Result of FASTA (omim) for
pFN21AE2353
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2353, 333 aa
1>>>pF1KE2353 333 - 333 aa - 333 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.6612+/-0.000375; mu= 19.9553+/- 0.023
mean_var=73.9568+/-15.227, 0's: 0 Z-trim(114.0): 174 B-trim: 1438 in 1/53
Lambda= 0.149137
statistics sampled from 23418 (23613) to 23418 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.649), E-opt: 0.2 (0.277), width: 16
Scan time: 6.730
The best scores are: opt bits E(85289)
NP_001756 (OMIM: 188340) T-cell surface glycoprote ( 333) 2312 506.8 2.6e-143
XP_005245636 (OMIM: 188340) PREDICTED: T-cell surf ( 346) 2066 453.9 2.3e-127
NP_001755 (OMIM: 188360) T-cell surface glycoprote ( 333) 1364 302.8 6.7e-82
NP_001754 (OMIM: 188370) T-cell surface glycoprote ( 327) 1323 294.0 3e-79
NP_001307581 (OMIM: 188370) T-cell surface glycopr ( 316) 1264 281.3 1.9e-75
NP_112155 (OMIM: 188411) T-cell surface glycoprote ( 388) 1174 262.0 1.5e-69
NP_001036048 (OMIM: 188411) T-cell surface glycopr ( 376) 1158 258.5 1.6e-68
NP_001757 (OMIM: 188410) antigen-presenting glycop ( 335) 1098 245.6 1.1e-64
XP_011508427 (OMIM: 188410) PREDICTED: antigen-pre ( 335) 1098 245.6 1.1e-64
XP_011508421 (OMIM: 188360) PREDICTED: T-cell surf ( 278) 1019 228.5 1.3e-59
NP_001036049 (OMIM: 188411) T-cell surface glycopr ( 290) 953 214.3 2.5e-55
XP_011508436 (OMIM: 188411) PREDICTED: T-cell surf ( 290) 953 214.3 2.5e-55
NP_001172043 (OMIM: 188411) T-cell surface glycopr ( 289) 852 192.6 8.8e-49
XP_006711684 (OMIM: 188410) PREDICTED: antigen-pre ( 231) 836 189.0 8.1e-48
XP_005245640 (OMIM: 188410) PREDICTED: antigen-pre ( 231) 836 189.0 8.1e-48
XP_011508429 (OMIM: 188410) PREDICTED: antigen-pre ( 231) 836 189.0 8.1e-48
NP_001036050 (OMIM: 188411) T-cell surface glycopr ( 321) 828 187.5 3.4e-47
XP_011508435 (OMIM: 188411) PREDICTED: T-cell surf ( 333) 828 187.5 3.5e-47
XP_016858273 (OMIM: 188360) PREDICTED: T-cell surf ( 269) 784 177.9 2.1e-44
XP_016858275 (OMIM: 188360) PREDICTED: T-cell surf ( 220) 783 177.6 2.1e-44
XP_016858274 (OMIM: 188360) PREDICTED: T-cell surf ( 239) 782 177.4 2.6e-44
NP_001172041 (OMIM: 188411) T-cell surface glycopr ( 199) 558 129.2 7.4e-30
NP_001172036 (OMIM: 188411) T-cell surface glycopr ( 298) 555 128.7 1.5e-29
NP_001036051 (OMIM: 188411) T-cell surface glycopr ( 187) 542 125.7 7.7e-29
NP_001172044 (OMIM: 188411) T-cell surface glycopr ( 286) 539 125.2 1.6e-28
NP_001306074 (OMIM: 188410) antigen-presenting gly ( 242) 536 124.5 2.3e-28
NP_001036052 (OMIM: 188411) T-cell surface glycopr ( 101) 337 81.3 9.6e-16
NP_001172037 (OMIM: 188411) T-cell surface glycopr ( 231) 327 79.5 7.6e-15
NP_001522 (OMIM: 600764) major histocompatibility ( 341) 295 72.8 1.2e-12
XP_011507765 (OMIM: 600764) PREDICTED: major histo ( 254) 280 69.5 8.9e-12
NP_001287678 (OMIM: 104300,176100,176200,235200,61 ( 337) 277 68.9 1.7e-11
