FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2156, 419 aa
  1>>>pF1KE2156 419 - 419 aa - 419 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0246+/-0.00121; mu= 13.5956+/- 0.072
 mean_var=78.7513+/-15.452, 0's: 0 Z-trim(103.1): 23  B-trim: 124 in 1/48
 Lambda= 0.144526
 statistics sampled from 7246 (7249) to 7246 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.591), E-opt: 0.2 (0.223), width:  16
 Scan time:  2.640

The best scores are:                                      opt bits E(32554)
CCDS2245.1 HAT1 gene_id:8520|Hs108|chr2            ( 419) 2784 590.5  1e-168


>>CCDS2245.1 HAT1 gene_id:8520|Hs108|chr2                 (419 aa)
 initn: 2784 init1: 2784 opt: 2784  Z-score: 3142.6  bits: 590.5 E(32554): 1e-168
Smith-Waterman score: 2784; 99.8% identity (100.0% similar) in 419 aa overlap (1-419:1-419)

               10        20        30        40        50        60
pF1KE2 MAGFGAMEKFLVEYKSAVEKKLAEYKCNTNTAIELKLVRFPEDLENDIRTFFPEYTHQLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 MAGFGAMEKFLVEYKSAVEKKLAEYKCNTNTAIELKLVRFPEDLENDIRTFFPEYTHQLF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 GDDETAFGYKGLKILLYYIAGSLSTMFRVEYASKVDENFDCVEADDVEGKIRQIIPPGFC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 GDDETAFGYKGLKILLYYIAGSLSTMFRVEYASKVDENFDCVEADDVEGKIRQIIPPGFC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 TNTNDFLSLLEKEVDFKPFGTLLHTYSVLSPTGGENFTFQIYKADMTCRGFREYHERLQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 TNTNDFLSLLEKEVDFKPFGTLLHTYSVLSPTGGENFTFQIYKADMTCRGFREYHERLQT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 FLMWFIETASFIDVDDERWHYFLVFEKYNKDGATLFATVGYMTVYNYYVYPDKTRPRVSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 FLMWFIETASFIDVDDERWHYFLVFEKYNKDGATLFATVGYMTVYNYYVYPDKTRPRVSQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 MLILTPFQGQGHGAQLLETVHRYYTEFPTVLDITAEDPSKSYVKLRDFVLVKLCQDLPCF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 MLILTPFQGQGHGAQLLETVHRYYTEFPTVLDITAEDPSKSYVKLRDFVLVKLCQDLPCF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 SREKLMQGFNEDMAIEAQQKFKINKQHARRVYEILRLLVTDMSDAEQYRSYRLDIKRRLI
       :::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 SREKLMQGFNEDMVIEAQQKFKINKQHARRVYEILRLLVTDMSDAEQYRSYRLDIKRRLI
              310       320       330       340       350       360

              370       380       390       400       410         
pF1KE2 SPYKKKQRDLAKMRKCLRPEELTNQMNQIEISMQHEQLEESFQELVEDYRRVIERLAQE
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 SPYKKKQRDLAKMRKCLRPEELTNQMNQIEISMQHEQLEESFQELVEDYRRVIERLAQE
              370       380       390       400       410         




419 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 18:12:29 2016 done: Sun Nov  6 18:12:29 2016
 Total Scan time:  2.640 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]