FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8915, 257 aa 1>>>pF1KB8915 257 - 257 aa - 257 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9582+/-0.000616; mu= 17.9666+/- 0.037 mean_var=78.7336+/-16.206, 0's: 0 Z-trim(113.2): 37 B-trim: 872 in 1/49 Lambda= 0.144542 statistics sampled from 13832 (13869) to 13832 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.789), E-opt: 0.2 (0.426), width: 16 Scan time: 2.480 The best scores are: opt bits E(32554) CCDS291.1 NR0B2 gene_id:8431|Hs108|chr1 ( 257) 1783 380.4 6.6e-106 CCDS74905.1 NR2C2 gene_id:7182|Hs108|chr3 ( 596) 295 70.5 3.1e-12 CCDS2621.1 NR2C2 gene_id:7182|Hs108|chr3 ( 615) 295 70.5 3.2e-12 CCDS14223.1 NR0B1 gene_id:190|Hs108|chrX ( 470) 293 69.9 3.5e-12 CCDS5063.1 NR2E1 gene_id:7101|Hs108|chr6 ( 385) 277 66.5 3e-11 CCDS69165.1 NR2E1 gene_id:7101|Hs108|chr6 ( 422) 277 66.6 3.3e-11 >>CCDS291.1 NR0B2 gene_id:8431|Hs108|chr1 (257 aa) initn: 1783 init1: 1783 opt: 1783 Z-score: 2014.8 bits: 380.4 E(32554): 6.6e-106 Smith-Waterman score: 1783; 100.0% identity (100.0% similar) in 257 aa overlap (1-257:1-257) 10 20 30 40 50 60 pF1KB8 MSTSQPGACPCQGAASRPAILYALLSSSLKAVPRPRSRCLCRQHRPVQLCAPHRTCREAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS29 MSTSQPGACPCQGAASRPAILYALLSSSLKAVPRPRSRCLCRQHRPVQLCAPHRTCREAL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 DVLAKTVAFLRNLPSFWQLPPQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVPSILKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS29 DVLAKTVAFLRNLPSFWQLPPQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVPSILKK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 ILLEEPSSSGGSGQLPDRPQPSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS29 ILLEEPSSSGGSGQLPDRPQPSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 GLQAASHIGHLQQEAHWVLCEVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS29 GLQAASHIGHLQQEAHWVLCEVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPI 190 200 210 220 230 240 250 pF1KB8 IGDVDIAGLLGDMLLLR ::::::::::::::::: CCDS29 IGDVDIAGLLGDMLLLR 250 >>CCDS74905.1 NR2C2 gene_id:7182|Hs108|chr3 (596 aa) initn: 277 init1: 197 opt: 295 Z-score: 333.2 bits: 70.5 E(32554): 3.1e-12 Smith-Waterman score: 295; 29.4% identity (61.3% similar) in 204 aa overlap (53-254:384-580) 30 40 50 60 70 80 pF1KB8 ALLSSSLKAVPRPRSRCLCRQHRPVQLCAPHRTCREALDVLAKTVAFLRNLPSFWQLPPQ : :. : .: .. . :..:.: : . CCDS74 IIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQD 360 370 380 390 400 410 90 100 110 120 130 140 pF1KB8 DQRRLLQGCWGPLFLLGLAQDA--VTFEVAEAPVPSILKKILLEEPSSSGGSGQLPDRPQ . :...::. :: ::::: : ... . : . . :.. . .: . :: :: . CCDS74 CNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSI-QEDKLSG------DRIK 420 430 440 450 460 150 160 170 180 190 200 pF1KB8 PSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVPGLQAASHIGHLQQEAHWVLC . . :: .:. .:... ::: ::. .::.:: ::: ..:.: ..:..:. : CCDS74 QVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEKAQMELQ 470 480 490 500 510 520 210 220 230 240 250 pF1KB8 EVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPIIGDVDIAGLLGDMLLLR . .. ::.:.:. .:. . ... .::: .::.:.: ... .: CCDS74 DYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYILKMETAE 530 540 550 560 570 580 CCDS74 YNGQITGASL 590 >>CCDS2621.1 NR2C2 gene_id:7182|Hs108|chr3 (615 aa) initn: 277 init1: 197 opt: 295 Z-score: 333.0 bits: 70.5 E(32554): 3.2e-12 Smith-Waterman score: 295; 29.4% identity (61.3% similar) in 204 aa overlap (53-254:403-599) 30 40 50 60 70 80 pF1KB8 ALLSSSLKAVPRPRSRCLCRQHRPVQLCAPHRTCREALDVLAKTVAFLRNLPSFWQLPPQ : :. : .: .. . :..:.: : . CCDS26 IIEVEGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRLLFLSMHWARSIPAFQALGQD 380 390 400 410 420 430 90 100 110 120 130 140 pF1KB8 DQRRLLQGCWGPLFLLGLAQDA--VTFEVAEAPVPSILKKILLEEPSSSGGSGQLPDRPQ . :...::. :: ::::: : ... . : . . :.. . .: . :: :: . CCDS26 CNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSI-QEDKLSG------DRIK 440 450 460 470 480 150 160 170 180 190 200 pF1KB8 PSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVPGLQAASHIGHLQQEAHWVLC . . :: .:. .:... ::: ::. .::.:: ::: ..:.: ..:..:. : CCDS26 QVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEKAQMELQ 490 500 510 520 530 540 210 220 230 240 250 pF1KB8 EVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPIIGDVDIAGLLGDMLLLR . .. ::.:.:. .:. . ... .::: .::.:.: ... .: CCDS26 DYVQKTYSEDTYRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYILKMETAE 550 560 570 580 590 600 CCDS26 YNGQITGASL 610 >>CCDS14223.1 NR0B1 gene_id:190|Hs108|chrX (470 aa) initn: 519 init1: 293 opt: 293 Z-score: 332.2 bits: 69.9 E(32554): 3.5e-12 Smith-Waterman score: 502; 36.7% identity (61.0% similar) in 267 aa overlap (9-254:200-466) 10 20 30 pF1KB8 MSTSQPGACPC-QGAASRPAILYALLSSS--LKAVP-- : : . .. . :: . .:. .:.: CCDS14 AWWDRSYFAQRPGGKEALPGGRATALLYRCCFCGEDHPQQGSTLYCVPTSTNQAQAAPEE 170 180 190 200 210 220 40 50 60 70 80 90 pF1KB8 RPRS---RCLCRQHRPVQLCAPHRTCREALDVLAKTVAFLRNLPSFWQLPPQDQRRLLQG :::. ::: : .:. .:. : : ::. :.. :: : :: ..: :... CCDS14 RPRAPWWDTSSGALRPVALKSPQVVCEAASAGLLKTLRFVKYLPCFQVLPLDQQLVLVRN 230 240 250 260 270 280 100 110 120 130 pF1KB8 CWGPLFLLGLAQDAVTFEVAEAPVPSILKKILLEEPSSSGGSGQLP-------------D ::. :..: :::: . ::..:. ::.:.::: . .::. :: CCDS14 CWASLLMLELAQDRLQFETVEVSEPSMLQKILTTRRRETGGNEPLPVPTLQHHLAPPAEA 290 300 310 320 330 340 140 150 160 170 180 190 pF1KB8 RPQPSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVPGLQAASHIGHLQQEAHW : :: . :: ..: : . :::..: :::: ::::.:::::::::: ...: :: .. CCDS14 RKVPSASQVQAIKCFLSKCWSLNISTKEYAYLKGTVLFNPDVPGLQCVKYIQGLQWGTQQ 350 360 370 380 390 400 200 210 220 230 240 250 pF1KB8 VLCEVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPIIGDVDIAGLLGDMLLLR .: : . . . :. .. : :. : ......:::::::: :.. .. .:: CCDS14 ILSEHTRMTHQGPHDRFIELNSTLFLLRFINANVIAELFFRPIIGTVSMDDMMLEMLCTK 410 420 430 440 450 460 CCDS14 I 470 >>CCDS5063.1 NR2E1 gene_id:7101|Hs108|chr6 (385 aa) initn: 249 init1: 132 opt: 277 Z-score: 315.3 bits: 66.5 E(32554): 3e-11 Smith-Waterman score: 281; 31.6% identity (57.1% similar) in 212 aa overlap (51-253:181-379) 30 40 50 60 70 80 pF1KB8 LYALLSSSLKAVPRPRSRCLCRQHRPVQLCAPHRTCREALDVLAKTVAFLRNLPSFWQLP : . .:. : .: .. . ...:.: : CCDS50 PERQTLVSLAQPTPKYPHEVNGTPMYLYEVATESVCESAARLLFMSIKWAKSVPAFSTLS 160 170 180 190 200 210 90 100 110 120 130 140 pF1KB8 PQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVPSILKKILLEEPSSSGGSGQLPDRPQ ::: ::. : ::.::.:: :. :: . . :: . :: .:. : . CCDS50 LQDQLMLLEDAWRELFVLGIAQWAI-------PVDA---NTLL---AVSGMNGDNTDSQK 220 230 240 250 150 160 170 180 190 pF1KB8 PS--LAAVQWLQCCLESFWSLELSPKEYACLKGTILFN--PDVPG-----LQAASHIGHL . .. .: :: . : .:.:. :.:::: . :. : : .. :. :. : CCDS50 LNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIAAL 260 270 280 290 300 310 200 210 220 230 240 250 pF1KB8 QQEAHWVLCEVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPIIGDVDIAGLLG :.::. .: .. :. :. ..:: .:.:: : . ..::. ::.: :. ::. CCDS50 QDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRLLS 320 330 340 350 360 370 pF1KB8 DMLLLR :: CCDS50 DMYKSSDI 380 >>CCDS69165.1 NR2E1 gene_id:7101|Hs108|chr6 (422 aa) initn: 249 init1: 132 opt: 277 Z-score: 314.8 bits: 66.6 E(32554): 3.3e-11 Smith-Waterman score: 281; 31.6% identity (57.1% similar) in 212 aa overlap (51-253:218-416) 30 40 50 60 70 80 pF1KB8 LYALLSSSLKAVPRPRSRCLCRQHRPVQLCAPHRTCREALDVLAKTVAFLRNLPSFWQLP : . .:. : .: .. . ...:.: : CCDS69 PERQTLVSLAQPTPKYPHEVNGTPMYLYEVATESVCESAARLLFMSIKWAKSVPAFSTLS 190 200 210 220 230 240 90 100 110 120 130 140 pF1KB8 PQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVPSILKKILLEEPSSSGGSGQLPDRPQ ::: ::. : ::.::.:: :. :: . . :: . :: .:. : . CCDS69 LQDQLMLLEDAWRELFVLGIAQWAI-------PVDA---NTLL---AVSGMNGDNTDSQK 250 260 270 280 290 150 160 170 180 190 pF1KB8 PS--LAAVQWLQCCLESFWSLELSPKEYACLKGTILFN--PDVPG-----LQAASHIGHL . .. .: :: . : .:.:. :.:::: . :. : : .. :. :. : CCDS69 LNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIAAL 300 310 320 330 340 350 200 210 220 230 240 250 pF1KB8 QQEAHWVLCEVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPIIGDVDIAGLLG :.::. .: .. :. :. ..:: .:.:: : . ..::. ::.: :. ::. CCDS69 QDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRLLS 360 370 380 390 400 410 pF1KB8 DMLLLR :: CCDS69 DMYKSSDI 420 257 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 22:47:11 2016 done: Sat Nov 5 22:47:12 2016 Total Scan time: 2.480 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]