NP_620578 (OMIM: 104300,176100,176200,235200,61263 ( 325) 276 68.7 1.9e-11
XP_011512845 (OMIM: 104300,176100,176200,235200,61 ( 348) 276 68.7 2e-11
NP_000401 (OMIM: 104300,176100,176200,235200,61263 ( 348) 276 68.7 2e-11
NP_001176 (OMIM: 194460) zinc-alpha-2-glycoprotein ( 298) 272 67.8 3.3e-11
NP_002118 (OMIM: 142871,600807) HLA class I histoc ( 338) 268 67.0 6.5e-11
XP_016866305 (OMIM: 142871,600807) PREDICTED: HLA ( 343) 268 67.0 6.6e-11
NP_620576 (OMIM: 104300,176100,176200,235200,61263 ( 260) 257 64.5 2.8e-10
XP_016866300 (OMIM: 143110) PREDICTED: HLA class I ( 431) 258 65.0 3.4e-10
XP_016866304 (OMIM: 143110) PREDICTED: HLA class I ( 228) 250 62.9 7.3e-10
XP_011512866 (OMIM: 143110) PREDICTED: HLA class I ( 343) 251 63.3 8.3e-10
NP_061823 (OMIM: 143110) HLA class I histocompatib ( 346) 251 63.3 8.4e-10
XP_016866302 (OMIM: 143110) PREDICTED: HLA class I ( 388) 251 63.4 9.1e-10
XP_016866303 (OMIM: 143110) PREDICTED: HLA class I ( 324) 250 63.1 9.3e-10
XP_016866301 (OMIM: 143110) PREDICTED: HLA class I ( 420) 251 63.4 9.6e-10
XP_016866299 (OMIM: 143110) PREDICTED: HLA class I ( 435) 251 63.4 9.8e-10
NP_001091949 (OMIM: 143110) HLA class I histocompa ( 442) 251 63.5 9.9e-10
NP_001170990 (OMIM: 600169) MHC class I polypeptid ( 332) 244 61.8 2.3e-09
NP_000238 (OMIM: 600169) MHC class I polypeptide-r ( 383) 243 61.7 3e-09
NP_002107 (OMIM: 142800,608579) HLA class I histoc ( 365) 239 60.8 5.2e-09
>>NP_001756 (OMIM: 188340) T-cell surface glycoprotein C (333 aa)
initn: 2312 init1: 2312 opt: 2312 Z-score: 2693.8 bits: 506.8 E(85289): 2.6e-143
Smith-Waterman score: 2312; 100.0% identity (100.0% similar) in 333 aa overlap (1-333:1-333)
10 20 30 40 50 60
pF1KE2 MLFLQFLLLALLLPGGDNADASQEHVSFHVIQIFSFVNQSWARGQGSGWLDELQTHGWDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLFLQFLLLALLLPGGDNADASQEHVSFHVIQIFSFVNQSWARGQGSGWLDELQTHGWDS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 ESGTIIFLHNWSKGNFSNEELSDLELLFRFYLFGLTREIQDHASQDYSKYPFEVQVKAGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ESGTIIFLHNWSKGNFSNEELSDLELLFRFYLFGLTREIQDHASQDYSKYPFEVQVKAGC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 ELHSGKSPEGFFQVAFNGLDLLSFQNTTWVPSPGCGSLAQSVCHLLNHQYEGVTETVYNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELHSGKSPEGFFQVAFNGLDLLSFQNTTWVPSPGCGSLAQSVCHLLNHQYEGVTETVYNL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 IRSTCPRFLLGLLDAGKMYVHRQVRPEAWLSSRPSLGSGQLLLVCHASGFYPKPVWVTWM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IRSTCPRFLLGLLDAGKMYVHRQVRPEAWLSSRPSLGSGQLLLVCHASGFYPKPVWVTWM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 RNEQEQLGTKHGDILPNADGTWYLQVILEVASEEPAGLSCRVRHSSLGGQDIILYWGHHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RNEQEQLGTKHGDILPNADGTWYLQVILEVASEEPAGLSCRVRHSSLGGQDIILYWGHHF
250 260 270 280 290 300
310 320 330
pF1KE2 SMNWIALVVIVPLVILIVLVLWFKKHCSYQDIL
:::::::::::::::::::::::::::::::::
