FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2138, 129 aa 1>>>pF1KE2138 129 - 129 aa - 129 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9308+/-0.000325; mu= 12.7307+/- 0.020 mean_var=57.5098+/-11.474, 0's: 0 Z-trim(115.5): 45 B-trim: 571 in 2/52 Lambda= 0.169123 statistics sampled from 25957 (26012) to 25957 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.689), E-opt: 0.2 (0.305), width: 16 Scan time: 4.350 The best scores are: opt bits E(85289) NP_003508 (OMIM: 602797) histone H2A type 2-C [Hom ( 129) 813 206.0 1.4e-53 NP_003507 (OMIM: 142720) histone H2A type 2-A [Hom ( 130) 796 201.8 2.5e-52 NP_003500 (OMIM: 602787) histone H2A type 1 [Homo ( 130) 789 200.1 8.1e-52 NP_003505 (OMIM: 602796) histone H2A type 1 [Homo ( 130) 789 200.1 8.1e-52 NP_003502 (OMIM: 602793) histone H2A type 1 [Homo ( 130) 789 200.1 8.1e-52 NP_003501 (OMIM: 602788) histone H2A type 1 [Homo ( 130) 789 200.1 8.1e-52 NP_066408 (OMIM: 615012) histone H2A type 1 [Homo ( 130) 789 200.1 8.1e-52 NP_003503 (OMIM: 602794) histone H2A type 1-C [Hom ( 130) 789 200.1 8.1e-52 NP_254280 (OMIM: 615015) histone H2A type 3 [Homo ( 130) 785 199.2 1.6e-51 NP_066409 (OMIM: 602792) histone H2A type 1-D [Hom ( 130) 785 199.2 1.6e-51 NP_542163 (OMIM: 615013) histone H2A type 1-H [Hom ( 128) 783 198.7 2.2e-51 NP_066390 (OMIM: 602786) histone H2A type 1-B/E [H ( 130) 782 198.4 2.7e-51 NP_003504 (OMIM: 602795) histone H2A type 1-B/E [H ( 130) 782 198.4 2.7e-51 NP_066544 (OMIM: 602791) histone cluster 1, H2aj [ ( 128) 780 197.9 3.7e-51 NP_778235 (OMIM: 615014) histone H2A type 2-B [Hom ( 130) 779 197.7 4.4e-51 NP_734466 (OMIM: 613499) histone H2A type 1-A [Hom ( 131) 773 196.2 1.2e-50 NP_002096 (OMIM: 601772) histone H2AX [Homo sapien ( 143) 738 187.7 4.9e-48 XP_011542037 (OMIM: 610054) PREDICTED: core histon ( 195) 496 128.7 3.8e-30 XP_011542036 (OMIM: 610054) PREDICTED: core histon ( 196) 496 128.7 3.8e-30 XP_005272192 (OMIM: 610054) PREDICTED: core histon ( 198) 496 128.7 3.8e-30 XP_005272191 (OMIM: 610054) PREDICTED: core histon ( 199) 496 128.7 3.9e-30 XP_016865558 (OMIM: 610054) PREDICTED: core histon ( 222) 496 128.8 4.2e-30 XP_016865557 (OMIM: 610054) PREDICTED: core histon ( 235) 496 128.8 4.4e-30 XP_016865556 (OMIM: 610054) PREDICTED: core histon ( 251) 496 128.8 4.7e-30 XP_011542035 (OMIM: 610054) PREDICTED: core histon ( 252) 496 128.8 4.7e-30 XP_011542034 (OMIM: 610054) PREDICTED: core histon ( 269) 496 128.8 5e-30 XP_011542033 (OMIM: 610054) PREDICTED: core histon ( 270) 496 128.8 5e-30 XP_005272189 (OMIM: 610054) PREDICTED: core histon ( 368) 496 128.9 6.4e-30 NP_613075 (OMIM: 610054) core histone macro-H2A.1 ( 369) 496 128.9 6.4e-30 XP_011542032 (OMIM: 610054) PREDICTED: core histon ( 371) 496 128.9 6.5e-30 NP_004884 (OMIM: 610054) core histone macro-H2A.1 ( 371) 496 128.9 6.5e-30 NP_001035248 (OMIM: 610054) core histone macro-H2A ( 371) 496 128.9 6.5e-30 NP_613258 (OMIM: 610054) core histone macro-H2A.1 ( 372) 496 128.9 6.5e-30 XP_011542031 (OMIM: 610054) PREDICTED: core histon ( 372) 496 128.9 6.5e-30 NP_061119 (OMIM: 616141) core histone macro-H2A.2 ( 372) 490 127.4 1.8e-29 NP_002097 (OMIM: 142763) histone H2A.Z [Homo sapie ( 128) 455 118.6 2.7e-27 NP_542451 (OMIM: 300445) histone H2A-Bbd type 2/3 ( 115) 300 80.8 6.1e-16 XP_011531366 (OMIM: 135300,182530,610733) PREDICTE (1276) 158 46.7 0.00012 XP_005264572 (OMIM: 135300,182530,610733) PREDICTE (1318) 158 46.7 0.00012 XP_011531364 (OMIM: 135300,182530,610733) PREDICTE (1326) 158 46.7 0.00013 NP_005624 (OMIM: 135300,182530,610733) son of seve (1333) 158 46.7 0.00013 NP_008870 (OMIM: 601247,616559) son of sevenless h (1332) 137 41.6 0.0044 >>NP_003508 (OMIM: 602797) histone H2A type 2-C [Homo sa (129 aa) initn: 813 init1: 813 opt: 813 Z-score: 1082.9 bits: 206.0 E(85289): 1.4e-53 Smith-Waterman score: 813; 100.0% identity (100.0% similar) in 129 aa overlap (1-129:1-129) 10 20 30 40 50 60 pF1KE2 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 70 80 90 100 110 120 pF1KE2 TESHKAKSK ::::::::: NP_003 TESHKAKSK >>NP_003507 (OMIM: 142720) histone H2A type 2-A [Homo sa (130 aa) initn: 804 init1: 785 opt: 796 Z-score: 1060.5 bits: 201.8 E(85289): 2.5e-52 Smith-Waterman score: 796; 98.5% identity (99.2% similar) in 130 aa overlap (1-129:1-130) 10 20 30 40 50 60 pF1KE2 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 70 80 90 100 110 120 pF1KE2 TESH-KAKSK :::: :::.: NP_003 TESHHKAKGK 130 >>NP_003500 (OMIM: 602787) histone H2A type 1 [Homo sapi (130 aa) initn: 797 init1: 778 opt: 789 Z-score: 1051.2 bits: 200.1 E(85289): 8.1e-52 Smith-Waterman score: 789; 96.9% identity (99.2% similar) in 130 aa overlap (1-129:1-130) 10 20 30 40 50 60 pF1KE2 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT ::::::::::::::::.::::::::::::::::::::::::::::::::::.:::::::: NP_003 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 70 80 90 100 110 120 pF1KE2 TESH-KAKSK :::: :::.: NP_003 TESHHKAKGK 130 >>NP_003505 (OMIM: 602796) histone H2A type 1 [Homo sapi (130 aa) initn: 797 init1: 778 opt: 789 Z-score: 1051.2 bits: 200.1 E(85289): 8.1e-52 Smith-Waterman score: 789; 96.9% identity (99.2% similar) in 130 aa overlap (1-129:1-130) 10 20 30 40 50 60 pF1KE2 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT ::::::::::::::::.::::::::::::::::::::::::::::::::::.:::::::: NP_003 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 70 80 90 100 110 120 pF1KE2 TESH-KAKSK :::: :::.: NP_003 TESHHKAKGK 130 >>NP_003502 (OMIM: 602793) histone H2A type 1 [Homo sapi (130 aa) initn: 797 init1: 778 opt: 789 Z-score: 1051.2 bits: 200.1 E(85289): 8.1e-52 Smith-Waterman score: 789; 96.9% identity (99.2% similar) in 130 aa overlap (1-129:1-130) 10 20 30 40 50 60 pF1KE2 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT ::::::::::::::::.::::::::::::::::::::::::::::::::::.:::::::: NP_003 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 70 80 90 100 110 120 pF1KE2 TESH-KAKSK :::: :::.: NP_003 TESHHKAKGK 130 >>NP_003501 (OMIM: 602788) histone H2A type 1 [Homo sapi (130 aa) initn: 