Result of FASTA (ccds) for
pFN21AE3105
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3105, 259 aa
1>>>pF1KE3105 259 - 259 aa - 259 aa
Library: human.CCDS.faa
18921897 residues in 33420 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0800+/-0.000676; mu= 16.8532+/- 0.041
mean_var=68.4231+/-13.533, 0's: 0 Z-trim(110.7): 54 B-trim: 11 in 1/51
Lambda= 0.155050
statistics sampled from 11913 (11967) to 11913 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.741), E-opt: 0.2 (0.358), width: 16
Scan time: 1.100
The best scores are: opt bits E(33420)
CCDS14.1 UBE2J2 gene_id:118424|Hs109|chr1 ( 259) 1751 399.9 9e-112
CCDS15.1 UBE2J2 gene_id:118424|Hs109|chr1 ( 275) 1456 334.0 6.9e-92
CCDS16.1 UBE2J2 gene_id:118424|Hs109|chr1 ( 207) 1397 320.7 5.2e-88
CCDS5021.1 UBE2J1 gene_id:51465|Hs109|chr6 ( 318) 454 109.9 2.3e-24
CCDS2282.1 UBE2E3 gene_id:10477|Hs109|chr2 ( 207) 270 68.6 4e-12
CCDS14580.1 UBE2A gene_id:7319|Hs109|chrX ( 152) 265 67.4 6.9e-12
CCDS4174.1 UBE2B gene_id:7320|Hs109|chr5 ( 152) 265 67.4 6.9e-12
CCDS2638.1 UBE2E1 gene_id:7324|Hs109|chr3 ( 193) 266 67.7 7.1e-12
CCDS2637.1 UBE2E2 gene_id:7325|Hs109|chr3 ( 201) 265 67.5 8.5e-12
CCDS56244.1 UBE2E1 gene_id:7324|Hs109|chr3 ( 160) 252 64.5 5.4e-11
CCDS5474.1 UBE2D4 gene_id:51619|Hs109|chr7 ( 147) 248 63.6 9.3e-11
>>CCDS14.1 UBE2J2 gene_id:118424|Hs109|chr1 (259 aa)
initn: 1751 init1: 1751 opt: 1751 Z-score: 2120.3 bits: 399.9 E(33420): 9e-112
Smith-Waterman score: 1751; 100.0% identity (100.0% similar) in 259 aa overlap (1-259:1-259)
10 20 30 40 50 60
pF1KE3 MSSTSSKRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MSSTSSKRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 YHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 YHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 FMVEKGPTLGSIETSDFTKRQLAVQSLAFNLKDKVFCELFPEVVEEIKQKQKAQDELSSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 FMVEKGPTLGSIETSDFTKRQLAVQSLAFNLKDKVFCELFPEVVEEIKQKQKAQDELSSR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 PQTLPLPDVVPDGETHLVQNGIQLLNGHAPGAVPNLAGLQQANRHHGLLGGALANLFVIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PQTLPLPDVVPDGETHLVQNGIQLLNGHAPGAVPNLAGLQQANRHHGLLGGALANLFVIV
190 200 210 220 230 240
250
pF1KE3 GFAAFAYTVKYVLRSIAQE
:::::::::::::::::::
CCDS14 GFAAFAYTVKYVLRSIAQE
250
>>CCDS15.1 UBE2J2 gene_id:118424|Hs109|chr1 (275 aa)
initn: 1737 init1: 1456 opt: 1456 Z-score: 1763.3 bits: 334.0 E(33420): 6.9e-92
Smith-Waterman score: 1709; 94.2% identity (94.2% similar) in 275 aa overlap (1-259:1-275)
10 20 30 40
pF1KE3 MSSTSSKRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEW----------------
::::::::::::::::::::::::::::::::::::::::::::
CCDS15 MSSTSSKRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWFKRFSWLSLLSSWDYR
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE3 HYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 HYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDT
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE3 WNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAVQSLAFNLKDKVFCELFPEVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 WNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAVQSLAFNLKDKVFCELFPEVV
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE3 EEIKQKQKAQDELSSRPQTLPLPDVVPDGETHLVQNGIQLLNGHAPGAVPNLAGLQQANR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 EEIKQKQKAQDELSSRPQTLPLPDVVPDGETHLVQNGIQLLNGHAPGAVPNLAGLQQANR
190 200 210 220 230 240
230 240 250
pF1KE3 HHGLLGGALANLFVIVGFAAFAYTVKYVLRSIAQE
:::::::::::::::::::::::::::::::::::
CCDS15 HHGLLGGALANLFVIVGFAAFAYTVKYVLRSIAQE
250 260 270
>>CCDS16.1 UBE2J2 gene_id:118424|Hs109|chr1 (207 aa)
initn: 1397 init1: 1397 opt: 1397 Z-score: 1693.7 bits: 320.7 E(33420): 5.2e-88
Smith-Waterman score: 1397; 100.0% identity (100.0% similar) in 207 aa overlap (53-259:1-207)