NP_001 SMNWIALVVIVPLVILIVLVLWFKKHCSYQDIL
310 320 330
>>XP_005245636 (OMIM: 188340) PREDICTED: T-cell surface (346 aa)
initn: 2066 init1: 2066 opt: 2066 Z-score: 2407.5 bits: 453.9 E(85289): 2.3e-127
Smith-Waterman score: 2066; 99.7% identity (100.0% similar) in 298 aa overlap (1-298:1-298)
10 20 30 40 50 60
pF1KE2 MLFLQFLLLALLLPGGDNADASQEHVSFHVIQIFSFVNQSWARGQGSGWLDELQTHGWDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MLFLQFLLLALLLPGGDNADASQEHVSFHVIQIFSFVNQSWARGQGSGWLDELQTHGWDS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 ESGTIIFLHNWSKGNFSNEELSDLELLFRFYLFGLTREIQDHASQDYSKYPFEVQVKAGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ESGTIIFLHNWSKGNFSNEELSDLELLFRFYLFGLTREIQDHASQDYSKYPFEVQVKAGC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 ELHSGKSPEGFFQVAFNGLDLLSFQNTTWVPSPGCGSLAQSVCHLLNHQYEGVTETVYNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ELHSGKSPEGFFQVAFNGLDLLSFQNTTWVPSPGCGSLAQSVCHLLNHQYEGVTETVYNL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 IRSTCPRFLLGLLDAGKMYVHRQVRPEAWLSSRPSLGSGQLLLVCHASGFYPKPVWVTWM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IRSTCPRFLLGLLDAGKMYVHRQVRPEAWLSSRPSLGSGQLLLVCHASGFYPKPVWVTWM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 RNEQEQLGTKHGDILPNADGTWYLQVILEVASEEPAGLSCRVRHSSLGGQDIILYWGHHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:
XP_005 RNEQEQLGTKHGDILPNADGTWYLQVILEVASEEPAGLSCRVRHSSLGGQDIILYWAHIR
250 260 270 280 290 300
310 320 330
pF1KE2 SMNWIALVVIVPLVILIVLVLWFKKHCSYQDIL
XP_005 TSCETLPPDSPIVLRTQQPRSLVQYSDAIPSTLHLNCFSFCIINIC
310 320 330 340
>>NP_001755 (OMIM: 188360) T-cell surface glycoprotein C (333 aa)
initn: 1318 init1: 676 opt: 1364 Z-score: 1591.4 bits: 302.8 E(85289): 6.7e-82
Smith-Waterman score: 1364; 60.4% identity (81.7% similar) in 333 aa overlap (1-332:1-332)
10 20 30 40 50 60
pF1KE2 MLFLQFLLLALLLPGGDNADASQEHVSFHVIQIFSFVNQSWARGQGSGWLDELQTHGWDS
::.: : :::.:.:::.. : : .:::::: ::.:..::. :::::::.:: :::::
NP_001 MLLLPFQLLAVLFPGGNSEHAFQGPTSFHVIQTSSFTNSTWAQTQGSGWLDDLQIHGWDS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 ESGTIIFLHNWSKGNFSNEELSDLELLFRFYLFGLTREIQDHASQDYSKYPFEVQVKAGC
.::: :::. :::::::..:...:: .:: :.::..::.:: :.. :::::.: :::
NP_001 DSGTAIFLKPWSKGNFSDKEVAELEEIFRVYIFGFAREVQDFAGDFQMKYPFEIQGIAGC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 ELHSGKSPEGFFQVAFNGLDLLSFQNTTWVPSPGCGSLAQSVCHLLNHQYEGVTETVYNL
::::: . .:.. :..:::.:: .:.. :::: :: ::. : :. ::.:. ::: :
NP_001 ELHSGGAIVSFLRGALGGLDFLSVKNASCVPSPEGGSRAQKFCALII-QYQGIMETVRIL
130 140 150 160 170
190 200 210 220 230 240
pF1KE2 IRSTCPRFLLGLLDAGKMYVHRQVRPEAWLSSRPSLGSGQLLLVCHASGFYPKPVWVTWM
. ::::.:::.:.::: ..:::.::::::: :: : :.: ::::.:::::::::: ::
NP_001 LYETCPRYLLGVLNAGKADLQRQVKPEAWLSSGPSPGPGRLQLVCHVSGFYPKPVWVMWM
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE2 RNEQEQLGTKHGDILPNADGTWYLQVILEVASEEPAGLSCRVRHSSLGGQDIILYWGHHF
:.:::: ::. :::::::. ::::.. :.::. : :::::::.:::: :::::::: .
