Result of FASTA (omim) for
pFN21AE2332
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2332, 551 aa
1>>>pF1KE2332 551 - 551 aa - 551 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 14.2269+/-0.000796; mu= -23.9992+/- 0.047
mean_var=1174.5227+/-267.569, 0's: 0 Z-trim(113.5): 201 B-trim: 0 in 0/55
Lambda= 0.037423
statistics sampled from 22705 (22829) to 22705 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.622), E-opt: 0.2 (0.268), width: 16
Scan time: 10.350
The best scores are: opt bits E(85289)
NP_002750 (OMIM: 176871) interferon-induced, doubl ( 551) 3576 210.5 1.1e-53
NP_001129123 (OMIM: 176871) interferon-induced, do ( 551) 3576 210.5 1.1e-53
XP_011531289 (OMIM: 176871) PREDICTED: interferon- ( 551) 3576 210.5 1.1e-53
XP_016859992 (OMIM: 176871) PREDICTED: interferon- ( 508) 2707 163.5 1.5e-39
NP_001129124 (OMIM: 176871) interferon-induced, do ( 510) 1664 107.2 1.3e-22
>>NP_002750 (OMIM: 176871) interferon-induced, double-st (551 aa)
initn: 3576 init1: 3576 opt: 3576 Z-score: 1084.5 bits: 210.5 E(85289): 1.1e-53
Smith-Waterman score: 3576; 100.0% identity (100.0% similar) in 551 aa overlap (1-551:1-551)
10 20 30 40 50 60
pF1KE2 MAGDLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MAGDLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 KEAKNAAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 KEAKNAAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 CASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEETSVKSDYLSSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 CASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEETSVKSDYLSSG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 SFATTCESQSNSLVTSTLASESSSEGDFSADTSEINSNSDSLNSSSLLMNGLRNNQRKAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 SFATTCESQSNSLVTSTLASESSSEGDFSADTSEINSNSDSLNSSSLLMNGLRNNQRKAK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 RSLAPRFDLPDMKETKYTVDKRFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 RSLAPRFDLPDMKETKYTVDKRFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 NNEKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSDDSLESSDYDPENSKNSSRSKTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 NNEKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSDDSLESSDYDPENSKNSSRSKTK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 CLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLIHRDLKPSNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 CLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLIHRDLKPSNI
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE2 FLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 FLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE2 LLHVCDTAFETSKFFTDLRDGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LLHVCDTAFETSKFFTDLRDGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWK
490 500 510 520 530 540
550
pF1KE2 KSPEKNERHTC
:::::::::::
NP_002 KSPEKNERHTC
550
>>NP_001129123 (OMIM: 176871) interferon-induced, double (551 aa)
initn: 3576 init1: 3576 opt: 3576 Z-score: 1084.5 bits: 210.5 E(85289): 1.1e-53
Smith-Waterman score: 3576; 100.0% identity (100.0% similar) in 551 aa overlap (1-551:1-551)
10 20 30 40 50 60
pF1KE2 MAGDLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAGDLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 KEAKNAAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KEAKNAAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 CASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEETSVKSDYLSSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEETSVKSDYLSSG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 SFATTCESQSNSLVTSTLASESSSEGDFSADTSEINSNSDSLNSSSLLMNGLRNNQRKAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SFATTCESQSNSLVTSTLASESSSEGDFSADTSEINSNSDSLNSSSLLMNGLRNNQRKAK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 RSLAPRFDLPDMKETKYTVDKRFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RSLAPRFDLPDMKETKYTVDKRFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 NNEKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSDDSLESSDYDPENSKNSSRSKTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NNEKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSDDSLESSDYDPENSKNSSRSKTK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 CLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLIHRDLKPSNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLIHRDLKPSNI
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE2 FLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE2 LLHVCDTAFETSKFFTDLRDGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLHVCDTAFETSKFFTDLRDGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWK
490 500 510 520 530 540
550
pF1KE2 KSPEKNERHTC
:::::::::::
NP_001 KSPEKNERHTC
550
>>XP_011531289 (OMIM: 176871) PREDICTED: interferon-indu (551 aa)
initn: 3576 init1: 3576 opt: 3576 Z-score: 1084.5 bits: 210.5 E(85289): 1.1e-53
Smith-Waterman score: 3576; 100.0% identity (100.0% similar) in 551 aa overlap (1-551:1-551)
10 20 30 40 50 60
