169.3 2.1e-42 NP_001166368 (OMIM: 601047,606721,612526,615343) c ( 147) 703 169.3 2.1e-42 NP_001166367 (OMIM: 601047,606721,612526,615343) c ( 147) 703 169.3 2.1e-42 NP_001744 (OMIM: 601047,606721,612526,615343) cave ( 178) 703 169.4 2.4e-42 NP_001193676 (OMIM: 601048) caveolin-2 isoform b [ ( 149) 327 83.2 1.7e-16 NP_001224 (OMIM: 601048) caveolin-2 isoform a [Hom ( 162) 327 83.2 1.8e-16 NP_001193677 (OMIM: 601048) caveolin-2 isoform d [ ( 79) 169 46.8 8.5e-06 >>NP_001225 (OMIM: 123320,192600,601253,606072,607801,61 (151 aa) initn: 1037 init1: 1037 opt: 1037 Z-score: 1295.5 bits: 245.8 E(85289): 2e-65 Smith-Waterman score: 1037; 100.0% identity (100.0% similar) in 151 aa overlap (1-151:1-151) 10 20 30 40 50 60 pF1KE3 MMAEEHTDLEAQIVKDIHCKEIDLVNRDPKNINEDIVKVDFEDVIAEPVGTYSFDGVWKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MMAEEHTDLEAQIVKDIHCKEIDLVNRDPKNINEDIVKVDFEDVIAEPVGTYSFDGVWKV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 SYTTFTVSKYWCYRLLSTLLGVPLALLWGFLFACISFCHIWAVVPCIKSYLIEIQCISHI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SYTTFTVSKYWCYRLLSTLLGVPLALLWGFLFACISFCHIWAVVPCIKSYLIEIQCISHI 70 80 90 100 110 120 130 140 150 pF1KE3 YSLCIRTFCNPLFAALGQVCSSIKVVLRKEV ::::::::::::::::::::::::::::::: NP_001 YSLCIRTFCNPLFAALGQVCSSIKVVLRKEV 130 140 150 >>NP_203123 (OMIM: 123320,192600,601253,606072,607801,61 (151 aa) initn: 1037 init1: 1037 opt: 1037 Z-score: 1295.5 bits: 245.8 E(85289): 2e-65 Smith-Waterman score: 1037; 100.0% identity (100.0% similar) in 151 aa overlap (1-151:1-151) 10 20 30 40 50 60 pF1KE3 MMAEEHTDLEAQIVKDIHCKEIDLVNRDPKNINEDIVKVDFEDVIAEPVGTYSFDGVWKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_203 MMAEEHTDLEAQIVKDIHCKEIDLVNRDPKNINEDIVKVDFEDVIAEPVGTYSFDGVWKV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 SYTTFTVSKYWCYRLLSTLLGVPLALLWGFLFACISFCHIWAVVPCIKSYLIEIQCISHI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_203 SYTTFTVSKYWCYRLLSTLLGVPLALLWGFLFACISFCHIWAVVPCIKSYLIEIQCISHI 70 80 90 100 110 120 130 140 150 pF1KE3 YSLCIRTFCNPLFAALGQVCSSIKVVLRKEV ::::::::::::::::::::::::::::::: NP_203 YSLCIRTFCNPLFAALGQVCSSIKVVLRKEV 130 140 150 >>NP_001166366 (OMIM: 601047,606721,612526,615343) caveo (147 aa) initn: 708 init1: 678 opt: 703 Z-score: 882.3 bits: 169.3 E(85289): 2.1e-42 Smith-Waterman score: 703; 64.0% identity (87.3% similar) in 150 aa overlap (2-151:1-147) 10 20 30 40 50 60 pF1KE3 MMAEEHTDLEAQIVKDIHCKEIDLVNRDPKNINEDIVKVDFEDVIAEPVGTYSFDGVWKV ::.: : . : : : :::::::::::..:.:.::.::::::::: ::.::::.::. NP_001 MADE---LSEKQVYDAHTKEIDLVNRDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKA 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 SYTTFTVSKYWCYRLLSTLLGVPLALLWGFLFACISFCHIWAVVPCIKSYLIEIQCISHI :.:::::.::: :::::.:.:.:.::.::. :: .:: :::::::::::.::::::::.. NP_001 SFTTFTVTKYWFYRLLSALFGIPMALIWGIYFAILSFLHIWAVVPCIKSFLIEIQCISRV 60 70 80 90 100 110 130 140 150 pF1KE3 YSLCIRTFCNPLFAALGQVCSSIKVVLRKEV ::. ..: :.::: :.:.. :.... :.::. NP_001 YSIYVHTVCDPLFEAVGKIFSNVRINLQKEI 120 130 140 >>NP_001166368 (OMIM: 601047,606721,612526,615343) caveo (147 aa) initn: 708 init1: 678 opt: 703 Z-score: 882.3 bits: 169.3 E(85289): 2.1e-42 Smith-Waterman score: 703; 64.0% identity (87.3% similar) in 150 aa overlap (2-151:1-147) 10 20 30 40 50 60 pF1KE3 MMAEEHTDLEAQIVKDIHCKEIDLVNRDPKNINEDIVKVDFEDVIAEPVGTYSFDGVWKV ::.: : . : : : :::::::::::..:.:.::.::::::::: ::.::::.::. NP_001 MADE---LSEKQVYDAHTKEIDLVNRDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKA 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 SYTTFTVSKYWCYRLLSTLLGVPLALLWGFLFACISFCHIWAVVPCIKSYLIEIQCISHI :.:::::.::: :::::.:.:.:.::.::. :: .:: :::::::::::.::::::::.. NP_001 SFTTFTVTKYWFYRLLSALFGIPMALIWGIYFAILSFLHIWAVVPCIKSFLIEIQCISRV 60 70 80 90 100 110 130 140 150 pF1KE3 YSLCIRTFCNPLFAALGQVCSSIKVVLRKEV ::. ..: :.::: :.:.. :.... :.::. NP_001 YSIYVHTVCDPLFEAVGKIFSNVRINLQKEI 120 130 140 >>NP_001166367 (OMIM: 601047,606721,612526,615343) caveo (147 aa) initn: 708 init1: 678 opt: 703 Z-score: 882.3 bits: 169.3 E(85289): 2.1e-42 Smith-Waterman score: 703; 64.0% identity (87.3% similar) in 150 aa overlap (2-151:1-147) 10 20 30 40 50 60 pF1KE3 MMAEEHTDLEAQIVKDIHCKEIDLVNRDPKNINEDIVKVDFEDVIAEPVGTYSFDGVWKV ::.: : . : : : :::::::::::..:.:.::.::::::::: ::.::::.::. NP_001 MADE---LSEKQVYDAHTKEIDLVNRDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKA 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 SYTTFTVSKYWCYRLLSTLLGVPLALLWGFLFACISFCHIWAVVPCIKSYLIEIQCISHI :.:::::.::: :::::.:.:.:.::.::. :: .:: :::::::::::.::::::::.. NP_001 SFTTFTVTKYWFYRLLSALFGIPMALIWGIYFAILSFLHIWAVVPCIKSFLIEIQCISRV 60 70 80 90 100 110 130 140 150 pF1KE3 YSLCIRTFCNPLFAALGQVCSSIKVVLRKEV ::. ..: :.::: :.:.. :.... :.::. NP_001 YSIYVHTVCDPLFEAVGKIFSNVRINLQKEI 120 130 140 >>NP_001744 (OMIM: 601047,606721,612526,615343) caveolin (178 aa) initn: 708 init1: 678 opt: 703 Z-score: 881.3 bits: 169.4 E(85289): 2.4e-42 Smith-Waterman score: 703; 64.0% identity (87.3% similar) in 150 aa overlap (2-151:32-178) 10 20 30 pF1KE3 MMAEEHTDLEAQIVKDIHCKEIDLVNRDPKN ::.: : . : : : :::::::::::. NP_001 SGGKYVDSEGHLYTVPIREQGNIYKPNNKAMADE---LSEKQVYDAHTKEIDLVNRDPKH 10 20 30 40 50 40 50 60 70 80 90 pF1KE3 INEDIVKVDFEDVIAEPVGTYSFDGVWKVSYTTFTVSKYWCYRLLSTLLGVPLALLWGFL .:.:.::.::::::::: ::.::::.::.:.:::::.::: :::::.:.:.:.::.::. NP_001 LNDDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFGIPMALIWGIY 60 70 80 90 