Result of FASTA (omim) for
pFN21AB6904
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6904, 223 aa
1>>>pF1KB6904 223 - 223 aa - 223 aa
Library: /omim/omim.rfq.tfa
64369986 residues in 92320 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.3929+/-0.000326; mu= 19.0676+/- 0.020
mean_var=62.8771+/-12.658, 0's: 0 Z-trim(116.2): 22 B-trim: 283 in 1/48
Lambda= 0.161744
statistics sampled from 28354 (28376) to 28354 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.307), width: 16
Scan time: 2.980
The best scores are: opt bits E(92320)
NP_005205 (OMIM: 123890,140300,152700,601388,60975 ( 223) 1501 358.4 5.9e-99
NP_001032720 (OMIM: 123890,140300,152700,601388,60 ( 174) 1021 246.3 2.6e-65
NP_006130 (OMIM: 186760) T-cell-specific surface g ( 220) 280 73.5 3.4e-13
XP_011510496 (OMIM: 186760) T-cell-specific surfac ( 234) 275 72.3 8.1e-13
NP_001138939 (OMIM: 609148,611550) natural cytotox ( 190) 151 43.3 0.00036
NP_001138938 (OMIM: 609148,611550) natural cytotox ( 177) 149 42.8 0.00047
XP_011510499 (OMIM: 186760) T-cell-specific surfac ( 136) 129 38.0 0.0099
>>NP_005205 (OMIM: 123890,140300,152700,601388,609755,61 (223 aa)
initn: 1501 init1: 1501 opt: 1501 Z-score: 1898.1 bits: 358.4 E(92320): 5.9e-99
Smith-Waterman score: 1501; 99.6% identity (100.0% similar) in 223 aa overlap (1-223:1-223)
10 20 30 40 50 60
pF1KB6 MACLGFQRHKAQLNLAARTWPCTLLFFLLFIPVFCKAMHVAQPAVVLASSRGIASFVCEY
::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::
NP_005 MACLGFQRHKAQLNLATRTWPCTLLFFLLFIPVFCKAMHVAQPAVVLASSRGIASFVCEY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 ASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 AMDTGLYICKVELMYPPPYYLGIGNGTQIYVIDPEPCPDSDFLLWILAAVSSGLFFYSFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 AMDTGLYICKVELMYPPPYYLGIGNGTQIYVIDPEPCPDSDFLLWILAAVSSGLFFYSFL
130 140 150 160 170 180
190 200 210 220
pF1KB6 LTAVSLSKMLKKRSPLTTGVYVKMPPTEPECEKQFQPYFIPIN
:::::::::::::::::::::::::::::::::::::::::::
NP_005 LTAVSLSKMLKKRSPLTTGVYVKMPPTEPECEKQFQPYFIPIN
190 200 210 220
>>NP_001032720 (OMIM: 123890,140300,152700,601388,609755 (174 aa)
initn: 1021 init1: 1021 opt: 1021 Z-score: 1294.2 bits: 246.3 E(92320): 2.6e-65
Smith-Waterman score: 1021; 96.8% identity (97.5% similar) in 158 aa overlap (1-158:1-158)
10 20 30 40 50 60
pF1KB6 MACLGFQRHKAQLNLAARTWPCTLLFFLLFIPVFCKAMHVAQPAVVLASSRGIASFVCEY
::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::
NP_001 MACLGFQRHKAQLNLATRTWPCTLLFFLLFIPVFCKAMHVAQPAVVLASSRGIASFVCEY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 ASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 AMDTGLYICKVELMYPPPYYLGIGNGTQIYVIDPEPCPDSDFLLWILAAVSSGLFFYSFL
:::::::::::::::::::::::::::::::: : :
NP_001 AMDTGLYICKVELMYPPPYYLGIGNGTQIYVIAKEKKPSYNRGLCENAPNRARM
130 140 150 160 170
190 200 210 220
pF1KB6 LTAVSLSKMLKKRSPLTTGVYVKMPPTEPECEKQFQPYFIPIN
>>NP_006130 (OMIM: 186760) T-cell-specific surface glyco (220 aa)
initn: 150 init1: 128 opt: 280 Z-score: 358.4 bits: 73.5 E(92320): 3.4e-13
Smith-Waterman score: 280; 31.0% identity (61.9% similar) in 210 aa overlap (24-221:5-212)
10 20 30 40 50
pF1KB6 MACLGFQRHKAQLNLAARTWPCTLLFFLLF--IPVFCKAMHVAQPAVVLASSRGIASFVC
:: . :: : : . . : : ...: . .. .. :
NP_006 MLRLLLALNLFPSIQVTGNKILVKQSPMLVAYDNAV-NLSC
10 20 30 40
60 70 80 90 100 110
pF1KB6 EYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDS--ICTGTSSGNQVNLTI
.:. . : :... . :: : :::.. ....: . . : : ....:.. .
