FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5173, 169 aa 1>>>pF1KE5173 169 - 169 aa - 169 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.7473+/-0.000346; mu= 15.1093+/- 0.021 mean_var=58.1962+/-11.708, 0's: 0 Z-trim(113.5): 36 B-trim: 50 in 1/49 Lambda= 0.168123 statistics sampled from 22896 (22911) to 22896 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.269), width: 16 Scan time: 5.240 The best scores are: opt bits E(85289) NP_002992 (OMIM: 602413,605373,606764,606864) succ ( 169) 1140 284.5 5.7e-77 NP_001030589 (OMIM: 602413,605373,606764,606864) s ( 135) 748 189.3 2e-48 NP_001030590 (OMIM: 602413,605373,606764,606864) s ( 116) 731 185.2 3.1e-47 NP_001030588 (OMIM: 602413,605373,606764,606864) s ( 150) 559 143.5 1.4e-34 NP_001265101 (OMIM: 602413,605373,606764,606864) s ( 116) 208 58.3 4.7e-09 >>NP_002992 (OMIM: 602413,605373,606764,606864) succinat (169 aa) initn: 1140 init1: 1140 opt: 1140 Z-score: 1502.9 bits: 284.5 E(85289): 5.7e-77 Smith-Waterman score: 1140; 100.0% identity (100.0% similar) in 169 aa overlap (1-169:1-169) 10 20 30 40 50 60 pF1KE5 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 WSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 WSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFAL 70 80 90 100 110 120 130 140 150 160 pF1KE5 VFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM ::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 VFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM 130 140 150 160 >>NP_001030589 (OMIM: 602413,605373,606764,606864) succi (135 aa) initn: 748 init1: 748 opt: 748 Z-score: 990.4 bits: 189.3 E(85289): 2e-48 Smith-Waterman score: 833; 79.9% identity (79.9% similar) in 169 aa overlap (1-169:1-135) 10 20 30 40 50 60 pF1KE5 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS :::::::::::::::::::::::::: NP_001 MAALLLRHVGRHCLRAHFSPQLCIRN---------------------------------- 10 20 70 80 90 100 110 120 pF1KE5 WSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 WSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFAL 30 40 50 60 70 80 130 140 150 160 pF1KE5 VFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM ::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM 90 100 110 120 130 >>NP_001030590 (OMIM: 602413,605373,606764,606864) succi (116 aa) initn: 731 init1: 731 opt: 731 Z-score: 969.1 bits: 185.2 E(85289): 3.1e-47 Smith-Waterman score: 731; 98.2% identity (99.1% similar) in 112 aa overlap (58-169:5-116) 30 40 50 60 70 80 pF1KE5 VPLGTTAKEEMERFWNKNIGSNRPLSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGM . :::::::::::::::::::::::::::: NP_001 MAALLLSWSLPMAMSICHRGTGIALSAGVSLFGM 10 20 30 90 100 110 120 130 140 pF1KE5 SALLLPGNFESYLELVKSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SALLLPGNFESYLELVKSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQ 40 50 60 70 80 90 150 160 pF1KE5 LYQSGVVVLVLTVLSSMGLAAM :::::::::::::::::::::: NP_001 LYQSGVVVLVLTVLSSMGLAAM 100 110 >>NP_001030588 (OMIM: 602413,605373,606764,606864) succi (150 aa) initn: 559 init1: 559 opt: 559 Z-score: 742.0 bits: 143.5 E(85289): 1.4e-34 Smith-Waterman score: 559; 98.8% identity (98.8% similar) in 82 aa overlap (1-82:1-82) 10 20 30 40 50 60 pF1KE5 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 WSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFAL :::::::::::::::::::: : NP_001 WSLPMAMSICHRGTGIALSADVGPRKRPEDSPAIPVWSGCPGSYCVVLYGAGSHVKKGGS 70 80 90 100 110 120 >>NP_001265101 (OMIM: 602413,605373,606764,606864) succi (116 aa) initn: 338 init1: 186 opt: 208 Z-score: 283.5 bits: 58.3 E(85289): 4.7e-09 Smith-Waterman score: 252; 57.3% identity (57.3% similar) in 82 aa overlap (1-82:1-48) 10 20 30 40 50 60 pF1KE5 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS :::::::::::::::::::::::::: NP_001 MAALLLRHVGRHCLRAHFSPQLCIRN---------------------------------- 10 20 70 80 90 100 110 120 pF1KE5 WSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFAL :::::::::::::::::::: : NP_001 WSLPMAMSICHRGTGIALSADVGPRKRPEDSPAIPVWSGCPGSYCVVLYGAGSHVKKGGS 30 40 50 60 70 80 169 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:17:06 2016 done: Mon Nov 7 22:17:07 2016 Total Scan time: 5.240 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]