NP_001 RGEQEQQGTQLGDILPNANWTWYLRATLDVADGEAAGLSCRVKHSSLEGQDIILYWRNPT
240 250 260 270 280 290
310 320 330
pF1KE2 SMNWIALVVIVP-LVILIVLVLWFKKHCSYQDIL
:.. :.:..::: :..:. :.::. .. :::.:
NP_001 SIGSIVLAIIVPSLLLLLCLALWYMRRRSYQNIP
300 310 320 330
>>NP_001754 (OMIM: 188370) T-cell surface glycoprotein C (327 aa)
initn: 1343 init1: 748 opt: 1323 Z-score: 1543.8 bits: 294.0 E(85289): 3e-79
Smith-Waterman score: 1323; 58.7% identity (80.7% similar) in 327 aa overlap (1-327:1-325)
10 20 30 40 50 60
pF1KE2 MLFLQFLLLALLLPGGDNADASQEHVSFHVIQIFSFVNQSWARGQGSGWLDELQTHGWDS
:::: . :::.: :: :::. .: .:::: : :: :.:: .. ::::..:::: :::
NP_001 MLFLLLPLLAVL-PGDGNADGLKEPLSFHVTWIASFYNHSWKQNLVSGWLSDLQTHTWDS
10 20 30 40 50
70 80 90 100 110 120
pF1KE2 ESGTIIFLHNWSKGNFSNEELSDLELLFRFYLFGLTREIQDHASQDYSKYPFEVQVKAGC
.:.::.:: ::.::::::: ..:: :::. . . :. .: . .::::.:: .::
NP_001 NSSTIVFLCPWSRGNFSNEEWKELETLFRIRTIRSFEGIRRYAHELQFEYPFEIQVTGGC
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE2 ELHSGKSPEGFFQVAFNGLDLLSFQNTTWVPSPGCGSLAQSVCHLLNHQYEGVTETVYNL
:::::: .:.:.:..: :..::::..:.: : :..:. :..:: : . .. ..::
NP_001 ELHSGKVSGSFLQLAYQGSDFVSFQNNSWLPYPVAGNMAKHFCKVLN-QNQHENDITHNL
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE2 IRSTCPRFLLGLLDAGKMYVHRQVRPEAWLSSRPSLGSGQLLLVCHASGFYPKPVWVTWM
. .:::::.:::::::: ...:::.:::::: :: : :.: ::::.:::::::::: ::
NP_001 LSDTCPRFILGLLDAGKAHLQRQVKPEAWLSHGPSPGPGHLQLVCHVSGFYPKPVWVMWM
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE2 RNEQEQLGTKHGDILPNADGTWYLQVILEVASEEPAGLSCRVRHSSLGGQDIILYWGHHF
:.:::: ::..:::::.:::::::.. ::::. : : :::::.:::: ::::.::: ::
NP_001 RGEQEQQGTQRGDILPSADGTWYLRATLEVAAGEAADLSCRVKHSSLEGQDIVLYWEHHS
240 250 260 270 280 290
310 320 330
pF1KE2 SMNWIALVVIVPLVILIVLVLWFKKHCSYQDIL
:...: :.:::::..:: :.:::.:.:
NP_001 SVGFIILAVIVPLLLLIGLALWFRKRCFC
300 310 320
>>NP_001307581 (OMIM: 188370) T-cell surface glycoprotei (316 aa)
initn: 1271 init1: 748 opt: 1264 Z-score: 1475.4 bits: 281.3 E(85289): 1.9e-75
Smith-Waterman score: 1264; 58.1% identity (80.5% similar) in 313 aa overlap (15-327:5-314)
10 20 30 40 50 60
pF1KE2 MLFLQFLLLALLLPGGDNADASQEHVSFHVIQIFSFVNQSWARGQGSGWLDELQTHGWDS
:: : . .: .:::: : :: :.:: .. ::::..:::: :::
