Result of FASTA (omim) for
pFN21AB9897
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9897, 510 aa
1>>>pF1KB9897 510 - 510 aa - 510 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 14.0088+/-0.000759; mu= -23.2357+/- 0.045
mean_var=1148.5217+/-261.513, 0's: 0 Z-trim(114.2): 194 B-trim: 0 in 0/55
Lambda= 0.037845
statistics sampled from 23785 (23913) to 23785 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.633), E-opt: 0.2 (0.28), width: 16
Scan time: 10.580
The best scores are: opt bits E(85289)
NP_001129124 (OMIM: 176871) interferon-induced, do ( 510) 3303 197.5 7.8e-50
XP_016859992 (OMIM: 176871) PREDICTED: interferon- ( 508) 2177 136.0 2.5e-31
NP_002750 (OMIM: 176871) interferon-induced, doubl ( 551) 1664 108.1 7.1e-23
XP_011531289 (OMIM: 176871) PREDICTED: interferon- ( 551) 1664 108.1 7.1e-23
NP_001129123 (OMIM: 176871) interferon-induced, do ( 551) 1664 108.1 7.1e-23
>>NP_001129124 (OMIM: 176871) interferon-induced, double (510 aa)
initn: 3303 init1: 3303 opt: 3303 Z-score: 1015.6 bits: 197.5 E(85289): 7.8e-50
Smith-Waterman score: 3303; 100.0% identity (100.0% similar) in 510 aa overlap (1-510:1-510)
10 20 30 40 50 60
pF1KB9 MAGDLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAGDLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 KEAKNAAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KEAKNAAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 CASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEETSVKSDYLSSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEETSVKSDYLSSG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 SFATTCESQSNSLVTSTLASESSSEGDFSADTSEINSNSDSLNSSSLLMNGLRNNQRKAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SFATTCESQSNSLVTSTLASESSSEGDFSADTSEINSNSDSLNSSSLLMNGLRNNQRKAK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 RSLAPRFDLPDMKETKYTVDKRKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSDDSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RSLAPRFDLPDMKETKYTVDKRKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSDDSL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 ESSDYDPENSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ESSDYDPENSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 VDYIHSKKLIHRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VDYIHSKKLIHRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQIS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 SQDYGKEVDLYALGLILAELLHVCDTAFETSKFFTDLRDGIISDIFDKKEKTLLQKLLSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQDYGKEVDLYALGLILAELLHVCDTAFETSKFFTDLRDGIISDIFDKKEKTLLQKLLSK
430 440 450 460 470 480
490 500 510
pF1KB9 KPEDRPNTSEILRTLTVWKKSPEKNERHTC
::::::::::::::::::::::::::::::
NP_001 KPEDRPNTSEILRTLTVWKKSPEKNERHTC
490 500 510
>>XP_016859992 (OMIM: 176871) PREDICTED: interferon-indu (508 aa)
initn: 2288 init1: 1664 opt: 2177 Z-score: 683.4 bits: 136.0 E(85289): 2.5e-31
Smith-Waterman score: 2838; 84.8% identity (84.8% similar) in 551 aa overlap (1-510:1-508)
10 20 30 40 50 60
pF1KB9 MAGDLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAGDLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 KEAKNAAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KEAKNAAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 CASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEETSVKSDYLSSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEETSVKSDYLSSG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 SFATTCESQSNSLVTSTLASESSSEGDFSADTSEINSNSDSLNSSSLLMNGLRNNQRKAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SFATTCESQSNSLVTSTLASESSSEGDFSADTSEINSNSDSLNSSSLLMNGLRNNQRKAK
190 200 210 220 230 240
250 260
pF1KB9 RSLAPRFDLPDMKETKYTVDKR--------------------------------------
::::::::::::::::::::::
XP_016 RSLAPRFDLPDMKETKYTVDKRFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKY
250 260 270 280 290 300
270 280 290 300 310
pF1KB9 ---KAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSDDSLESSDYDPENSKNSSRSKTK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NNEKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSDDSLESSDYDPENSKNSSRSKTK
310 320 330 340 350 360
320 330 340 350 360 370
pF1KB9 CLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLIHRDLKPSNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLIHRDLK----
370 380 390 400 410
380 390 400 410 420 430
pF1KB9 FLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAE
:::::::::::::::::::::
XP_016 ---------------------------------------ISSQDYGKEVDLYALGLILAE
420 430
440 450 460 470 480 490
pF1KB9 LLHVCDTAFETSKFFTDLRDGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLHVCDTAFETSKFFTDLRDGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWK
440 450 460 470 480 490
500 510
pF1KB9 KSPEKNERHTC
:::::::::::
XP_016 KSPEKNERHTC
500
>>NP_002750 (OMIM: 176871) interferon-induced, double-st (551 aa)
initn: 1703 init1: 1664 opt: 1664 Z-score: 531.7 bits: 108.1 E(85289): 7.1e-23
Smith-Waterman score: 3141; 92.4% identity (92.4% similar) in 542 aa overlap (1-501:1-542)
10 20 30 40 50 60
pF1KB9 MAGDLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MAGDLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 KEAKNAAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 KEAKNAAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 CASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEETSVKSDYLSSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 CASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEETSVKSDYLSSG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 SFATTCESQSNSLVTSTLASESSSEGDFSADTSEINSNSDSLNSSSLLMNGLRNNQRKAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 SFATTCESQSNSLVTSTLASESSSEGDFSADTSEINSNSDSLNSSSLLMNGLRNNQRKAK
