Result of FASTA (omim) for pFN21AE3183
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3183, 422 aa
  1>>>pF1KE3183 422 - 422 aa - 422 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4327+/-0.000328; mu= 11.5045+/- 0.021
 mean_var=203.7824+/-39.608, 0's: 0 Z-trim(122.8): 11  B-trim: 93 in 1/55
 Lambda= 0.089844
 statistics sampled from 41635 (41648) to 41635 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.793), E-opt: 0.2 (0.488), width:  16
 Scan time:  9.370

The best scores are:                                      opt bits E(85289)
NP_775740 (OMIM: 612501) ubiquitin-conjugating enz ( 375) 1711 233.7   6e-61
NP_001138807 (OMIM: 612501) ubiquitin-conjugating  ( 359) 1652 226.0 1.2e-58
NP_001271311 (OMIM: 612501) ubiquitin-conjugating  ( 340) 1365 188.8 1.8e-47
XP_005254844 (OMIM: 612501) PREDICTED: ubiquitin-c ( 314) 1219 169.9 8.3e-42
XP_016878215 (OMIM: 612501) PREDICTED: ubiquitin-c ( 298) 1160 162.2 1.6e-39
XP_016878216 (OMIM: 612501) PREDICTED: ubiquitin-c ( 279)  873 125.0 2.4e-28
XP_011520530 (OMIM: 612501) PREDICTED: ubiquitin-c ( 198)  652 96.1 8.2e-20
XP_006720833 (OMIM: 612501) PREDICTED: ubiquitin-c ( 235)  652 96.2 9.1e-20
XP_016878217 (OMIM: 612501) PREDICTED: ubiquitin-c ( 261)  634 93.9 4.9e-19
XP_005254845 (OMIM: 612501) PREDICTED: ubiquitin-c ( 296)  634 94.0 5.4e-19
NP_001138633 (OMIM: 615832) ubiquitin-conjugating  ( 161)  605 90.0 4.8e-18


>>NP_775740 (OMIM: 612501) ubiquitin-conjugating enzyme   (375 aa)
 initn: 1543 init1: 1355 opt: 1711  Z-score: 1215.2  bits: 233.7 E(85289): 6e-61
Smith-Waterman score: 1831; 74.1% identity (86.0% similar) in 386 aa overlap (41-422:6-375)

               20        30        40        50        60        70
pF1KE3 QPGPGQQLGGQGAAPGAGGGPGGGPGPGPCLRRELKLLESIFHRGHERFRIASACLDELS
                                     :. :::.: ::: ..::::::.:  :::: 
NP_775                          MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELH
                                        10        20        30     

               80        90        100       110       120         
pF1KE3 CEFLLAGAGGAGAGAAPGPH-LPPRGSVPGDPVRIHCNITESYPAVPPIWSVESDDPNLA
       :.::.   :        .:: :::       :. .:::::::::.  ::: :.:.::::.
NP_775 CQFLVPQQG--------SPHSLPP-------PLTLHCNITESYPSSSPIWFVDSEDPNLT
          40                50               60        70        80

     130       140       150       160       170       180         
pF1KE3 AVLERLVDIKKGNTLLLQHLKRIISDLCKLYNLPQHPDVEMLDQPLPAEQC-TQEDVSSE
       .::::: : :. :.:: :.:: .: .::.:::::.: ::::::::::. :  : :.:.::
NP_775 SVLERLEDTKN-NNLLRQQLKWLICELCSLYNLPKHLDVEMLDQPLPTGQNGTTEEVTSE
               90        100       110       120       130         

      190         200       210       220       230       240      
pF1KE3 DEDEE--MPEDTEDLDHYEMKEEEPAEGKKSEDDGIGKENLAILEKIKKNQRQDYLNGAV
       .:.::  : :: :::::::::::::  ::::::.:: ::::::::::.:.::::.:::::
NP_775 EEEEEEEMAEDIEDLDHYEMKEEEPISGKKSEDEGIEKENLAILEKIRKTQRQDHLNGAV
     140       150       160       170       180       190         

        250       260       270       280       290       300      
pF1KE3 SGSVQATDRLMKELRDIYRSQSFKGGNYAVELVNDSLYDWNVKLLKVDQDSALHNDLQIL
       ::::::.:::::::::::::::.: : :.:::.:::::::.::: ::: :: ::.:::::
NP_775 SGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQIL
     200       210       220       230       240       250         