NP_001 MFAFGG--ATGLKEPLSFHVTWIASFYNHSWKQNLVSGWLSDLQTHTWDS
10 20 30 40
70 80 90 100 110 120
pF1KE2 ESGTIIFLHNWSKGNFSNEELSDLELLFRFYLFGLTREIQDHASQDYSKYPFEVQVKAGC
.:.::.:: ::.::::::: ..:: :::. . . :. .: . .::::.:: .::
NP_001 NSSTIVFLCPWSRGNFSNEEWKELETLFRIRTIRSFEGIRRYAHELQFEYPFEIQVTGGC
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE2 ELHSGKSPEGFFQVAFNGLDLLSFQNTTWVPSPGCGSLAQSVCHLLNHQYEGVTETVYNL
:::::: .:.:.:..: :..::::..:.: : :..:. :..:: : . .. ..::
NP_001 ELHSGKVSGSFLQLAYQGSDFVSFQNNSWLPYPVAGNMAKHFCKVLN-QNQHENDITHNL
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE2 IRSTCPRFLLGLLDAGKMYVHRQVRPEAWLSSRPSLGSGQLLLVCHASGFYPKPVWVTWM
. .:::::.:::::::: ...:::.:::::: :: : :.: ::::.:::::::::: ::
NP_001 LSDTCPRFILGLLDAGKAHLQRQVKPEAWLSHGPSPGPGHLQLVCHVSGFYPKPVWVMWM
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE2 RNEQEQLGTKHGDILPNADGTWYLQVILEVASEEPAGLSCRVRHSSLGGQDIILYWGHHF
:.:::: ::..:::::.:::::::.. ::::. : : :::::.:::: ::::.::: ::
NP_001 RGEQEQQGTQRGDILPSADGTWYLRATLEVAAGEAADLSCRVKHSSLEGQDIVLYWEHHS
230 240 250 260 270 280
310 320 330
pF1KE2 SMNWIALVVIVPLVILIVLVLWFKKHCSYQDIL
:...: :.:::::..:: :.:::.:.:
NP_001 SVGFIILAVIVPLLLLIGLALWFRKRCFC
290 300 310
>>NP_112155 (OMIM: 188411) T-cell surface glycoprotein C (388 aa)
initn: 992 init1: 601 opt: 1174 Z-score: 1369.6 bits: 262.0 E(85289): 1.5e-69
Smith-Waterman score: 1174; 51.0% identity (77.8% similar) in 343 aa overlap (1-333:1-339)
10 20 30 40 50
pF1KE2 MLFLQFLLLALLLPGGDNAD---------ASQEHVSFHVIQIFSFVNQSWARGQGSGWLD
::.: .:. .: :: ..: :..:..::...: ::.:.:::...:::::
NP_112 MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE2 ELQTHGWDSESGTIIFLHNWSKGNFSNEELSDLELLFRFYLFGLTREIQDHASQDYSKYP
.:::::::. ::: ::. ::.::::..::..:. ::..:. .. . .: :.: .::
NP_112 DLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIQIVQASAGQFQLEYP
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE2 FEVQVKAGCELHSGKSPEGFFQVAFNGLDLLSFQNTTWVPSPGCGSLAQSVCHLLNHQYE
::.:. :::.... :. :...:..: :.::::. .: :::: : ::..:..:: .:
NP_112 FEIQILAGCRMNA---PQIFLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLN-RYL
130 140 150 160 170
180 190 200 210 220 230
pF1KE2 GVTETVYNLIRSTCPRFLLGLLDAGKMYVHRQVRPEAWLSSRPSLGSGQLLLVCHASGFY
