Result of FASTA (ccds) for
pFN21AE1209
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1209, 130 aa
1>>>pF1KE1209 130 - 130 aa - 130 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7993+/-0.000727; mu= 13.3417+/- 0.044
mean_var=56.1089+/-11.364, 0's: 0 Z-trim(109.0): 39 B-trim: 373 in 2/48
Lambda= 0.171222
statistics sampled from 10528 (10569) to 10528 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.711), E-opt: 0.2 (0.325), width: 16
Scan time: 1.680
The best scores are: opt bits E(32554)
CCDS1573.1 HIST3H2A gene_id:92815|Hs108|chr1 ( 130) 825 211.2 1.4e-55
CCDS4595.1 HIST1H2AE gene_id:3012|Hs108|chr6 ( 130) 822 210.5 2.4e-55
CCDS4574.1 HIST1H2AB gene_id:8335|Hs108|chr6 ( 130) 822 210.5 2.4e-55
CCDS4585.1 HIST1H2AC gene_id:8334|Hs108|chr6 ( 130) 821 210.2 2.8e-55
CCDS4591.1 HIST1H2AD gene_id:3013|Hs108|chr6 ( 130) 818 209.5 4.7e-55
CCDS30849.1 HIST2H2AA4 gene_id:723790|Hs108|chr1 ( 130) 815 208.8 7.9e-55
CCDS934.1 HIST2H2AA3 gene_id:8337|Hs108|chr1 ( 130) 815 208.8 7.9e-55
CCDS4619.1 HIST1H2AG gene_id:8969|Hs108|chr6 ( 130) 814 208.5 9.4e-55
CCDS4639.1 HIST1H2AM gene_id:8336|Hs108|chr6 ( 130) 814 208.5 9.4e-55
CCDS4632.1 HIST1H2AK gene_id:8330|Hs108|chr6 ( 130) 814 208.5 9.4e-55
CCDS4626.1 HIST1H2AI gene_id:8329|Hs108|chr6 ( 130) 814 208.5 9.4e-55
CCDS4634.1 HIST1H2AL gene_id:8332|Hs108|chr6 ( 130) 814 208.5 9.4e-55
CCDS4622.1 HIST1H2AH gene_id:85235|Hs108|chr6 ( 128) 800 205.0 1e-53
CCDS4628.1 HIST1H2AJ gene_id:8331|Hs108|chr6 ( 128) 795 203.8 2.4e-53
CCDS937.1 HIST2H2AC gene_id:8338|Hs108|chr1 ( 129) 785 201.3 1.3e-52
CCDS938.1 HIST2H2AB gene_id:317772|Hs108|chr1 ( 130) 780 200.1 3.2e-52
CCDS4562.1 HIST1H2AA gene_id:221613|Hs108|chr6 ( 131) 777 199.4 5.3e-52
CCDS31752.1 H2AFJ gene_id:55766|Hs108|chr12 ( 129) 768 197.1 2.5e-51
CCDS8410.1 H2AFX gene_id:3014|Hs108|chr11 ( 143) 735 189.0 7.6e-49
CCDS4184.1 H2AFY gene_id:9555|Hs108|chr5 ( 369) 496 130.2 9.8e-31
CCDS4183.1 H2AFY gene_id:9555|Hs108|chr5 ( 371) 496 130.2 9.9e-31
CCDS4185.1 H2AFY gene_id:9555|Hs108|chr5 ( 372) 496 130.2 9.9e-31
CCDS7296.1 H2AFY2 gene_id:55506|Hs108|chr10 ( 372) 486 127.8 5.5e-30
CCDS5496.1 H2AFV gene_id:94239|Hs108|chr7 ( 128) 459 120.8 2.3e-28
CCDS3654.1 H2AFZ gene_id:3015|Hs108|chr4 ( 128) 455 119.8 4.6e-28
CCDS5495.1 H2AFV gene_id:94239|Hs108|chr7 ( 114) 413 109.4 5.6e-25
CCDS5497.1 H2AFV gene_id:94239|Hs108|chr7 ( 102) 361 96.5 3.7e-21
CCDS35461.1 H2AFB2 gene_id:474381|Hs108|chrX ( 115) 298 81.0 2e-16
CCDS35464.1 H2AFB3 gene_id:83740|Hs108|chrX ( 115) 298 81.0 2e-16
CCDS35458.1 H2AFB1 gene_id:474382|Hs108|chrX ( 115) 289 78.8 9.3e-16
CCDS47581.1 H2AFV gene_id:94239|Hs108|chr7 ( 66) 244 67.5 1.3e-12
CCDS5498.1 H2AFV gene_id:94239|Hs108|chr7 ( 90) 221 61.9 8.7e-11
>>CCDS1573.1 HIST3H2A gene_id:92815|Hs108|chr1 (130 aa)
initn: 825 init1: 825 opt: 825 Z-score: 1111.2 bits: 211.2 E(32554): 1.4e-55
Smith-Waterman score: 825; 100.0% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KE1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KE1 TESHHKAKGK
::::::::::
CCDS15 TESHHKAKGK
130
>>CCDS4595.1 HIST1H2AE gene_id:3012|Hs108|chr6 (130 aa)
initn: 822 init1: 822 opt: 822 Z-score: 1107.2 bits: 210.5 E(32554): 2.4e-55
Smith-Waterman score: 822; 99.2% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KE1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT
::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::
CCDS45 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KE1 TESHHKAKGK
::::::::::
CCDS45 TESHHKAKGK
130
>>CCDS4574.1 HIST1H2AB gene_id:8335|Hs108|chr6 (130 aa)
initn: 822 init1: 822 opt: 822 Z-score: 1107.2 bits: 210.5 E(32554): 2.4e-55
Smith-Waterman score: 822; 99.2% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KE1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT
::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::
