FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE0400, 366 aa 1>>>pF1KE0400 366 - 366 aa - 366 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7947+/-0.000711; mu= 13.9478+/- 0.042 mean_var=72.1478+/-14.412, 0's: 0 Z-trim(109.5): 35 B-trim: 0 in 0/51 Lambda= 0.150995 statistics sampled from 10910 (10940) to 10910 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.71), E-opt: 0.2 (0.336), width: 16 Scan time: 2.880 The best scores are: opt bits E(32554) CCDS1549.1 LEFTY2 gene_id:7044|Hs108|chr1 ( 366) 2522 558.3 3.7e-159 CCDS1548.1 LEFTY1 gene_id:10637|Hs108|chr1 ( 366) 2409 533.7 9.4e-152 CCDS53479.1 LEFTY2 gene_id:7044|Hs108|chr1 ( 332) 1672 373.2 1.8e-103 >>CCDS1549.1 LEFTY2 gene_id:7044|Hs108|chr1 (366 aa) initn: 2522 init1: 2522 opt: 2522 Z-score: 2971.0 bits: 558.3 E(32554): 3.7e-159 Smith-Waterman score: 2522; 100.0% identity (100.0% similar) in 366 aa overlap (1-366:1-366) 10 20 30 40 50 60 pF1KE0 MWPLWLCWALWVLPLAGPGAALTEEQLLGSLLRQLQLSEVPVLDRADMEKLVIPAHVRAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS15 MWPLWLCWALWVLPLAGPGAALTEEQLLGSLLRQLQLSEVPVLDRADMEKLVIPAHVRAQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE0 YVVLLRRSHGDRSRGKRFSQSFREVAGRFLASEASTHLLVFGMEQRLPPNSELVQAVLRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS15 YVVLLRRSHGDRSRGKRFSQSFREVAGRFLASEASTHLLVFGMEQRLPPNSELVQAVLRL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE0 FQEPVPKAALHRHGRLSPRSAQARVTVEWLRVRDDGSNRTSLIDSRLVSVHESGWKAFDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS15 FQEPVPKAALHRHGRLSPRSAQARVTVEWLRVRDDGSNRTSLIDSRLVSVHESGWKAFDV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE0 TEAVNFWQQLSRPRQPLLLQVSVQREHLGPLASGAHKLVRFASQGAPAGLGEPQLELHTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS15 TEAVNFWQQLSRPRQPLLLQVSVQREHLGPLASGAHKLVRFASQGAPAGLGEPQLELHTL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE0 DLRDYGAQGDCDPEAPMTEGTRCCRQEMYIDLQGMKWAKNWVLEPPGFLAYECVGTCQQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS15 DLRDYGAQGDCDPEAPMTEGTRCCRQEMYIDLQGMKWAKNWVLEPPGFLAYECVGTCQQP 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE0 PEALAFNWPFLGPRQCIASETASLPMIVSIKEGGRTRPQVVSLPNMRVQKCSCASDGALV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS15 PEALAFNWPFLGPRQCIASETASLPMIVSIKEGGRTRPQVVSLPNMRVQKCSCASDGALV 310 320 330 340 350 360 pF1KE0 PRRLQP :::::: CCDS15 PRRLQP >>CCDS1548.1 LEFTY1 gene_id:10637|Hs108|chr1 (366 aa) initn: 2409 init1: 2409 opt: 2409 Z-score: 2837.9 bits: 533.7 E(32554): 9.4e-152 Smith-Waterman score: 2409; 95.6% identity (98.6% similar) in 366 aa overlap (1-366:1-366) 10 20 30 40 50 60 pF1KE0 MWPLWLCWALWVLPLAGPGAALTEEQLLGSLLRQLQLSEVPVLDRADMEKLVIPAHVRAQ : ::::::::::::::.:::::: :::::::::::::.:::.:::::::.::::.::::: CCDS15 MQPLWLCWALWVLPLASPGAALTGEQLLGSLLRQLQLKEVPTLDRADMEELVIPTHVRAQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE0 YVVLLRRSHGDRSRGKRFSQSFREVAGRFLASEASTHLLVFGMEQRLPPNSELVQAVLRL ::.::.::::::::::::::::::::::::: :::::::::::::::::::::::::::: CCDS15 YVALLQRSHGDRSRGKRFSQSFREVAGRFLALEASTHLLVFGMEQRLPPNSELVQAVLRL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE0 FQEPVPKAALHRHGRLSPRSAQARVTVEWLRVRDDGSNRTSLIDSRLVSVHESGWKAFDV :::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::: CCDS15 FQEPVPKAALHRHGRLSPRSARARVTVEWLRVRDDGSNRTSLIDSRLVSVHESGWKAFDV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE0 TEAVNFWQQLSRPRQPLLLQVSVQREHLGPLASGAHKLVRFASQGAPAGLGEPQLELHTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS15 TEAVNFWQQLSRPRQPLLLQVSVQREHLGPLASGAHKLVRFASQGAPAGLGEPQLELHTL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE0 DLRDYGAQGDCDPEAPMTEGTRCCRQEMYIDLQGMKWAKNWVLEPPGFLAYECVGTCQQP :: :::::::::::::::::::::::::::::::::::.::::::::::::::::::.:: CCDS15 DLGDYGAQGDCDPEAPMTEGTRCCRQEMYIDLQGMKWAENWVLEPPGFLAYECVGTCRQP 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE0 PEALAFNWPFLGPRQCIASETASLPMIVSIKEGGRTRPQVVSLPNMRVQKCSCASDGALV ::::::.:::::::::::::: :::::::::::::::::::::::::::::::::::::: CCDS15 PEALAFKWPFLGPRQCIASETDSLPMIVSIKEGGRTRPQVVSLPNMRVQKCSCASDGALV 310 320 330 340 350 360 pF1KE0 PRRLQP :::::: CCDS15 PRRLQP >>CCDS53479.1 LEFTY2 gene_id:7044|Hs108|chr1 (332 aa) initn: 1672 init1: 1672 opt: 1672 Z-score: 1970.9 bits: 373.2 E(32554): 1.8e-103 Smith-Waterman score: 2222; 90.7% identity (90.7% similar) in 366 aa overlap (1-366:1-332) 10 20 30 40 50 60 pF1KE0 MWPLWLCWALWVLPLAGPGAALTEEQLLGSLLRQLQLSEVPVLDRADMEKLVIPAHVRAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 MWPLWLCWALWVLPLAGPGAALTEEQLLGSLLRQLQLSEVPVLDRADMEKLVIPAHVRAQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE0 YVVLLRRSHGDRSRGKRFSQSFREVAGRFLASEASTHLLVFGMEQRLPPNSELVQAVLRL :::::::::::::::::::::::::::::::::: CCDS53 YVVLLRRSHGDRSRGKRFSQSFREVAGRFLASEA-------------------------- 70 80 90 130 140 150 160 170 180 pF1KE0 FQEPVPKAALHRHGRLSPRSAQARVTVEWLRVRDDGSNRTSLIDSRLVSVHESGWKAFDV :::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 --------ALHRHGRLSPRSAQARVTVEWLRVRDDGSNRTSLIDSRLVSVHESGWKAFDV 100 110 120 130 140 190 200 210 220 230 240 pF1KE0 TEAVNFWQQLSRPRQPLLLQVSVQREHLGPLASGAHKLVRFASQGAPAGLGEPQLELHTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 TEAVNFWQQLSRPRQPLLLQVSVQREHLGPLASGAHKLVRFASQGAPAGLGEPQLELHTL 150 160 170 180 190 200 250 260 270 280 290 300 pF1KE0 DLRDYGAQGDCDPEAPMTEGTRCCRQEMYIDLQGMKWAKNWVLEPPGFLAYECVGTCQQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 DLRDYGAQGDCDPEAPMTEGTRCCRQEMYIDLQGMKWAKNWVLEPPGFLAYECVGTCQQP 210 220 230 240 250 260 310 320 330 340 350 360 pF1KE0 PEALAFNWPFLGPRQCIASETASLPMIVSIKEGGRTRPQVVSLPNMRVQKCSCASDGALV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 PEALAFNWPFLGPRQCIASETASLPMIVSIKEGGRTRPQVVSLPNMRVQKCSCASDGALV 270 280 290 300 310 320 pF1KE0 PRRLQP :::::: CCDS53 PRRLQP 330 366 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 08:02:41 2016 done: Sun Nov 6 08:02:42 2016 Total Scan time: 2.880 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]