FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3028, 151 aa 1>>>pF1KE3028 151 - 151 aa - 151 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.5212+/-0.000846; mu= 16.5798+/- 0.051 mean_var=66.1414+/-13.857, 0's: 0 Z-trim(106.4): 8 B-trim: 47 in 1/48 Lambda= 0.157702 statistics sampled from 8956 (8960) to 8956 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.665), E-opt: 0.2 (0.275), width: 16 Scan time: 1.630 The best scores are: opt bits E(32554) CCDS2569.1 CAV3 gene_id:859|Hs108|chr3 ( 151) 1037 244.2 2.3e-65 CCDS55156.1 CAV1 gene_id:857|Hs108|chr7 ( 147) 703 168.2 1.7e-42 CCDS5767.1 CAV1 gene_id:857|Hs108|chr7 ( 178) 703 168.2 2e-42 CCDS5766.1 CAV2 gene_id:858|Hs108|chr7 ( 162) 327 82.7 1e-16 >>CCDS2569.1 CAV3 gene_id:859|Hs108|chr3 (151 aa) initn: 1037 init1: 1037 opt: 1037 Z-score: 1286.9 bits: 244.2 E(32554): 2.3e-65 Smith-Waterman score: 1037; 100.0% identity (100.0% similar) in 151 aa overlap (1-151:1-151) 10 20 30 40 50 60 pF1KE3 MMAEEHTDLEAQIVKDIHCKEIDLVNRDPKNINEDIVKVDFEDVIAEPVGTYSFDGVWKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS25 MMAEEHTDLEAQIVKDIHCKEIDLVNRDPKNINEDIVKVDFEDVIAEPVGTYSFDGVWKV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 SYTTFTVSKYWCYRLLSTLLGVPLALLWGFLFACISFCHIWAVVPCIKSYLIEIQCISHI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS25 SYTTFTVSKYWCYRLLSTLLGVPLALLWGFLFACISFCHIWAVVPCIKSYLIEIQCISHI 70 80 90 100 110 120 130 140 150 pF1KE3 YSLCIRTFCNPLFAALGQVCSSIKVVLRKEV ::::::::::::::::::::::::::::::: CCDS25 YSLCIRTFCNPLFAALGQVCSSIKVVLRKEV 130 140 150 >>CCDS55156.1 CAV1 gene_id:857|Hs108|chr7 (147 aa) initn: 708 init1: 678 opt: 703 Z-score: 876.3 bits: 168.2 E(32554): 1.7e-42 Smith-Waterman score: 703; 64.0% identity (87.3% similar) in 150 aa overlap (2-151:1-147) 10 20 30 40 50 60 pF1KE3 MMAEEHTDLEAQIVKDIHCKEIDLVNRDPKNINEDIVKVDFEDVIAEPVGTYSFDGVWKV ::.: : . : : : :::::::::::..:.:.::.::::::::: ::.::::.::. CCDS55 MADE---LSEKQVYDAHTKEIDLVNRDPKHLNDDVVKIDFEDVIAEPEGTHSFDGIWKA 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 SYTTFTVSKYWCYRLLSTLLGVPLALLWGFLFACISFCHIWAVVPCIKSYLIEIQCISHI :.:::::.::: :::::.:.:.:.::.::. :: .:: :::::::::::.::::::::.. CCDS55 SFTTFTVTKYWFYRLLSALFGIPMALIWGIYFAILSFLHIWAVVPCIKSFLIEIQCISRV 60 70 80 90 100 110 130 140 150 pF1KE3 YSLCIRTFCNPLFAALGQVCSSIKVVLRKEV ::. ..: :.::: :.:.. :.... :.::. CCDS55 YSIYVHTVCDPLFEAVGKIFSNVRINLQKEI 120 130 140 >>CCDS5767.1 CAV1 gene_id:857|Hs108|chr7 (178 aa) initn: 708 init1: 678 opt: 703 Z-score: 875.3 bits: 168.2 E(32554): 2e-42 Smith-Waterman score: 703; 64.0% identity (87.3% similar) in 150 aa overlap (2-151:32-178) 10 20 30 pF1KE3 MMAEEHTDLEAQIVKDIHCKEIDLVNRDPKN ::.: : . : : : :::::::::::. CCDS57 SGGKYVDSEGHLYTVPIREQGNIYKPNNKAMADE---LSEKQVYDAHTKEIDLVNRDPKH 10 20 30 40 50 40 50 60 70 80 90 pF1KE3 INEDIVKVDFEDVIAEPVGTYSFDGVWKVSYTTFTVSKYWCYRLLSTLLGVPLALLWGFL .:.:.::.::::::::: ::.::::.::.:.:::::.::: :::::.:.:.:.::.::. CCDS57 LNDDVVKIDFEDVIAEPEGTHSFDGIWKASFTTFTVTKYWFYRLLSALFGIPMALIWGIY 60 70 80 90 100 110 100 110 120 130 140 150 pF1KE3 FACISFCHIWAVVPCIKSYLIEIQCISHIYSLCIRTFCNPLFAALGQVCSSIKVVLRKEV :: .:: :::::::::::.::::::::..::. ..: :.::: :.:.. :.... :.::. CCDS57 FAILSFLHIWAVVPCIKSFLIEIQCISRVYSIYVHTVCDPLFEAVGKIFSNVRINLQKEI 120 130 140 150 160 170 >>CCDS5766.1 CAV2 gene_id:858|Hs108|chr7 (162 aa) initn: 332 init1: 298 opt: 327 Z-score: 413.5 bits: 82.7 E(32554): 1e-16 Smith-Waterman score: 327; 39.2% identity (72.0% similar) in 125 aa overlap (26-150:39-162) 10 20 30 40 50 pF1KE3 MMAEEHTDLEAQIVKDIHCKEIDLVNRDPKNINEDIVKVDFEDVIAEPVGTYSFD .:::. .: . :. ::::::::: :.::: CCDS57 DVQLFMDDDSYSHHSGLEYADPEKFADSDQDRDPHRLNSHL-KLGFEDVIAEPVTTHSFD 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE3 GVWKVSYTTFTVSKYWCYRLLSTLLGVPLALLWGFLFACISFCHIWAVVPCIKSYLIEIQ :: :.. : .::: :..:...:..:::.. :.::: .: ::: ..: .:. :. . CCDS57 KVWICSHALFEISKYVMYKFLTVFLAIPLAFIAGILFATLSCLHIWILMPFVKTCLMVLP 70 80 90 100 110 120 120 130 140 150 pF1KE3 CISHIYSLCIRTFCNPLFAALGQVCSSIKVVLRKEV .. :.. .. :: ...:. ::... : .. CCDS57 SVQTIWKSVTDVIIAPLCTSVGRCFSSVSLQLSQD 130 140 150 160 151 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 22:53:29 2016 done: Sat Nov 5 22:53:30 2016 Total Scan time: 1.630 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]