        310       320       330       340       350       360      
pF1KE3 KEKEGADFILLNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSI
       ::::: ..::::::::::::::::::::: :::::::::::::.::::::::::::::::
NP_775 KEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSI
     260       270       280       290       300       310         

        370       380       390       400       410       420  
pF1KE3 ESVIMQISATLVKGKARVQFGANKSQYSLTRAQQSYKSLVQIHEKNGWYTPPKEDG
       :::::::.::::::::::::::::.::.:.::::::.:.:::::::::::::::::
NP_775 ESVIMQINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQIHEKNGWYTPPKEDG
     320       330       340       350       360       370     

>>NP_001138807 (OMIM: 612501) ubiquitin-conjugating enzy  (359 aa)
 initn: 1491 init1: 1355 opt: 1652  Z-score: 1174.1  bits: 226.0 E(85289): 1.2e-58
Smith-Waterman score: 1652; 71.6% identity (84.4% similar) in 366 aa overlap (60-422:2-359)

      30        40        50        60        70        80         
pF1KE3 GPGGGPGPGPCLRRELKLLESIFHRGHERFRIASACLDELSCEFLLAGAGGAGAGAAPGP
                                     :. :   ..: :..    .  .  : :   
NP_001                              MRMDSLTEEKLECRLWCCLSDPSPPGLAARC
                                            10        20        30 

      90       100       110       120       130       140         
pF1KE3 HLPPRGSVPGDPVRIHCNITESYPAVPPIWSVESDDPNLAAVLERLVDIKKGNTLLLQHL
        .  :. ::.  .:      ::::.  ::: :.:.::::..::::: : :. :.:: :.:
NP_001 CVLERSIVPS--LR-----QESYPSSSPIWFVDSEDPNLTSVLERLEDTKN-NNLLRQQL
              40               50        60        70         80   

     150       160       170       180        190         200      
pF1KE3 KRIISDLCKLYNLPQHPDVEMLDQPLPAEQC-TQEDVSSEDEDEE--MPEDTEDLDHYEM
       : .: .::.:::::.: ::::::::::. :  : :.:.::.:.::  : :: ::::::::
NP_001 KWLICELCSLYNLPKHLDVEMLDQPLPTGQNGTTEEVTSEEEEEEEEMAEDIEDLDHYEM
            90       100       110       120       130       140   

        210       220       230       240       250       260      
pF1KE3 KEEEPAEGKKSEDDGIGKENLAILEKIKKNQRQDYLNGAVSGSVQATDRLMKELRDIYRS
       :::::  ::::::.:: ::::::::::.:.::::.:::::::::::.:::::::::::::
NP_001 KEEEPISGKKSEDEGIEKENLAILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRS
           150       160       170       180       190       200   

        270       280       290       300       310       320      
pF1KE3 QSFKGGNYAVELVNDSLYDWNVKLLKVDQDSALHNDLQILKEKEGADFILLNFSFKDNFP
       ::.: : :.:::.:::::::.::: ::: :: ::.:::::::::: ..::::::::::::
NP_001 QSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFP
           210       220       230       240       250       260   

        330       340       350       360       370       380      
pF1KE3 FDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSIESVIMQISATLVKGKARVQF
       ::::::::: :::::::::::::.:::::::::::::::::::::::.::::::::::::
NP_001 FDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQF
           270       280       290       300       310       320   

        390       400       410       420  
pF1KE3 GANKSQYSLTRAQQSYKSLVQIHEKNGWYTPPKEDG
       ::::.::.:.::::::.:.:::::::::::::::::
NP_001 GANKNQYNLARAQQSYNSIVQIHEKNGWYTPPKEDG
           330       340       350         

>>NP_001271311 (OMIM: 612501) ubiquitin-conjugating enzy  (340 aa)
 initn: 1651 init1: 1355 opt: 1365  Z-score: 973.4  bits: 188.8 E(85289): 1.8e-47
Smith-Waterman score: 1608; 68.1% identity (79.4% similar) in 383 aa overlap (41-422:6-340)

               20        30        40        50        60        70
pF1KE3 QPGPGQQLGGQGAAPGAGGGPGGGPGPGPCLRRELKLLESIFHRGHERFRIASACLDELS
                                     :. :::.: ::: ..::::::.:  :::: 
NP_001                          MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELH
                                        10        20        30     