190 200 210 220 230 240
250 260
pF1KB9 RSLAPRFDLPDMKETKYTVDKR--------------------------------------
::::::::::::::::::::::
NP_002 RSLAPRFDLPDMKETKYTVDKRFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKY
250 260 270 280 290 300
270 280 290 300 310
pF1KB9 ---KAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSDDSLESSDYDPENSKNSSRSKTK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 NNEKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSDDSLESSDYDPENSKNSSRSKTK
310 320 330 340 350 360
320 330 340 350 360 370
pF1KB9 CLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLIHRDLKPSNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 CLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLIHRDLKPSNI
370 380 390 400 410 420
380 390 400 410 420 430
pF1KB9 FLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 FLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAE
430 440 450 460 470 480
440 450 460 470 480 490
pF1KB9 LLHVCDTAFETSKFFTDLRDGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LLHVCDTAFETSKFFTDLRDGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWK
490 500 510 520 530 540
500 510
pF1KB9 KSPEKNERHTC
::
NP_002 KSPEKNERHTC
550
>>XP_011531289 (OMIM: 176871) PREDICTED: interferon-indu (551 aa)
initn: 1703 init1: 1664 opt: 1664 Z-score: 531.7 bits: 108.1 E(85289): 7.1e-23
Smith-Waterman score: 3141; 92.4% identity (92.4% similar) in 542 aa overlap (1-501:1-542)
10 20 30 40 50 60
pF1KB9 MAGDLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAGDLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 KEAKNAAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KEAKNAAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 CASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEETSVKSDYLSSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEETSVKSDYLSSG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 SFATTCESQSNSLVTSTLASESSSEGDFSADTSEINSNSDSLNSSSLLMNGLRNNQRKAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SFATTCESQSNSLVTSTLASESSSEGDFSADTSEINSNSDSLNSSSLLMNGLRNNQRKAK
190 200 210 220 230 240
250 260
pF1KB9 RSLAPRFDLPDMKETKYTVDKR--------------------------------------
::::::::::::::::::::::
XP_011 RSLAPRFDLPDMKETKYTVDKRFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKY
250 260 270 280 290 300
270 280 290 300 310
pF1KB9 ---KAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSDDSLESSDYDPENSKNSSRSKTK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NNEKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSDDSLESSDYDPENSKNSSRSKTK
310 320 330 340 350 360
320 330 340 350 360 370
pF1KB9 CLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLIHRDLKPSNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLIHRDLKPSNI
370 380 390 400 410 420
380 390 400 410 420 430
pF1KB9 FLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAE
430 440 450 460 470 480
440 450 460 470 480 490
pF1KB9 LLHVCDTAFETSKFFTDLRDGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLHVCDTAFETSKFFTDLRDGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWK
490 500 510 520 530 540
500 510
pF1KB9 KSPEKNERHTC
::
XP_011 KSPEKNERHTC
550
>>NP_001129123 (OMIM: 176871) interferon-induced, double (551 aa)
initn: 1703 init1: 1664 opt: 1664 Z-score: 531.7 bits: 108.1 E(85289): 7.1e-23
Smith-Waterman score: 3141; 92.4% identity (92.4% similar) in 542 aa overlap (1-501:1-542)
10 20 30 40 50 60
pF1KB9 MAGDLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAGDLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 KEAKNAAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KEAKNAAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 CASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEETSVKSDYLSSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEETSVKSDYLSSG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 SFATTCESQSNSLVTSTLASESSSEGDFSADTSEINSNSDSLNSSSLLMNGLRNNQRKAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SFATTCESQSNSLVTSTLASESSSEGDFSADTSEINSNSDSLNSSSLLMNGLRNNQRKAK
190 200 210 220 230 240
250 260
pF1KB9 RSLAPRFDLPDMKETKYTVDKR--------------------------------------
::::::::::::::::::::::
NP_001 RSLAPRFDLPDMKETKYTVDKRFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKY
250 260 270 280 290 300
270 280 290 300 310
pF1KB9 ---KAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSDDSLESSDYDPENSKNSSRSKTK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NNEKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSDDSLESSDYDPENSKNSSRSKTK
310 320 330 340 350 360
320 330 340 350 360 370
pF1KB9 CLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLIHRDLKPSNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLIHRDLKPSNI
370 380 390 400 410 420
380 390 400 410 420 430
pF1KB9 FLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAE
430 440 450 460 470 480
440 450 460 470 480 490
pF1KB9 LLHVCDTAFETSKFFTDLRDGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLHVCDTAFETSKFFTDLRDGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWK
490 500 510 520 530 540
500 510
pF1KB9 KSPEKNERHTC
::
NP_001 KSPEKNERHTC
550
510 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 18:32:25 2016 done: Sun Nov 6 18:32:27 2016
Total Scan time: 10.580 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]