Result of FASTA (omim) for pFN21AE5173
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5173, 169 aa
  1>>>pF1KE5173 169 - 169 aa - 169 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7473+/-0.000346; mu= 15.1093+/- 0.021
 mean_var=58.1962+/-11.708, 0's: 0 Z-trim(113.5): 36  B-trim: 50 in 1/49
 Lambda= 0.168123
 statistics sampled from 22896 (22911) to 22896 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.269), width:  16
 Scan time:  5.240

The best scores are:                                      opt bits E(85289)
NP_002992 (OMIM: 602413,605373,606764,606864) succ ( 169) 1140 284.5 5.7e-77
NP_001030589 (OMIM: 602413,605373,606764,606864) s ( 135)  748 189.3   2e-48
NP_001030590 (OMIM: 602413,605373,606764,606864) s ( 116)  731 185.2 3.1e-47
NP_001030588 (OMIM: 602413,605373,606764,606864) s ( 150)  559 143.5 1.4e-34
NP_001265101 (OMIM: 602413,605373,606764,606864) s ( 116)  208 58.3 4.7e-09


>>NP_002992 (OMIM: 602413,605373,606764,606864) succinat  (169 aa)
 initn: 1140 init1: 1140 opt: 1140  Z-score: 1502.9  bits: 284.5 E(85289): 5.7e-77
Smith-Waterman score: 1140; 100.0% identity (100.0% similar) in 169 aa overlap (1-169:1-169)

               10        20        30        40        50        60
pF1KE5 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 WSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 WSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFAL
               70        80        90       100       110       120

              130       140       150       160         
pF1KE5 VFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM
       :::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 VFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM
              130       140       150       160         

>>NP_001030589 (OMIM: 602413,605373,606764,606864) succi  (135 aa)
 initn: 748 init1: 748 opt: 748  Z-score: 990.4  bits: 189.3 E(85289): 2e-48
Smith-Waterman score: 833; 79.9% identity (79.9% similar) in 169 aa overlap (1-169:1-135)

               10        20        30        40        50        60
pF1KE5 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS
       ::::::::::::::::::::::::::                                  
NP_001 MAALLLRHVGRHCLRAHFSPQLCIRN----------------------------------
               10        20                                        

               70        80        90       100       110       120
pF1KE5 WSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFAL
         30        40        50        60        70        80      

              130       140       150       160         
pF1KE5 VFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM
       :::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM
         90       100       110       120       130     

>>NP_001030590 (OMIM: 602413,605373,606764,606864) succi  (116 aa)
 initn: 731 init1: 731 opt: 731  Z-score: 969.1  bits: 185.2 E(85289): 3.1e-47
Smith-Waterman score: 731; 98.2% identity (99.1% similar) in 112 aa overlap (58-169:5-116)

        30        40        50        60        70        80       
pF1KE5 VPLGTTAKEEMERFWNKNIGSNRPLSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGM
                                     . ::::::::::::::::::::::::::::
NP_001                           MAALLLSWSLPMAMSICHRGTGIALSAGVSLFGM
                                         10        20        30    

        90       100       110       120       130       140       
pF1KE5 SALLLPGNFESYLELVKSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SALLLPGNFESYLELVKSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQ
           40        50        60        70        80        90    

       150       160         
pF1KE5 LYQSGVVVLVLTVLSSMGLAAM
       ::::::::::::::::::::::
NP_001 LYQSGVVVLVLTVLSSMGLAAM
          100       110      

>>NP_001030588 (OMIM: 602413,605373,606764,606864) succi  (150 aa)
 initn: 559 init1: 559 opt: 559  Z-score: 742.0  bits: 143.5 E(85289): 1.4e-34
Smith-Waterman score: 559; 98.8% identity (98.8% similar) in 82 aa overlap (1-82:1-82)

               10        20        30        40        50        60
pF1KE5 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 WSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFAL
       :::::::::::::::::::: :                                      
NP_001 WSLPMAMSICHRGTGIALSADVGPRKRPEDSPAIPVWSGCPGSYCVVLYGAGSHVKKGGS
               70        80        90       100       110       120

>>NP_001265101 (OMIM: 602413,605373,606764,606864) succi  (116 aa)
 initn: 338 init1: 186 opt: 208  Z-score: 283.5  bits: 58.3 E(85289): 4.7e-09
Smith-Waterman score: 252; 57.3% identity (57.3% similar) in 82 aa overlap (1-82:1-48)

               10        20        30        40        50        60
pF1KE5 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS
       ::::::::::::::::::::::::::                                  
NP_001 MAALLLRHVGRHCLRAHFSPQLCIRN----------------------------------
               10        20                                        

               70        80        90       100       110       120
pF1KE5 WSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFAL
       :::::::::::::::::::: :                                      
NP_001 WSLPMAMSICHRGTGIALSADVGPRKRPEDSPAIPVWSGCPGSYCVVLYGAGSHVKKGGS
         30        40        50        60        70        80      




169 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:17:06 2016 done: Mon Nov  7 22:17:07 2016
 Total Scan time:  5.240 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]
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