NP_006 KYSYNLFSREFRASLHKGLDSAV-EVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYL
50 60 70 80 90
120 130 140 150 160 170
pF1KB6 QGLRAMDTGLYICKVELMYPPPYYLG-IGNGTQIYVIDPEPCPDSDFL-----LWILAAV
:.: . .: .:.::.:.:::::: . .::: :.: . ::. : .:.:..:
NP_006 QNLYVNQTDIYFCKIEVMYPPPYLDNEKSNGTIIHVKGKHLCPSPLFPGPSKPFWVLVVV
100 110 120 130 140 150
180 190 200 210 220
pF1KB6 SSGLFFYSFLLTAVSLSKMLK-KRSPLTTGVYVKMPPTEP-ECEKQFQPYFIPIN
.. : ::.:.:.. . .. ::: : . :..: : .: .:..::: :
NP_006 GGVLACYSLLVTVAFIIFWVRSKRSRLLHSDYMNMTPRRPGPTRKHYQPYAPPRDFAAYR
160 170 180 190 200 210
NP_006 S
220
>>XP_011510496 (OMIM: 186760) T-cell-specific surface gl (234 aa)
initn: 150 init1: 128 opt: 275 Z-score: 351.7 bits: 72.3 E(92320): 8.1e-13
Smith-Waterman score: 275; 30.7% identity (63.0% similar) in 192 aa overlap (40-221:37-226)
10 20 30 40 50 60
pF1KB6 KAQLNLAARTWPCTLLFFLLFIPVFCKAMHVAQPAVVLASSRGIASFVCEYASPGKATEV
: : ...: . .. .. :.:. . :
XP_011 ALIMCPKGMVAVVVAVDDGDSQALAGNKILVKQSPMLVAYDNAV-NLSCKYSYNLFSREF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 RVTVLRQADSQVTEVCAATYMMGNELTFLDDS--ICTGTSSGNQVNLTIQGLRAMDTGLY
:... . :: : :::.. ....: . . : : ....:.. .:.: . .: .:
XP_011 RASLHKGLDSAV-EVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQTDIY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 ICKVELMYPPPYYLG-IGNGTQIYVIDPEPCPDSDFL-----LWILAAVSSGLFFYSFLL
.::.:.:::::: . .::: :.: . ::. : .:.:..:.. : ::.:.
XP_011 FCKIEVMYPPPYLDNEKSNGTIIHVKGKHLCPSPLFPGPSKPFWVLVVVGGVLACYSLLV
130 140 150 160 170 180
190 200 210 220
pF1KB6 TAVSLSKMLK-KRSPLTTGVYVKMPPTEP-ECEKQFQPYFIPIN
:.. . .. ::: : . :..: : .: .:..::: :
XP_011 TVAFIIFWVRSKRSRLLHSDYMNMTPRRPGPTRKHYQPYAPPRDFAAYRS
190 200 210 220 230
>>NP_001138939 (OMIM: 609148,611550) natural cytotoxicit (190 aa)
initn: 56 init1: 35 opt: 151 Z-score: 196.5 bits: 43.3 E(92320): 0.00036
Smith-Waterman score: 151; 26.5% identity (54.6% similar) in 196 aa overlap (24-211:6-189)
10 20 30 40 50
pF1KB6 MACLGFQRHKAQLNLAARTWPCTLLFFLLFIPVFCKAMHVAQPAVVLASSRGIASFV-CE
::.... : : :. :.:: . . .: ..:. :
NP_001 MAWMLLLILIMVHPGSC-ALWVSQPPEI-RTLEGSSAFLPCS
10 20 30 40
60 70 80 90 100 110
pF1KB6 Y-ASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQG
. :: :. . :: .:. :: .: . ..:. : .: .:..: :.