               80        90        100       110       120         
pF1KE3 CEFLLAGAGGAGAGAAPGPH-LPPRGSVPGDPVRIHCNITESYPAVPPIWSVESDDPNLA
       :.::.   :        .:: :::       :. .:::::::::.  ::: :.:.::::.
NP_001 CQFLVPQQG--------SPHSLPP-------PLTLHCNITESYPSSSPIWFVDSEDPNLT
          40                50               60        70        80

     130       140       150       160       170       180         
pF1KE3 AVLERLVDIKKGNTLLLQHLKRIISDLCKLYNLPQHPDVEMLDQPLPAEQCTQEDVSSED
       .::::: : :..:                            :.    .:. :.:.   :.
NP_001 SVLERLEDTKNNN----------------------------LNGT--TEEVTSEE---EE
               90                                     100          

     190       200       210       220       230       240         
pF1KE3 EDEEMPEDTEDLDHYEMKEEEPAEGKKSEDDGIGKENLAILEKIKKNQRQDYLNGAVSGS
       :.::: :: :::::::::::::  ::::::.:: ::::::::::.:.::::.::::::::
NP_001 EEEEMAEDIEDLDHYEMKEEEPISGKKSEDEGIEKENLAILEKIRKTQRQDHLNGAVSGS
       110       120       130       140       150       160       

     250       260       270       280       290       300         
pF1KE3 VQATDRLMKELRDIYRSQSFKGGNYAVELVNDSLYDWNVKLLKVDQDSALHNDLQILKEK
       :::.:::::::::::::::.: : :.:::.:::::::.::: ::: :: ::.::::::::
NP_001 VQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEK
       170       180       190       200       210       220       

     310       320       330       340       350       360         
pF1KE3 EGADFILLNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSIESV
       :: ..::::::::::::::::::::: :::::::::::::.:::::::::::::::::::
NP_001 EGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESV
       230       240       250       260       270       280       

     370       380       390       400       410       420  
pF1KE3 IMQISATLVKGKARVQFGANKSQYSLTRAQQSYKSLVQIHEKNGWYTPPKEDG
       ::::.::::::::::::::::.::.:.::::::.:.:::::::::::::::::
NP_001 IMQINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQIHEKNGWYTPPKEDG
       290       300       310       320       330       340

>>XP_005254844 (OMIM: 612501) PREDICTED: ubiquitin-conju  (314 aa)
 initn: 1051 init1: 863 opt: 1219  Z-score: 871.5  bits: 169.9 E(85289): 8.3e-42
Smith-Waterman score: 1339; 69.5% identity (82.1% similar) in 308 aa overlap (41-344:6-297)

               20        30        40        50        60        70
pF1KE3 QPGPGQQLGGQGAAPGAGGGPGGGPGPGPCLRRELKLLESIFHRGHERFRIASACLDELS
                                     :. :::.: ::: ..::::::.:  :::: 
XP_005                          MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELH
                                        10        20        30     

               80        90        100       110       120         
pF1KE3 CEFLLAGAGGAGAGAAPGPH-LPPRGSVPGDPVRIHCNITESYPAVPPIWSVESDDPNLA
       :.::.   :        .:: :::       :. .:::::::::.  ::: :.:.::::.
XP_005 CQFLVPQQG--------SPHSLPP-------PLTLHCNITESYPSSSPIWFVDSEDPNLT
          40                50               60        70        80

     130       140       150       160       170       180         
pF1KE3 AVLERLVDIKKGNTLLLQHLKRIISDLCKLYNLPQHPDVEMLDQPLPAEQC-TQEDVSSE
       .::::: : :. :.:: :.:: .: .::.:::::.: ::::::::::. :  : :.:.::
XP_005 SVLERLEDTKN-NNLLRQQLKWLICELCSLYNLPKHLDVEMLDQPLPTGQNGTTEEVTSE
               90        100       110       120       130         

      190         200       210       220       230       240      
pF1KE3 DEDEE--MPEDTEDLDHYEMKEEEPAEGKKSEDDGIGKENLAILEKIKKNQRQDYLNGAV
       .:.::  : :: :::::::::::::  ::::::.:: ::::::::::.:.::::.:::::
XP_005 EEEEEEEMAEDIEDLDHYEMKEEEPISGKKSEDEGIEKENLAILEKIRKTQRQDHLNGAV
     140       150       160       170       180       190         