. : . .:. :::::: ::..::. ..:.:.:::::: :: : :.: ::::.::::
NP_112 DIKEILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFY
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE2 PKPVWVTWMRNEQEQLGTKHGDILPNADGTWYLQVILEVASEEPAGLSCRVRHSSLGGQD
:::::: :::.:::: ::..::.::::: ::::.. :.::. : :::::::.::::::.:
NP_112 PKPVWVMWMRGEQEQRGTQRGDVLPNADETWYLRATLDVAAGEAAGLSCRVKHSSLGGHD
240 250 260 270 280 290
300 310 320 330
pF1KE2 IILYWG-HHFSMNWIALVVIVPLVILIVLVLWFKKHCSYQDIL
.:..:: . . . : :.::: ::::.:. .::. : ..::
NP_112 LIIHWGGYSIFLILICLTVIVTLVILVVVDSRLKKQSSNKNILSPHTPSPVFLMGANTQD
300 310 320 330 340 350
NP_112 TKNSRHQFCLAQVSWIKNRVLKKWKTRLNQLW
360 370 380
>>NP_001036048 (OMIM: 188411) T-cell surface glycoprotei (376 aa)
initn: 992 init1: 601 opt: 1158 Z-score: 1351.2 bits: 258.5 E(85289): 1.6e-68
Smith-Waterman score: 1158; 51.2% identity (78.0% similar) in 336 aa overlap (1-326:1-332)
10 20 30 40 50
pF1KE2 MLFLQFLLLALLLPGGDNAD---------ASQEHVSFHVIQIFSFVNQSWARGQGSGWLD
::.: .:. .: :: ..: :..:..::...: ::.:.:::...:::::
NP_001 MLLLFLLFEGLCCPGENTAAPQALQSYHLAAEEQLSFRMLQTSSFANHSWAHSEGSGWLG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE2 ELQTHGWDSESGTIIFLHNWSKGNFSNEELSDLELLFRFYLFGLTREIQDHASQDYSKYP
.:::::::. ::: ::. ::.::::..::..:. ::..:. .. . .: :.: .::
NP_001 DLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIQIVQASAGQFQLEYP
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE2 FEVQVKAGCELHSGKSPEGFFQVAFNGLDLLSFQNTTWVPSPGCGSLAQSVCHLLNHQYE
::.:. :::.... :. :...:..: :.::::. .: :::: : ::..:..:: .:
NP_001 FEIQILAGCRMNA---PQIFLNMAYQGSDFLSFQGISWEPSPGAGIRAQNICKVLN-RYL
130 140 150 160 170
180 190 200 210 220 230
pF1KE2 GVTETVYNLIRSTCPRFLLGLLDAGKMYVHRQVRPEAWLSSRPSLGSGQLLLVCHASGFY
. : . .:. :::::: ::..::. ..:.:.:::::: :: : :.: ::::.::::
NP_001 DIKEILQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFY
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE2 PKPVWVTWMRNEQEQLGTKHGDILPNADGTWYLQVILEVASEEPAGLSCRVRHSSLGGQD
:::::: :::.:::: ::..::.::::: ::::.. :.::. : :::::::.::::::.:
NP_001 PKPVWVMWMRGEQEQRGTQRGDVLPNADETWYLRATLDVAAGEAAGLSCRVKHSSLGGHD
240 250 260 270 280 290
300 310 320 330
pF1KE2 IILYWG-HHFSMNWIALVVIVPLVILIVLVLWFKKHCSYQDIL
.:..:: . . . : :.::: ::::.:. .::.