30 40 50 60 70 80
pF1KE3 RIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMIT
::::::::::::::::::::::::::::::
CCDS16 MTPYEGGYYHGKLIFPREFPFKPPSIYMIT
10 20 30
90 100 110 120 130 140
pF1KE3 PNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 PNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQL
40 50 60 70 80 90
150 160 170 180 190 200
pF1KE3 AVQSLAFNLKDKVFCELFPEVVEEIKQKQKAQDELSSRPQTLPLPDVVPDGETHLVQNGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 AVQSLAFNLKDKVFCELFPEVVEEIKQKQKAQDELSSRPQTLPLPDVVPDGETHLVQNGI
100 110 120 130 140 150
210 220 230 240 250
pF1KE3 QLLNGHAPGAVPNLAGLQQANRHHGLLGGALANLFVIVGFAAFAYTVKYVLRSIAQE
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 QLLNGHAPGAVPNLAGLQQANRHHGLLGGALANLFVIVGFAAFAYTVKYVLRSIAQE
160 170 180 190 200
>>CCDS5021.1 UBE2J1 gene_id:51465|Hs109|chr6 (318 aa)
initn: 416 init1: 416 opt: 454 Z-score: 551.1 bits: 109.9 E(33420): 2.3e-24
Smith-Waterman score: 454; 40.7% identity (73.3% similar) in 150 aa overlap (1-149:1-147)
10 20 30 40 50 60
pF1KE3 MSSTSSKRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGY
: . . ..: :..:: .. ..: ::. . :.:: .:..:::..:::: . ..::
CCDS50 METRYNLKSP--AVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGV
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 YHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLS
:::....: :.:.::::: ..: ::::. . ..::::. ::.::.:.::. : : ....
CCDS50 YHGRIVLPPEYPMKPPSIILLTANGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIG
60 70 80 90 100 110
130 140 150 160 170
pF1KE3 FMVEKGP-TLGSIETSDFTKRQLAVQSLAFNLKDKVFCELFPEVVEEIKQKQKAQDELSS
:: :: ..::.. . .: :: .: :
CCDS50 FMPTKGEGAIGSLDYTPEERRALAKKSQDFCCEGCGSAMKDVLLPLKSGSDSSQADQEAK
120 130 140 150 160 170
>>CCDS2282.1 UBE2E3 gene_id:10477|Hs109|chr2 (207 aa)
initn: 187 init1: 159 opt: 270 Z-score: 331.3 bits: 68.6 E(33420): 4e-12
Smith-Waterman score: 270; 32.0% identity (61.9% similar) in 147 aa overlap (1-140:51-191)
10 20 30
pF1KE3 MSSTSSKRAPTTATQRLKQDYLRIKKDPVP
.:: .. . :.: .:.... .: :: :
CCDS22 DADQRDPAAPEPEEQEERKPSATQQKKNTKLSSKTTAKLSTSA-KRIQKELAEITLDPPP
30 40 50 60 70
40 50 60 70 80 90
pF1KE3 YICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCN
: : .:: ::. .. :: . :::: . . : ..:::::.. . : ..::
CCDS22 NCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRI--YHCN
80 90 100 110 120 130
100 110 120 130 140
pF1KE3 TR----LCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPT---LGSIETSDFTKRQLA
.:: :. :.:.:: ..: .: .. :.... .:. .::: :. .:.:
CCDS22 INSQGVICL---DILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEH
140 150 160 170 180 190
150 160 170 180 190 200
pF1KE3 VQSLAFNLKDKVFCELFPEVVEEIKQKQKAQDELSSRPQTLPLPDVVPDGETHLVQNGIQ
CCDS22 DRIARQWTKRYAT
200
>>CCDS14580.1 UBE2A gene_id:7319|Hs109|chrX (152 aa)
initn: 243 init1: 192 opt: 265 Z-score: 327.1 bits: 67.4 E(33420): 6.9e-12
Smith-Waterman score: 265; 33.9% identity (65.3% similar) in 121 aa overlap (11-127:3-118)
10 20 30 40 50 60
pF1KE3 MSSTSSKRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGY
: : .:: .:. :...:: . . : .::. :. :. ::: ::.: :
CCDS14 MSTPARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGT
10 20 30 40 50
70 80 90 100 110
pF1KE3 YHGKLIFPREFPFKPPSIYMIT----PNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILT
.. . : .:.: :::.. ... :: . .::.: . . :.:...::.:::
CCDS14 FKLTIEFTEEYPNKPPTVRFVSKMFHPN--VYADGSICLDILQ---NRWSPTYDVSSILT
60 70 80 90 100
120 130 140 150 160 170
pF1KE3 GLLSFMVEKGPTLGSIETSDFTKRQLAVQSLAFNLKDKVFCELFPEVVEEIKQKQKAQDE
.. :.. : .:
CCDS14 SIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSWRDC
110 120 130 140 150
>>CCDS4174.1 UBE2B gene_id:7320|Hs109|chr5 (152 aa)
initn: 242 init1: 191 opt: 265 Z-score: 327.1 bits: 67.4 E(33420): 6.9e-12