        250       260       270       280       290       300      
pF1KE3 SGSVQATDRLMKELRDIYRSQSFKGGNYAVELVNDSLYDWNVKLLKVDQDSALHNDLQIL
       ::::::.:::::::::::::::.: : :.:::.:::::::.::: ::: :: ::.:::::
XP_005 SGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQIL
     200       210       220       230       240       250         

        310       320       330       340       350       360      
pF1KE3 KEKEGADFILLNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSI
       ::::: ..::::::::::::::::::::: :::::: :                      
XP_005 KEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGLVHPSKGRWLNVLTVVCLD     
     260       270       280       290       300       310         

        370       380       390       400       410       420  
pF1KE3 ESVIMQISATLVKGKARVQFGANKSQYSLTRAQQSYKSLVQIHEKNGWYTPPKEDG

>>XP_016878215 (OMIM: 612501) PREDICTED: ubiquitin-conju  (298 aa)
 initn: 999 init1: 863 opt: 1160  Z-score: 830.5  bits: 162.2 E(85289): 1.6e-39
Smith-Waterman score: 1160; 66.0% identity (79.9% similar) in 288 aa overlap (60-344:2-281)

      30        40        50        60        70        80         
pF1KE3 GPGGGPGPGPCLRRELKLLESIFHRGHERFRIASACLDELSCEFLLAGAGGAGAGAAPGP
                                     :. :   ..: :..    .  .  : :   
XP_016                              MRMDSLTEEKLECRLWCCLSDPSPPGLAARC
                                            10        20        30 

      90       100       110       120       130       140         
pF1KE3 HLPPRGSVPGDPVRIHCNITESYPAVPPIWSVESDDPNLAAVLERLVDIKKGNTLLLQHL
        .  :. ::.  .:      ::::.  ::: :.:.::::..::::: : :..: :: :.:
XP_016 CVLERSIVPS--LR-----QESYPSSSPIWFVDSEDPNLTSVLERLEDTKNNN-LLRQQL
              40               50        60        70         80   

     150       160       170       180        190         200      
pF1KE3 KRIISDLCKLYNLPQHPDVEMLDQPLPAEQC-TQEDVSSEDEDEE--MPEDTEDLDHYEM
       : .: .::.:::::.: ::::::::::. :  : :.:.::.:.::  : :: ::::::::
XP_016 KWLICELCSLYNLPKHLDVEMLDQPLPTGQNGTTEEVTSEEEEEEEEMAEDIEDLDHYEM
            90       100       110       120       130       140   

        210       220       230       240       250       260      
pF1KE3 KEEEPAEGKKSEDDGIGKENLAILEKIKKNQRQDYLNGAVSGSVQATDRLMKELRDIYRS
       :::::  ::::::.:: ::::::::::.:.::::.:::::::::::.:::::::::::::
XP_016 KEEEPISGKKSEDEGIEKENLAILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRS
           150       160       170       180       190       200   

        270       280       290       300       310       320      
pF1KE3 QSFKGGNYAVELVNDSLYDWNVKLLKVDQDSALHNDLQILKEKEGADFILLNFSFKDNFP
       ::.: : :.:::.:::::::.::: ::: :: ::.:::::::::: ..::::::::::::
XP_016 QSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFP
           210       220       230       240       250       260   

        330       340       350       360       370       380      
pF1KE3 FDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSIESVIMQISATLVKGKARVQF
       ::::::::: :::::: :                                          
XP_016 FDPPFVRVVLPVLSGGLVHPSKGRWLNVLTVVCLD                         
           270       280       290                                 

>>XP_016878216 (OMIM: 612501) PREDICTED: ubiquitin-conju  (279 aa)
 initn: 1159 init1: 863 opt: 873  Z-score: 629.8  bits: 125.0 E(85289): 2.4e-28
Smith-Waterman score: 1116; 62.0% identity (73.8% similar) in 305 aa overlap (41-344:6-262)