100 110 100 110 120 130 140 150 pF1KE3 FACISFCHIWAVVPCIKSYLIEIQCISHIYSLCIRTFCNPLFAALGQVCSSIKVVLRKEV :: .:: :::::::::::.::::::::..::. ..: :.::: :.:.. :.... :.::. NP_001 FAILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHTVCDPLFEAVGKIFSNVRINLQKEI 120 130 140 150 160 170 >>NP_001193676 (OMIM: 601048) caveolin-2 isoform b [Homo (149 aa) initn: 332 init1: 298 opt: 327 Z-score: 417.0 bits: 83.2 E(85289): 1.7e-16 Smith-Waterman score: 327; 39.2% identity (72.0% similar) in 125 aa overlap (26-150:26-149) 10 20 30 40 50 60 pF1KE3 MMAEEHTDLEAQIVKDIHCKEIDLVNRDPKNINEDIVKVDFEDVIAEPVGTYSFDGVWKV .:::. .: . :. ::::::::: :.::: :: NP_001 MDDDSYSHHSGLEYADPEKFADSDQDRDPHRLNSHL-KLGFEDVIAEPVTTHSFDKVWIC 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 SYTTFTVSKYWCYRLLSTLLGVPLALLWGFLFACISFCHIWAVVPCIKSYLIEIQCISHI :.. : .::: :..:...:..:::.. :.::: .: ::: ..: .:. :. . .. : NP_001 SHALFEISKYVMYKFLTVFLAIPLAFIAGILFATLSCLHIWILMPFVKTCLMVLPSVQTI 60 70 80 90 100 110 130 140 150 pF1KE3 YSLCIRTFCNPLFAALGQVCSSIKVVLRKEV .. .. :: ...:. ::... : .. NP_001 WKSVTDVIIAPLCTSVGRCFSSVSLQLSQD 120 130 140 >>NP_001224 (OMIM: 601048) caveolin-2 isoform a [Homo sa (162 aa) initn: 332 init1: 298 opt: 327 Z-score: 416.5 bits: 83.2 E(85289): 1.8e-16 Smith-Waterman score: 327; 39.2% identity (72.0% similar) in 125 aa overlap (26-150:39-162) 10 20 30 40 50 pF1KE3 MMAEEHTDLEAQIVKDIHCKEIDLVNRDPKNINEDIVKVDFEDVIAEPVGTYSFD .:::. .: . :. ::::::::: :.::: NP_001 DVQLFMDDDSYSHHSGLEYADPEKFADSDQDRDPHRLNSHL-KLGFEDVIAEPVTTHSFD 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE3 GVWKVSYTTFTVSKYWCYRLLSTLLGVPLALLWGFLFACISFCHIWAVVPCIKSYLIEIQ :: :.. : .::: :..:...:..:::.. :.::: .: ::: ..: .:. :. . NP_001 KVWICSHALFEISKYVMYKFLTVFLAIPLAFIAGILFATLSCLHIWILMPFVKTCLMVLP 70 80 90 100 110 120 120 130 140 150 pF1KE3 CISHIYSLCIRTFCNPLFAALGQVCSSIKVVLRKEV .. :.. .. :: ...:. ::... : .. NP_001 SVQTIWKSVTDVIIAPLCTSVGRCFSSVSLQLSQD 130 140 150 160 >>NP_001193677 (OMIM: 601048) caveolin-2 isoform d [Homo (79 aa) initn: 155 init1: 140 opt: 169 Z-score: 225.1 bits: 46.8 E(85289): 8.5e-06 Smith-Waterman score: 169; 30.8% identity (71.8% similar) in 78 aa overlap (73-150:2-79) 50 60 70 80 90 100 pF1KE3 DVIAEPVGTYSFDGVWKVSYTTFTVSKYWCYRLLSTLLGVPLALLWGFLFACISFCHIWA :..:...:..:::.. :.::: .: ::: NP_001 MYKFLTVFLAIPLAFIAGILFATLSCLHIWI 10 20 30 110 120 130 140 150 pF1KE3 VVPCIKSYLIEIQCISHIYSLCIRTFCNPLFAALGQVCSSIKVVLRKEV ..: .:. :. . .. :.. .. :: ...:. ::... : .. NP_001 LMPFVKTCLMVLPSVQTIWKSVTDVIIAPLCTSVGRCFSSVSLQLSQD 40 50 60 70 151 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 22:53:30 2016 done: Sat Nov 5 22:53:31 2016 Total Scan time: 4.420 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]