NP_001 FNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFL---HDHQAELHIRD
50 60 70 80 90
120 130 140 150 160 170
pF1KB6 LRAMDTGLYICKVELMYPPPYYLGIGNGTQIYVIDPEPCPDSDFLLWILAAVSSGLFFYS
.:. :...:.:.::.. .: ::::.. : .: . .: . : :.. :
NP_001 VRGHDASIYVCRVEVL---GLGVGTGNGTRLVVEKEHPQLGAGTVLLLRA----GFYAVS
100 110 120 130 140 150
180 190 200 210 220
pF1KB6 FLLTAVSLSKMLKKRSPLTTGVYVKMP--PT----EPECEKQFQPYFIPIN
:: .::. . . . . :.. . : ::.:
NP_001 FLSVAVGSTVYYQGKCHCHMGTHCHSSDGPRGVIPEPRCP
160 170 180 190
>>NP_001138938 (OMIM: 609148,611550) natural cytotoxicit (177 aa)
initn: 56 init1: 35 opt: 149 Z-score: 194.4 bits: 42.8 E(92320): 0.00047
Smith-Waterman score: 149; 28.8% identity (57.1% similar) in 163 aa overlap (24-184:6-156)
10 20 30 40 50
pF1KB6 MACLGFQRHKAQLNLAARTWPCTLLFFLLFIPVFCKAMHVAQPAVVLASSRGIASFV-CE
::.... : : :. :.:: . . .: ..:. :
NP_001 MAWMLLLILIMVHPGSC-ALWVSQPPEI-RTLEGSSAFLPCS
10 20 30 40
60 70 80 90 100 110
pF1KB6 Y-ASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQG
. :: :. . :: .:. :: .: . ..:. : .: .:..: :.
NP_001 FNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFL---HDHQAELHIRD
50 60 70 80 90
120 130 140 150 160 170
pF1KB6 LRAMDTGLYICKVELMYPPPYYLGIGNGTQIYVIDPEPCPDSDFLLWILAAVSSGLFFYS
.:. :...:.:.::.. .: ::::.. : .: . .: . : :.. :
NP_001 VRGHDASIYVCRVEVL---GLGVGTGNGTRLVVEKEHPQLGAGTVLLLRA----GFYAVS
100 110 120 130 140 150
180 190 200 210 220
pF1KB6 FLLTAVSLSKMLKKRSPLTTGVYVKMPPTEPECEKQFQPYFIPIN
:: .::
NP_001 FLSVAVGSTVYYQGKYAKSTLSGFPQL
160 170
>>XP_011510499 (OMIM: 186760) T-cell-specific surface gl (136 aa)
initn: 65 init1: 43 opt: 129 Z-score: 170.6 bits: 38.0 E(92320): 0.0099
Smith-Waterman score: 129; 34.5% identity (61.9% similar) in 84 aa overlap (145-221:45-128)
120 130 140 150 160
pF1KB6 TIQGLRAMDTGLYICKVELMYPPPYYLGIGNGTQIYVIDPEPCPDSDFL-----LWILAA
::: :.: . ::. : .:.:..
XP_011 QVTGNKILVKQSPMLVAYDNAVNLSYNEKSNGTIIHVKGKHLCPSPLFPGPSKPFWVLVV
20 30 40 50 60 70
170 180 190 200 210 220
pF1KB6 VSSGLFFYSFLLTAVSLSKMLK-KRSPLTTGVYVKMPPTEP-ECEKQFQPYFIPIN
:.. : ::.:.:.. . .. ::: : . :..: : .: .:..::: :
XP_011 VGGVLACYSLLVTVAFIIFWVRSKRSRLLHSDYMNMTPRRPGPTRKHYQPYAPPRDFAAY
80 90 100 110 120 130
XP_011 RS
223 residues in 1 query sequences
64369986 residues in 92320 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Oct 24 21:38:19 2019 done: Thu Oct 24 21:38:19 2019
Total Scan time: 2.980 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]