               20        30        40        50        60        70
pF1KE3 QPGPGQQLGGQGAAPGAGGGPGGGPGPGPCLRRELKLLESIFHRGHERFRIASACLDELS
                                     :. :::.: ::: ..::::::.:  :::: 
XP_016                          MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELH
                                        10        20        30     

               80        90        100       110       120         
pF1KE3 CEFLLAGAGGAGAGAAPGPH-LPPRGSVPGDPVRIHCNITESYPAVPPIWSVESDDPNLA
       :.::.   :        .:: :::       :. .:::::::::.  ::: :.:.::::.
XP_016 CQFLVPQQG--------SPHSLPP-------PLTLHCNITESYPSSSPIWFVDSEDPNLT
          40                50               60        70        80

     130       140       150       160       170       180         
pF1KE3 AVLERLVDIKKGNTLLLQHLKRIISDLCKLYNLPQHPDVEMLDQPLPAEQCTQEDVSSED
       .::::: : :..:                            :.    .:. :.:.   :.
XP_016 SVLERLEDTKNNN----------------------------LNG--TTEEVTSEE---EE
               90                                     100          

     190       200       210       220       230       240         
pF1KE3 EDEEMPEDTEDLDHYEMKEEEPAEGKKSEDDGIGKENLAILEKIKKNQRQDYLNGAVSGS
       :.::: :: :::::::::::::  ::::::.:: ::::::::::.:.::::.::::::::
XP_016 EEEEMAEDIEDLDHYEMKEEEPISGKKSEDEGIEKENLAILEKIRKTQRQDHLNGAVSGS
       110       120       130       140       150       160       

     250       260       270       280       290       300         
pF1KE3 VQATDRLMKELRDIYRSQSFKGGNYAVELVNDSLYDWNVKLLKVDQDSALHNDLQILKEK
       :::.:::::::::::::::.: : :.:::.:::::::.::: ::: :: ::.::::::::
XP_016 VQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEK
       170       180       190       200       210       220       

     310       320       330       340       350       360         
pF1KE3 EGADFILLNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSIESV
       :: ..::::::::::::::::::::: :::::: :                         
XP_016 EGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGLVHPSKGRWLNVLTVVCLD        
       230       240       250       260       270                 

     370       380       390       400       410       420  
pF1KE3 IMQISATLVKGKARVQFGANKSQYSLTRAQQSYKSLVQIHEKNGWYTPPKEDG

>>XP_011520530 (OMIM: 612501) PREDICTED: ubiquitin-conju  (198 aa)
 initn: 484 init1: 296 opt: 652  Z-score: 476.7  bits: 96.1 E(85289): 8.2e-20
Smith-Waterman score: 772; 62.3% identity (77.3% similar) in 207 aa overlap (41-243:6-196)

               20        30        40        50        60        70
pF1KE3 QPGPGQQLGGQGAAPGAGGGPGGGPGPGPCLRRELKLLESIFHRGHERFRIASACLDELS
                                     :. :::.: ::: ..::::::.:  :::: 
XP_011                          MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELH
                                        10        20        30     

               80        90        100       110       120         
pF1KE3 CEFLLAGAGGAGAGAAPGPH-LPPRGSVPGDPVRIHCNITESYPAVPPIWSVESDDPNLA
       :.::.   :.        :: :::       :. .:::::::::.  ::: :.:.::::.
XP_011 CQFLVPQQGS--------PHSLPP-------PLTLHCNITESYPSSSPIWFVDSEDPNLT
          40                50               60        70        80

     130       140       150       160       170       180         
pF1KE3 AVLERLVDIKKGNTLLLQHLKRIISDLCKLYNLPQHPDVEMLDQPLPAEQC-TQEDVSSE
       .::::: : :. :.:: :.:: .: .::.:::::.: ::::::::::. :  : :.:.::
XP_011 SVLERLEDTKN-NNLLRQQLKWLICELCSLYNLPKHLDVEMLDQPLPTGQNGTTEEVTSE
               90        100       110       120       130         

      190         200       210       220       230       240      
pF1KE3 DEDEE--MPEDTEDLDHYEMKEEEPAEGKKSEDDGIGKENLAILEKIKKNQRQDYLNGAV
       .:.::  : :: :::::::::::::  ::::::.:: ::::::::::.:.::::.::   
XP_011 EEEEEEEMAEDIEDLDHYEMKEEEPISGKKSEDEGIEKENLAILEKIRKTQRQDHLNSY 
     140       150       160       170       180       190         