pF1KE2 MAGDLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAGDLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 KEAKNAAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KEAKNAAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 CASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEETSVKSDYLSSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEETSVKSDYLSSG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 SFATTCESQSNSLVTSTLASESSSEGDFSADTSEINSNSDSLNSSSLLMNGLRNNQRKAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SFATTCESQSNSLVTSTLASESSSEGDFSADTSEINSNSDSLNSSSLLMNGLRNNQRKAK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 RSLAPRFDLPDMKETKYTVDKRFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RSLAPRFDLPDMKETKYTVDKRFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 NNEKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSDDSLESSDYDPENSKNSSRSKTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NNEKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSDDSLESSDYDPENSKNSSRSKTK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 CLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLIHRDLKPSNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLIHRDLKPSNI
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE2 FLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE2 LLHVCDTAFETSKFFTDLRDGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLHVCDTAFETSKFFTDLRDGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWK
490 500 510 520 530 540
550
pF1KE2 KSPEKNERHTC
:::::::::::
XP_011 KSPEKNERHTC
550
>>XP_016859992 (OMIM: 176871) PREDICTED: interferon-indu (508 aa)
initn: 2705 init1: 2705 opt: 2707 Z-score: 831.3 bits: 163.5 E(85289): 1.5e-39
Smith-Waterman score: 3203; 92.2% identity (92.2% similar) in 551 aa overlap (1-551:1-508)
10 20 30 40 50 60
pF1KE2 MAGDLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAGDLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 KEAKNAAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KEAKNAAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 CASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEETSVKSDYLSSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEETSVKSDYLSSG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 SFATTCESQSNSLVTSTLASESSSEGDFSADTSEINSNSDSLNSSSLLMNGLRNNQRKAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SFATTCESQSNSLVTSTLASESSSEGDFSADTSEINSNSDSLNSSSLLMNGLRNNQRKAK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 RSLAPRFDLPDMKETKYTVDKRFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RSLAPRFDLPDMKETKYTVDKRFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 NNEKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSDDSLESSDYDPENSKNSSRSKTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NNEKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSDDSLESSDYDPENSKNSSRSKTK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 CLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLIHRDLKPSNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLIHRDLK----
370 380 390 400 410
430 440 450 460 470 480
pF1KE2 FLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAE
:::::::::::::::::::::
XP_016 ---------------------------------------ISSQDYGKEVDLYALGLILAE
420 430
490 500 510 520 530 540
pF1KE2 LLHVCDTAFETSKFFTDLRDGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLHVCDTAFETSKFFTDLRDGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWK
440 450 460 470 480 490
550
pF1KE2 KSPEKNERHTC
:::::::::::
XP_016 KSPEKNERHTC
500
>>NP_001129124 (OMIM: 176871) interferon-induced, double (510 aa)
initn: 1703 init1: 1664 opt: 1664 Z-score: 526.9 bits: 107.2 E(85289): 1.3e-22
Smith-Waterman score: 3211; 92.6% identity (92.6% similar) in 551 aa overlap (1-551:1-510)
10 20 30 40 50 60
pF1KE2 MAGDLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAGDLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 KEAKNAAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KEAKNAAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 CASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEETSVKSDYLSSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEETSVKSDYLSSG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 SFATTCESQSNSLVTSTLASESSSEGDFSADTSEINSNSDSLNSSSLLMNGLRNNQRKAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SFATTCESQSNSLVTSTLASESSSEGDFSADTSEINSNSDSLNSSSLLMNGLRNNQRKAK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 RSLAPRFDLPDMKETKYTVDKRFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKY
::::::::::::::::::::::
NP_001 RSLAPRFDLPDMKETKYTVDKR--------------------------------------
250 260
310 320 330 340 350 360
pF1KE2 NNEKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSDDSLESSDYDPENSKNSSRSKTK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ---KAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSDDSLESSDYDPENSKNSSRSKTK
270 280 290 300 310
370 380 390 400 410 420
pF1KE2 CLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLIHRDLKPSNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLIHRDLKPSNI
320 330 340 350 360 370
430 440 450 460 470 480
pF1KE2 FLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAE
380 390 400 410 420 430
490 500 510 520 530 540
pF1KE2 LLHVCDTAFETSKFFTDLRDGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLHVCDTAFETSKFFTDLRDGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWK
440 450 460 470 480 490
550
pF1KE2 KSPEKNERHTC
:::::::::::
NP_001 KSPEKNERHTC
500 510
551 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 18:33:04 2016 done: Sun Nov 6 18:33:06 2016
Total Scan time: 10.350 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]