NP_001 LIIHWGGYSIFLILICLTVIVTLVILVVVDSRLKKQSPVFLMGANTQDTKNSRHQFCLAQ
300 310 320 330 340 350
NP_001 VSWIKNRVLKKWKTRLNQLW
360 370
>>NP_001757 (OMIM: 188410) antigen-presenting glycoprote (335 aa)
initn: 1098 init1: 599 opt: 1098 Z-score: 1282.1 bits: 245.6 E(85289): 1.1e-64
Smith-Waterman score: 1098; 49.7% identity (77.1% similar) in 336 aa overlap (1-333:1-335)
10 20 30 40 50 60
pF1KE2 MLFLQFLLLALLLPGGDNADASQEHVSFHVIQIFSFVNQSWARGQGSGWLDELQTHGWDS
: : :::: :: . .:.. :. .. .:: ::.:.::.: .: .:: :::::.:..
NP_001 MGCLLFLLLWALLQAWGSAEVPQRLFPLRCLQISSFANSSWTRTDGLAWLGELQTHSWSN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 ESGTIIFLHNWSKGNFSNEELSDLELLFRFYLFGLTREIQDHASQDYSKYPFEVQVKAGC
.: :. :. ::.:.::... :. .:: : ..::.... :.. .::.:.::.:::
NP_001 DSDTVRSLKPWSQGTFSDQQWETLQHIFRVYRSSFTRDVKEFAKMLRLSYPLELQVSAGC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 ELHSGKSPEGFFQVAFNGLDLLSFQNTTWVPSPGCGSLAQSVCHLLNHQYEGVTETVYNL
:.: :.. ..::.:::.: :.::::.:.: :. .. . ..:: : . . ::: :
NP_001 EVHPGNASNNFFHVAFQGKDILSFQGTSWEPTQEAPLWVNLAIQVLN-QDKWTRETVQWL
130 140 150 160 170
190 200 210 220 230 240
pF1KE2 IRSTCPRFLLGLLDAGKMYVHRQVRPEAWLSSRPSLGSGQLLLVCHASGFYPKPVWVTWM
. .:::.:. :::..:: ...::.:.:::: :: : :.::::::.:::::::::: ::
NP_001 LNGTCPQFVSGLLESGKSELKKQVKPKAWLSRGPSPGPGRLLLVCHVSGFYPKPVWVKWM
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE2 RNEQEQLGTKHGDILPNADGTWYLQVILEVASEEPAGLSCRVRHSSLGGQDIILYWGHHF
:.:::: ::. :::::::: ::::.. :.:.. : :::::::.:::: ::::.:::: .
NP_001 RGEQEQQGTQPGDILPNADETWYLRATLDVVAGEAAGLSCRVKHSSLEGQDIVLYWGGSY
240 250 260 270 280 290
310 320 330
pF1KE2 -SMNWIALVVIVPLVILIVLVLW--FKKHCSYQDIL
::. :::.:.. :..:... . ::.. ::: .:
NP_001 TSMGLIALAVLACLLFLLIVGFTSRFKRQTSYQGVL
300 310 320 330
>>XP_011508427 (OMIM: 188410) PREDICTED: antigen-present (335 aa)
initn: 1098 init1: 599 opt: 1098 Z-score: 1282.1 bits: 245.6 E(85289): 1.1e-64
Smith-Waterman score: 1098; 49.7% identity (77.1% similar) in 336 aa overlap (1-333:1-335)
10 20 30 40 50 60
pF1KE2 MLFLQFLLLALLLPGGDNADASQEHVSFHVIQIFSFVNQSWARGQGSGWLDELQTHGWDS
: : :::: :: . .:.. :. .. .:: ::.:.::.: .: .:: :::::.:..
