FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3002, 68 aa 1>>>pF1KE3002 68 - 68 aa - 68 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8561+/-0.000501; mu= 8.5542+/- 0.030 mean_var=49.1863+/- 9.960, 0's: 0 Z-trim(113.1): 15 B-trim: 545 in 1/50 Lambda= 0.182874 statistics sampled from 13791 (13806) to 13791 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.824), E-opt: 0.2 (0.424), width: 16 Scan time: 1.400 The best scores are: opt bits E(32554) CCDS696.1 GNG5 gene_id:2787|Hs108|chr1 ( 68) 436 121.6 3.7e-29 CCDS35107.1 GNG10 gene_id:2790|Hs108|chr9 ( 68) 264 76.2 1.7e-15 CCDS12091.1 GNG7 gene_id:2788|Hs108|chr19 ( 68) 254 73.6 1.1e-14 CCDS30749.1 GNG12 gene_id:55970|Hs108|chr1 ( 72) 234 68.3 4.3e-13 CCDS32082.1 GNG2 gene_id:54331|Hs108|chr14 ( 71) 226 66.2 1.8e-12 CCDS1607.1 GNG4 gene_id:2786|Hs108|chr1 ( 75) 211 62.3 3e-11 CCDS8032.1 GNG3 gene_id:2785|Hs108|chr11 ( 75) 210 62.0 3.6e-11 >>CCDS696.1 GNG5 gene_id:2787|Hs108|chr1 (68 aa) initn: 436 init1: 436 opt: 436 Z-score: 637.0 bits: 121.6 E(32554): 3.7e-29 Smith-Waterman score: 436; 100.0% identity (100.0% similar) in 68 aa overlap (1-68:1-68) 10 20 30 40 50 60 pF1KE3 MSGSSSVAAMKKVVQQLRLEAGLNRVKVSQAAADLKQFCLQNAQHDPLLTGVSSSTNPFR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 MSGSSSVAAMKKVVQQLRLEAGLNRVKVSQAAADLKQFCLQNAQHDPLLTGVSSSTNPFR 10 20 30 40 50 60 pF1KE3 PQKVCSFL :::::::: CCDS69 PQKVCSFL >>CCDS35107.1 GNG10 gene_id:2790|Hs108|chr9 (68 aa) initn: 280 init1: 264 opt: 264 Z-score: 391.7 bits: 76.2 E(32554): 1.7e-15 Smith-Waterman score: 264; 52.9% identity (91.2% similar) in 68 aa overlap (1-68:1-68) 10 20 30 40 50 60 pF1KE3 MSGSSSVAAMKKVVQQLRLEAGLNRVKVSQAAADLKQFCLQNAQHDPLLTGVSSSTNPFR ::...:..:....:.::.::::..:.:::::::.:.:.:.::: .: ::.:: ...:::: CCDS35 MSSGASASALQRLVEQLKLEAGVERIKVSQAAAELQQYCMQNACKDALLVGVPAGSNPFR 10 20 30 40 50 60 pF1KE3 PQKVCSFL . :..: CCDS35 EPRSCALL >>CCDS12091.1 GNG7 gene_id:2788|Hs108|chr19 (68 aa) initn: 258 init1: 254 opt: 254 Z-score: 377.4 bits: 73.6 E(32554): 1.1e-14 Smith-Waterman score: 254; 51.5% identity (86.8% similar) in 68 aa overlap (1-68:1-68) 10 20 30 40 50 60 pF1KE3 MSGSSSVAAMKKVVQQLRLEAGLNRVKVSQAAADLKQFCLQNAQHDPLLTGVSSSTNPFR ::.....: .:.:.:::.:::..:.:::.::.:: ..: :.:..::::.:: .: :::. CCDS12 MSATNNIAQARKLVEQLRIEAGIERIKVSKAASDLMSYCEQHARNDPLLVGVPASENPFK 10 20 30 40 50 60 pF1KE3 PQKVCSFL .: : .: CCDS12 DKKPCIIL >>CCDS30749.1 GNG12 gene_id:55970|Hs108|chr1 (72 aa) initn: 231 init1: 216 opt: 234 Z-score: 348.5 bits: 68.3 E(32554): 4.3e-13 Smith-Waterman score: 234; 46.3% identity (85.1% similar) in 67 aa overlap (2-68:6-72) 10 20 30 40 50 pF1KE3 MSGSSSVAAMKKVVQQLRLEAGLNRVKVSQAAADLKQFCLQNAQHDPLLTGVSSST ......: ...::::::::...:.:::.:.::: ..: ..:. :::: :. .: CCDS30 MSSKTASTNNIAQARRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPTSE 10 20 30 40 50 60 60 pF1KE3 NPFRPQKVCSFL :::. .:.: .: CCDS30 NPFKDKKTCIIL 70 >>CCDS32082.1 GNG2 gene_id:54331|Hs108|chr14 (71 aa) initn: 197 init1: 187 opt: 226 Z-score: 337.2 bits: 66.2 E(32554): 1.8e-12 Smith-Waterman score: 226; 48.5% identity (82.4% similar) in 68 aa overlap (2-68:4-71) 10 20 30 40 50 pF1KE3 MSGSSSVAAMKKVVQQLRLEAGLNRVKVSQAAADLKQFCLQNAQHDPLLTGVSSSTNP ....:.: .:.:.::..::...:.:::.::::: .: .:..::::: : .: :: CCDS32 MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENP 10 20 30 40 50 60 60 pF1KE3 FRPQKV-CSFL :: .: :..: CCDS32 FREKKFFCAIL 70 >>CCDS1607.1 GNG4 gene_id:2786|Hs108|chr1 (75 aa) initn: 189 init1: 175 opt: 211 Z-score: 315.5 bits: 62.3 E(32554): 3e-11 Smith-Waterman score: 211; 45.6% identity (79.4% similar) in 68 aa overlap (2-68:8-75) 10 20 30 40 50 pF1KE3 MSGSSSVAAMKKVVQQLRLEAGLNRVKVSQAAADLKQFCLQNAQHDPLLTGVSS ....:.. .:.:.::..:: ..::::::::::: .: ....:::. : . CCDS16 MKEGMSNNSTTSISQARKAVEQLKMEACMDRVKVSQAAADLLAYCEAHVREDPLIIPVPA 10 20 30 40 50 60 60 pF1KE3 STNPFRPQKV-CSFL : :::: .: :..: CCDS16 SENPFREKKFFCTIL 70 >>CCDS8032.1 GNG3 gene_id:2785|Hs108|chr11 (75 aa) initn: 177 init1: 177 opt: 210 Z-score: 314.0 bits: 62.0 E(32554): 3.6e-11 Smith-Waterman score: 210; 46.4% identity (78.3% similar) in 69 aa overlap (1-68:7-75) 10 20 30 40 50 pF1KE3 MSGSSSVAAMKKVVQQLRLEAGLNRVKVSQAAADLKQFCLQNAQHDPLLTGVSS .... :.. .:.:.::..::.: :.:::.::::: .: .: .:::.: : . CCDS80 MKGETPVNSTMSIGQARKMVEQLKIEASLCRIKVSKAAADLMTYCDAHACEDPLITPVPT 10 20 30 40 50 60 60 pF1KE3 STNPFRPQKV-CSFL : :::: .: :..: CCDS80 SENPFREKKFFCALL 70 68 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 19:14:54 2016 done: Sun Nov 6 19:14:54 2016 Total Scan time: 1.400 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]