        250       260       270       280       290       300      
pF1KE3 SGSVQATDRLMKELRDIYRSQSFKGGNYAVELVNDSLYDWNVKLLKVDQDSALHNDLQIL

>>XP_006720833 (OMIM: 612501) PREDICTED: ubiquitin-conju  (235 aa)
 initn: 520 init1: 296 opt: 652  Z-score: 475.8  bits: 96.2 E(85289): 9.1e-20
Smith-Waterman score: 772; 62.3% identity (77.3% similar) in 207 aa overlap (41-243:6-196)

               20        30        40        50        60        70
pF1KE3 QPGPGQQLGGQGAAPGAGGGPGGGPGPGPCLRRELKLLESIFHRGHERFRIASACLDELS
                                     :. :::.: ::: ..::::::.:  :::: 
XP_006                          MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELH
                                        10        20        30     

               80        90        100       110       120         
pF1KE3 CEFLLAGAGGAGAGAAPGPH-LPPRGSVPGDPVRIHCNITESYPAVPPIWSVESDDPNLA
       :.::.   :.        :: :::       :. .:::::::::.  ::: :.:.::::.
XP_006 CQFLVPQQGS--------PHSLPP-------PLTLHCNITESYPSSSPIWFVDSEDPNLT
          40                50               60        70        80

     130       140       150       160       170       180         
pF1KE3 AVLERLVDIKKGNTLLLQHLKRIISDLCKLYNLPQHPDVEMLDQPLPAEQC-TQEDVSSE
       .::::: : :. :.:: :.:: .: .::.:::::.: ::::::::::. :  : :.:.::
XP_006 SVLERLEDTKN-NNLLRQQLKWLICELCSLYNLPKHLDVEMLDQPLPTGQNGTTEEVTSE
               90        100       110       120       130         

      190         200       210       220       230       240      
pF1KE3 DEDEE--MPEDTEDLDHYEMKEEEPAEGKKSEDDGIGKENLAILEKIKKNQRQDYLNGAV
       .:.::  : :: :::::::::::::  ::::::.:: ::::::::::.:.::::.::   
XP_006 EEEEEEEMAEDIEDLDHYEMKEEEPISGKKSEDEGIEKENLAILEKIRKTQRQDHLNDNF
     140       150       160       170       180       190         

        250       260       270       280       290       300      
pF1KE3 SGSVQATDRLMKELRDIYRSQSFKGGNYAVELVNDSLYDWNVKLLKVDQDSALHNDLQIL
                                                                   
XP_006 PFDPPFVRVVLPVLSGGLVHPSKGRWLNVLTVVCLD                        
     200       210       220       230                             

>>XP_016878217 (OMIM: 612501) PREDICTED: ubiquitin-conju  (261 aa)
 initn: 967 init1: 634 opt: 634  Z-score: 462.7  bits: 93.9 E(85289): 4.9e-19
Smith-Waterman score: 1014; 51.2% identity (60.3% similar) in 383 aa overlap (41-422:6-261)

               20        30        40        50        60        70
pF1KE3 QPGPGQQLGGQGAAPGAGGGPGGGPGPGPCLRRELKLLESIFHRGHERFRIASACLDELS
                                     :. :::.: ::: ..::::::.:  :::: 
XP_016                          MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELH
                                        10        20        30     

               80        90        100       110       120         
pF1KE3 CEFLLAGAGGAGAGAAPGPH-LPPRGSVPGDPVRIHCNITESYPAVPPIWSVESDDPNLA
       :.::.   :        .:: :::       :. .:::::::::.  ::: :.:.::::.
XP_016 CQFLVPQQG--------SPHSLPP-------PLTLHCNITESYPSSSPIWFVDSEDPNLT
          40                50               60        70        80

     130       140       150       160       170       180         
pF1KE3 AVLERLVDIKKGNTLLLQHLKRIISDLCKLYNLPQHPDVEMLDQPLPAEQCTQEDVSSED
       .::::: : :..:                            :.    .:. :.:.   :.
XP_016 SVLERLEDTKNNN----------------------------LNGT--TEEVTSEE---EE
               90                                     100          