XP_011 MGCLLFLLLWALLQAWGSAEVPQRLFPLRCLQISSFANSSWTRTDGLAWLGELQTHSWSN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 ESGTIIFLHNWSKGNFSNEELSDLELLFRFYLFGLTREIQDHASQDYSKYPFEVQVKAGC
.: :. :. ::.:.::... :. .:: : ..::.... :.. .::.:.::.:::
XP_011 DSDTVRSLKPWSQGTFSDQQWETLQHIFRVYRSSFTRDVKEFAKMLRLSYPLELQVSAGC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 ELHSGKSPEGFFQVAFNGLDLLSFQNTTWVPSPGCGSLAQSVCHLLNHQYEGVTETVYNL
:.: :.. ..::.:::.: :.::::.:.: :. .. . ..:: : . . ::: :
XP_011 EVHPGNASNNFFHVAFQGKDILSFQGTSWEPTQEAPLWVNLAIQVLN-QDKWTRETVQWL
130 140 150 160 170
190 200 210 220 230 240
pF1KE2 IRSTCPRFLLGLLDAGKMYVHRQVRPEAWLSSRPSLGSGQLLLVCHASGFYPKPVWVTWM
. .:::.:. :::..:: ...::.:.:::: :: : :.::::::.:::::::::: ::
XP_011 LNGTCPQFVSGLLESGKSELKKQVKPKAWLSRGPSPGPGRLLLVCHVSGFYPKPVWVKWM
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE2 RNEQEQLGTKHGDILPNADGTWYLQVILEVASEEPAGLSCRVRHSSLGGQDIILYWGHHF
:.:::: ::. :::::::: ::::.. :.:.. : :::::::.:::: ::::.:::: .
XP_011 RGEQEQQGTQPGDILPNADETWYLRATLDVVAGEAAGLSCRVKHSSLEGQDIVLYWGGSY
240 250 260 270 280 290
310 320 330
pF1KE2 -SMNWIALVVIVPLVILIVLVLW--FKKHCSYQDIL
::. :::.:.. :..:... . ::.. ::: .:
XP_011 TSMGLIALAVLACLLFLLIVGFTSRFKRQTSYQGVL
300 310 320 330
>>XP_011508421 (OMIM: 188360) PREDICTED: T-cell surface (278 aa)
initn: 1097 init1: 656 opt: 1019 Z-score: 1191.2 bits: 228.5 E(85289): 1.3e-59
Smith-Waterman score: 1019; 59.0% identity (80.7% similar) in 249 aa overlap (1-249:1-248)
10 20 30 40 50 60
pF1KE2 MLFLQFLLLALLLPGGDNADASQEHVSFHVIQIFSFVNQSWARGQGSGWLDELQTHGWDS
::.: : :::.:.:::.. : : .:::::: ::.:..::. :::::::.:: :::::
XP_011 MLLLPFQLLAVLFPGGNSEHAFQGPTSFHVIQTSSFTNSTWAQTQGSGWLDDLQIHGWDS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 ESGTIIFLHNWSKGNFSNEELSDLELLFRFYLFGLTREIQDHASQDYSKYPFEVQVKAGC
.::: :::. :::::::..:...:: .:: :.::..::.:: :.. :::::.: :::
XP_011 DSGTAIFLKPWSKGNFSDKEVAELEEIFRVYIFGFAREVQDFAGDFQMKYPFEIQGIAGC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 ELHSGKSPEGFFQVAFNGLDLLSFQNTTWVPSPGCGSLAQSVCHLLNHQYEGVTETVYNL
::::: . .:.. :..:::.:: .:.. :::: :: ::. : :. ::.:. ::: :
XP_011 ELHSGGAIVSFLRGALGGLDFLSVKNASCVPSPEGGSRAQKFCALII-QYQGIMETVRIL
130 140 150 160 170
190 200 210 220 230 240
pF1KE2 IRSTCPRFLLGLLDAGKMYVHRQVRPEAWLSSRPSLGSGQLLLVCHASGFYPKPVWVTWM
. ::::.:::.:.::: ..:::.::::::: :: : :.: ::::.:::::::::: ::
XP_011 LYETCPRYLLGVLNAGKADLQRQVKPEAWLSSGPSPGPGRLQLVCHVSGFYPKPVWVMWM
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE2 RNEQEQLGTKHGDILPNADGTWYLQVILEVASEEPAGLSCRVRHSSLGGQDIILYWGHHF
:.. ..:.
XP_011 RGNPTSIGSIVLAIIVPSLLLLLCLALWYMRRRSYQNIP
240 250 260 270
333 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 18:52:14 2016 done: Sun Nov 6 18:52:15 2016
Total Scan time: 6.730 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]