797 init1: 778 opt: 789 Z-score: 1051.2 bits: 200.1 E(85289): 8.1e-52 Smith-Waterman score: 789; 96.9% identity (99.2% similar) in 130 aa overlap (1-129:1-130) 10 20 30 40 50 60 pF1KE2 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT ::::::::::::::::.::::::::::::::::::::::::::::::::::.:::::::: NP_003 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 70 80 90 100 110 120 pF1KE2 TESH-KAKSK :::: :::.: NP_003 TESHHKAKGK 130 >>NP_066408 (OMIM: 615012) histone H2A type 1 [Homo sapi (130 aa) initn: 797 init1: 778 opt: 789 Z-score: 1051.2 bits: 200.1 E(85289): 8.1e-52 Smith-Waterman score: 789; 96.9% identity (99.2% similar) in 130 aa overlap (1-129:1-130) 10 20 30 40 50 60 pF1KE2 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT ::::::::::::::::.::::::::::::::::::::::::::::::::::.:::::::: NP_066 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_066 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 70 80 90 100 110 120 pF1KE2 TESH-KAKSK :::: :::.: NP_066 TESHHKAKGK 130 >>NP_003503 (OMIM: 602794) histone H2A type 1-C [Homo sa (130 aa) initn: 797 init1: 778 opt: 789 Z-score: 1051.2 bits: 200.1 E(85289): 8.1e-52 Smith-Waterman score: 789; 96.9% identity (99.2% similar) in 130 aa overlap (1-129:1-130) 10 20 30 40 50 60 pF1KE2 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT :::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::: NP_003 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK :::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::: NP_003 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 70 80 90 100 110 120 pF1KE2 TESH-KAKSK :::: :::.: NP_003 TESHHKAKGK 130 >>NP_254280 (OMIM: 615015) histone H2A type 3 [Homo sapi (130 aa) initn: 793 init1: 774 opt: 785 Z-score: 1046.0 bits: 199.2 E(85289): 1.6e-51 Smith-Waterman score: 785; 96.2% identity (99.2% similar) in 130 aa overlap (1-129:1-130) 10 20 30 40 50 60 pF1KE2 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT ::::::::::::::::::::::::::::::::::::::::.::::::::::.:::::::: NP_254 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK :::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::: NP_254 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 70 80 90 100 110 120 pF1KE2 TESH-KAKSK :::: :::.: NP_254 TESHHKAKGK 130 >>NP_066409 (OMIM: 602792) histone H2A type 1-D [Homo sa (130 aa) initn: 793 init1: 774 opt: 785 Z-score: 1046.0 bits: 199.2 E(85289): 1.6e-51 Smith-Waterman score: 785; 96.2% identity (99.2% similar) in 130 aa overlap (1-129:1-130) 10 20 30 40 50 60 pF1KE2 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT ::::::::::::::::.:::::::::::::::::::::::.::::::::::.:::::::: NP_066 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_066 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 70 80 90 100 110 120 pF1KE2 TESH-KAKSK :::: :::.: NP_066 TESHHKAKGK 130 129 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 18:55:54 2016 done: Sun Nov 6 18:55:55 2016 Total Scan time: 4.350 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]