     190       200       210       220       230       240         
pF1KE3 EDEEMPEDTEDLDHYEMKEEEPAEGKKSEDDGIGKENLAILEKIKKNQRQDYLNGAVSGS
       :.::: :: :::::::::::::  ::::::.:: ::::::::::.:.::::.::      
XP_016 EEEEMAEDIEDLDHYEMKEEEPISGKKSEDEGIEKENLAILEKIRKTQRQDHLN------
       110       120       130       140       150       160       

     250       260       270       280       290       300         
pF1KE3 VQATDRLMKELRDIYRSQSFKGGNYAVELVNDSLYDWNVKLLKVDQDSALHNDLQILKEK
                                                                   
XP_016 ------------------------------------------------------------
                                                                   

     310       320       330       340       350       360         
pF1KE3 EGADFILLNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSIESV
                    ::::::::::::: :::::::::::::.:::::::::::::::::::
XP_016 -------------DNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESV
                          170       180       190       200        

     370       380       390       400       410       420  
pF1KE3 IMQISATLVKGKARVQFGANKSQYSLTRAQQSYKSLVQIHEKNGWYTPPKEDG
       ::::.::::::::::::::::.::.:.::::::.:.:::::::::::::::::
XP_016 IMQINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQIHEKNGWYTPPKEDG
      210       220       230       240       250       260 

>>XP_005254845 (OMIM: 612501) PREDICTED: ubiquitin-conju  (296 aa)
 initn: 971 init1: 634 opt: 634  Z-score: 462.0  bits: 94.0 E(85289): 5.4e-19
Smith-Waterman score: 1237; 57.3% identity (67.1% similar) in 386 aa overlap (41-422:6-296)

               20        30        40        50        60        70
pF1KE3 QPGPGQQLGGQGAAPGAGGGPGGGPGPGPCLRRELKLLESIFHRGHERFRIASACLDELS
                                     :. :::.: ::: ..::::::.:  :::: 
XP_005                          MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELH
                                        10        20        30     

               80        90        100       110       120         
pF1KE3 CEFLLAGAGGAGAGAAPGPH-LPPRGSVPGDPVRIHCNITESYPAVPPIWSVESDDPNLA
       :.::.   :        .:: :::       :. .:::::::::.  ::: :.:.::::.
XP_005 CQFLVPQQG--------SPHSLPP-------PLTLHCNITESYPSSSPIWFVDSEDPNLT
          40                50               60        70        80

     130       140       150       160       170       180         
pF1KE3 AVLERLVDIKKGNTLLLQHLKRIISDLCKLYNLPQHPDVEMLDQPLPAEQC-TQEDVSSE
       .::::: : :. :.:: :.:: .: .::.:::::.: ::::::::::. :  : :.:.::
XP_005 SVLERLEDTKN-NNLLRQQLKWLICELCSLYNLPKHLDVEMLDQPLPTGQNGTTEEVTSE
               90        100       110       120       130         

      190         200       210       220       230       240      
pF1KE3 DEDEE--MPEDTEDLDHYEMKEEEPAEGKKSEDDGIGKENLAILEKIKKNQRQDYLNGAV
       .:.::  : :: :::::::::::::  ::::::.:: ::::::::::.:.::::.::   
XP_005 EEEEEEEMAEDIEDLDHYEMKEEEPISGKKSEDEGIEKENLAILEKIRKTQRQDHLN---
     140       150       160       170       180       190         

        250       260       270       280       290       300      
pF1KE3 SGSVQATDRLMKELRDIYRSQSFKGGNYAVELVNDSLYDWNVKLLKVDQDSALHNDLQIL
                                                                   
XP_005 ------------------------------------------------------------
                                                                   

        310       320       330       340       350       360      
pF1KE3 KEKEGADFILLNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSI
                       ::::::::::::: :::::::::::::.::::::::::::::::
XP_005 ----------------DNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSI
                        200       210       220       230       240

        370       380       390       400       410       420  
pF1KE3 ESVIMQISATLVKGKARVQFGANKSQYSLTRAQQSYKSLVQIHEKNGWYTPPKEDG
       :::::::.::::::::::::::::.::.:.::::::.:.:::::::::::::::::
XP_005 ESVIMQINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQIHEKNGWYTPPKEDG
              250       260       270       280       290      




422 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 18:53:34 2016 done: Sun Nov  6 18:53:36 2016
 Total Scan time:  9.370 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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