FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5173, 169 aa 1>>>pF1KE5173 169 - 169 aa - 169 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.7646+/-0.000755; mu= 14.9180+/- 0.045 mean_var=57.3619+/-11.460, 0's: 0 Z-trim(107.4): 14 B-trim: 14 in 1/50 Lambda= 0.169341 statistics sampled from 9518 (9526) to 9518 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.685), E-opt: 0.2 (0.293), width: 16 Scan time: 1.880 The best scores are: opt bits E(32554) CCDS1230.1 SDHC gene_id:6391|Hs108|chr1 ( 169) 1140 286.3 6.1e-78 CCDS44263.1 SDHC gene_id:6391|Hs108|chr1 ( 135) 748 190.5 3.4e-49 CCDS41432.1 SDHC gene_id:6391|Hs108|chr1 ( 116) 731 186.3 5.4e-48 CCDS41431.1 SDHC gene_id:6391|Hs108|chr1 ( 150) 559 144.3 3e-35 >>CCDS1230.1 SDHC gene_id:6391|Hs108|chr1 (169 aa) initn: 1140 init1: 1140 opt: 1140 Z-score: 1512.8 bits: 286.3 E(32554): 6.1e-78 Smith-Waterman score: 1140; 100.0% identity (100.0% similar) in 169 aa overlap (1-169:1-169) 10 20 30 40 50 60 pF1KE5 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 WSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 WSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFAL 70 80 90 100 110 120 130 140 150 160 pF1KE5 VFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM ::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 VFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM 130 140 150 160 >>CCDS44263.1 SDHC gene_id:6391|Hs108|chr1 (135 aa) initn: 748 init1: 748 opt: 748 Z-score: 996.6 bits: 190.5 E(32554): 3.4e-49 Smith-Waterman score: 833; 79.9% identity (79.9% similar) in 169 aa overlap (1-169:1-135) 10 20 30 40 50 60 pF1KE5 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS :::::::::::::::::::::::::: CCDS44 MAALLLRHVGRHCLRAHFSPQLCIRN---------------------------------- 10 20 70 80 90 100 110 120 pF1KE5 WSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 WSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFAL 30 40 50 60 70 80 130 140 150 160 pF1KE5 VFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM ::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 VFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM 90 100 110 120 130 >>CCDS41432.1 SDHC gene_id:6391|Hs108|chr1 (116 aa) initn: 731 init1: 731 opt: 731 Z-score: 975.2 bits: 186.3 E(32554): 5.4e-48 Smith-Waterman score: 731; 98.2% identity (99.1% similar) in 112 aa overlap (58-169:5-116) 30 40 50 60 70 80 pF1KE5 VPLGTTAKEEMERFWNKNIGSNRPLSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGM . :::::::::::::::::::::::::::: CCDS41 MAALLLSWSLPMAMSICHRGTGIALSAGVSLFGM 10 20 30 90 100 110 120 130 140 pF1KE5 SALLLPGNFESYLELVKSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 SALLLPGNFESYLELVKSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQ 40 50 60 70 80 90 150 160 pF1KE5 LYQSGVVVLVLTVLSSMGLAAM :::::::::::::::::::::: CCDS41 LYQSGVVVLVLTVLSSMGLAAM 100 110 >>CCDS41431.1 SDHC gene_id:6391|Hs108|chr1 (150 aa) initn: 559 init1: 559 opt: 559 Z-score: 746.4 bits: 144.3 E(32554): 3e-35 Smith-Waterman score: 559; 98.8% identity (98.8% similar) in 82 aa overlap (1-82:1-82) 10 20 30 40 50 60 pF1KE5 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 WSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFAL :::::::::::::::::::: : CCDS41 WSLPMAMSICHRGTGIALSADVGPRKRPEDSPAIPVWSGCPGSYCVVLYGAGSHVKKGGS 70 80 90 100 110 120 169 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:17:05 2016 done: Mon Nov 7 22:17:06 2016 Total Scan time: 1.880 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]