CCDS45 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KE1 TESHHKAKGK
::::::::::
CCDS45 TESHHKAKGK
130
>>CCDS4585.1 HIST1H2AC gene_id:8334|Hs108|chr6 (130 aa)
initn: 821 init1: 821 opt: 821 Z-score: 1105.8 bits: 210.2 E(32554): 2.8e-55
Smith-Waterman score: 821; 99.2% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KE1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT
::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::
CCDS45 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KE1 TESHHKAKGK
::::::::::
CCDS45 TESHHKAKGK
130
>>CCDS4591.1 HIST1H2AD gene_id:3013|Hs108|chr6 (130 aa)
initn: 818 init1: 818 opt: 818 Z-score: 1101.8 bits: 209.5 E(32554): 4.7e-55
Smith-Waterman score: 818; 98.5% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KE1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT
::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::
CCDS45 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
CCDS45 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KE1 TESHHKAKGK
::::::::::
CCDS45 TESHHKAKGK
130
>>CCDS30849.1 HIST2H2AA4 gene_id:723790|Hs108|chr1 (130 aa)
initn: 815 init1: 815 opt: 815 Z-score: 1097.8 bits: 208.8 E(32554): 7.9e-55
Smith-Waterman score: 815; 97.7% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KE1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT
::::::::::::::::::::::::::::::::::::::::.::::::::::.::::::::
CCDS30 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
CCDS30 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KE1 TESHHKAKGK
::::::::::
CCDS30 TESHHKAKGK
130
>>CCDS934.1 HIST2H2AA3 gene_id:8337|Hs108|chr1 (130 aa)
initn: 815 init1: 815 opt: 815 Z-score: 1097.8 bits: 208.8 E(32554): 7.9e-55
Smith-Waterman score: 815; 97.7% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KE1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT
::::::::::::::::::::::::::::::::::::::::.::::::::::.::::::::
CCDS93 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
CCDS93 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KE1 TESHHKAKGK
::::::::::
CCDS93 TESHHKAKGK
130
>>CCDS4619.1 HIST1H2AG gene_id:8969|Hs108|chr6 (130 aa)
initn: 814 init1: 814 opt: 814 Z-score: 1096.5 bits: 208.5 E(32554): 9.4e-55
Smith-Waterman score: 814; 97.7% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KE1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT
::::::::::::::::.:::::::::::::::::::::::.:::::::::::::::::::
CCDS46 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
CCDS46 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KE1 TESHHKAKGK
::::::::::
CCDS46 TESHHKAKGK
130
>>CCDS4639.1 HIST1H2AM gene_id:8336|Hs108|chr6 (130 aa)
initn: 814 init1: 814 opt: 814 Z-score: 1096.5 bits: 208.5 E(32554): 9.4e-55
Smith-Waterman score: 814; 97.7% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KE1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT
::::::::::::::::.:::::::::::::::::::::::.:::::::::::::::::::
CCDS46 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
CCDS46 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KE1 TESHHKAKGK
::::::::::
CCDS46 TESHHKAKGK
130
>>CCDS4632.1 HIST1H2AK gene_id:8330|Hs108|chr6 (130 aa)
initn: 814 init1: 814 opt: 814 Z-score: 1096.5 bits: 208.5 E(32554): 9.4e-55
Smith-Waterman score: 814; 97.7% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KE1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT
::::::::::::::::.:::::::::::::::::::::::.:::::::::::::::::::
CCDS46 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
CCDS46 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KE1 TESHHKAKGK
::::::::::
CCDS46 TESHHKAKGK
130
130 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 18:39:02 2016 done: Sun Nov 6 18:39:02 2016
Total Scan time: 1.680 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]