Smith-Waterman score: 265; 34.7% identity (65.3% similar) in 121 aa overlap (11-127:3-118)
10 20 30 40 50 60
pF1KE3 MSSTSSKRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGY
: : .:: .:. :...:: . . : .::..:. :. ::: ::.: :
CCDS41 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGT
10 20 30 40 50
70 80 90 100 110
pF1KE3 YHGKLIFPREFPFKPPSIY----MITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILT
.. . : .:.: :::.. :. :: . .::.: . . :.:...::.:::
CCDS41 FKLVIEFSEEYPNKPPTVRFLSKMFHPN--VYADGSICLDILQ---NRWSPTYDVSSILT
60 70 80 90 100
120 130 140 150 160 170
pF1KE3 GLLSFMVEKGPTLGSIETSDFTKRQLAVQSLAFNLKDKVFCELFPEVVEEIKQKQKAQDE
.. :.. : .:
CCDS41 SIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSWNDS
110 120 130 140 150
>>CCDS2638.1 UBE2E1 gene_id:7324|Hs109|chr3 (193 aa)
initn: 210 init1: 161 opt: 266 Z-score: 326.9 bits: 67.7 E(33420): 7.1e-12
Smith-Waterman score: 266; 31.3% identity (62.6% similar) in 147 aa overlap (1-140:36-177)
10 20 30
pF1KE3 MSSTSSKRAPTTATQRLKQDYLRIKKDPVP
.: ..... .:...:.... : :: :
CCDS26 SRASTSSSSSSSSNQQTEKETNTPKKKESKVSMSKNSKLLSTSAKRIQKELADITLDPPP
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE3 YICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCN
: : .:: ::. .. :: . :::: . . : :.:::::.. . : ..::
CCDS26 NCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRI--YHCN
70 80 90 100 110 120
100 110 120 130 140
pF1KE3 TR----LCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPT---LGSIETSDFTKRQLA
.:: :. :.:.:: ..: .: .. :.... .:. .::: :. .:.:
CCDS26 INSQGVICL---DILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEH
130 140 150 160 170 180
150 160 170 180 190 200
pF1KE3 VQSLAFNLKDKVFCELFPEVVEEIKQKQKAQDELSSRPQTLPLPDVVPDGETHLVQNGIQ
CCDS26 DRMARQWTKRYAT
190
>>CCDS2637.1 UBE2E2 gene_id:7325|Hs109|chr3 (201 aa)
initn: 184 init1: 157 opt: 265 Z-score: 325.4 bits: 67.5 E(33420): 8.5e-12
Smith-Waterman score: 265; 33.1% identity (62.1% similar) in 145 aa overlap (5-140:46-185)
10 20 30
pF1KE3 MSSTSSKRAP--TTATQRLKQDYLRIKKDPVPYI
::: : .:...:.... .: :: :
CCDS26 GGSSDGDQRESVQQEPEREQVQPKKKEGKISSKTAAKLSTSAKRIQKELAEITLDPPPNC
20 30 40 50 60 70
40 50 60 70 80 90
pF1KE3 CAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTR
: : .:: ::. .. :: . :::: . . : ..:::::.. . : ..::
CCDS26 SAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRI--YHCNIN
80 90 100 110 120 130
100 110 120 130 140
pF1KE3 ----LCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPT---LGSIETSDFTKRQLAVQ
.:: :. :.:.:: ..: .: .. :.... .:. .::: :. .:.:
CCDS26 SQGVICL---DILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDR
140 150 160 170 180 190
150 160 170 180 190 200
pF1KE3 SLAFNLKDKVFCELFPEVVEEIKQKQKAQDELSSRPQTLPLPDVVPDGETHLVQNGIQLL
CCDS26 MARQWTKRYAT
200
>>CCDS56244.1 UBE2E1 gene_id:7324|Hs109|chr3 (160 aa)
initn: 188 init1: 161 opt: 252 Z-score: 311.1 bits: 64.5 E(33420): 5.4e-11
Smith-Waterman score: 252; 33.3% identity (60.6% similar) in 132 aa overlap (16-140:18-144)
10 20 30 40 50
pF1KE3 MSSTSSKRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEG
:.... : :: : : : .:: ::. .. :: . :::
CCDS56 MKEVGRPREVRGRPGKSRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 GYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTR----LCLSITDFHPDTWNPAWSVSTI
: . . : :.:::::.. . : ..:: .:: :. :.:.:: ..: .
CCDS56 GVFFLDITFTPEYPFKPPKVTFRTRI--YHCNINSQGVICL---DILKDNWSPALTISKV
70 80 90 100 110
120 130 140 150 160 170
pF1KE3 LTGLLSFMVEKGPT---LGSIETSDFTKRQLAVQSLAFNLKDKVFCELFPEVVEEIKQKQ
: .. :.... .:. .::: :. .:.:
CCDS56 LLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT
120 130 140 150 160
259 residues in 1 query sequences
18921897 residues in 33420 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Jul 3 20:39:40 2020 done: Fri Jul 3 20:39:40 2020
Total Scan time: 1.100 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]