FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5328, 272 aa 1>>>pF1KE5328 272 - 272 aa - 272 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.9097+/-0.000639; mu= 12.5872+/- 0.039 mean_var=76.8291+/-15.201, 0's: 0 Z-trim(112.0): 6 B-trim: 0 in 0/51 Lambda= 0.146323 statistics sampled from 12805 (12810) to 12805 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.76), E-opt: 0.2 (0.394), width: 16 Scan time: 2.280 The best scores are: opt bits E(32554) CCDS925.1 PRKAB2 gene_id:5565|Hs108|chr1 ( 272) 1840 397.1 6.8e-111 CCDS9191.1 PRKAB1 gene_id:5564|Hs108|chr12 ( 270) 1298 282.7 1.9e-76 >>CCDS925.1 PRKAB2 gene_id:5565|Hs108|chr1 (272 aa) initn: 1840 init1: 1840 opt: 1840 Z-score: 2104.3 bits: 397.1 E(32554): 6.8e-111 Smith-Waterman score: 1840; 100.0% identity (100.0% similar) in 272 aa overlap (1-272:1-272) 10 20 30 40 50 60 pF1KE5 MGNTTSDRVSGERHGAKAARSEGAGGHAPGKEHKIMVGSTDDPSVFSLPDSKLPGDKEFV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS92 MGNTTSDRVSGERHGAKAARSEGAGGHAPGKEHKIMVGSTDDPSVFSLPDSKLPGDKEFV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 SWQQDLEDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS92 SWQQDLEDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 GEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS92 GEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCRD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 LSSSPPGPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS92 LSSSPPGPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNH 190 200 210 220 230 240 250 260 270 pF1KE5 LYALSIKDSVMVLSATHRYKKKYVTTLLYKPI :::::::::::::::::::::::::::::::: CCDS92 LYALSIKDSVMVLSATHRYKKKYVTTLLYKPI 250 260 270 >>CCDS9191.1 PRKAB1 gene_id:5564|Hs108|chr12 (270 aa) initn: 1276 init1: 555 opt: 1298 Z-score: 1486.0 bits: 282.7 E(32554): 1.9e-76 Smith-Waterman score: 1298; 70.3% identity (87.2% similar) in 273 aa overlap (1-272:1-270) 10 20 30 40 50 pF1KE5 MGNTTSDRVSGERHGA-KAARSEGAGGHAPGKEHKIMVGSTDDPSVFSLPDSKLPGDKEF ::::.:.:.. ::::. :. : ...:: : . ::.. : .: ..: . : : .:: CCDS91 MGNTSSERAALERHGGHKTPRRDSSGGTKDGDRPKILMDSPEDADLFHSEEIKAPEKEEF 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE5 VSWQQDLEDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLP ..::.::: . : ::::::.::. :::::..:::::::: :.:: .:::.:::::::: CCDS91 LAWQHDLEVNDKAPAQARPTVFRWTGGGKEVYLSGSFNNWS-KLPLTRSHNNFVAILDLP 70 80 90 100 110 120 130 140 150 160 170 pF1KE5 EGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCR ::::::::::::::.::::::.:::::::.::.:.:::.:::::::: .::.. :..: CCDS91 EGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVS-- 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE5 DLSSSPPGPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLN .::::::::: :: :. . ::::..:::::::::::::::::.::::::::::::::::: CCDS91 ELSSSPPGPYHQEPYVCKPEERFRAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLN 180 190 200 210 220 230 240 250 260 270 pF1KE5 HLYALSIKDSVMVLSATHRYKKKYVTTLLYKPI :::::::::.::::::::::::::::::::::: CCDS91 HLYALSIKDGVMVLSATHRYKKKYVTTLLYKPI 240 250 260 270 272 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 23:49:02 2016 done: Mon Nov 7 23:49:03 2016 Total Scan time: 2.280 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]