FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5366, 190 aa 1>>>pF1KE5366 190 - 190 aa - 190 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0211+/-0.000365; mu= 14.4440+/- 0.023 mean_var=64.3858+/-12.191, 0's: 0 Z-trim(113.6): 20 B-trim: 0 in 0/51 Lambda= 0.159838 statistics sampled from 22929 (22946) to 22929 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.659), E-opt: 0.2 (0.269), width: 16 Scan time: 4.430 The best scores are: opt bits E(85289) NP_008831 (OMIM: 147578) interferon alpha-1/13 pre ( 190) 1253 297.4 9.2e-81 NP_076918 (OMIM: 147660) interferon alpha-1/13 pre ( 189) 1251 296.9 1.3e-80 NP_002160 (OMIM: 147565) interferon alpha-5 precur ( 189) 1064 253.8 1.2e-67 NP_066282 (OMIM: 147566) interferon alpha-6 precur ( 189) 1037 247.6 9e-66 NP_002163 (OMIM: 147579) interferon alpha-14 precu ( 189) 1033 246.7 1.7e-65 NP_002166 (OMIM: 147584) interferon alpha-21 precu ( 189) 1001 239.3 2.8e-63 NP_066546 (OMIM: 147564) interferon alpha-4 precur ( 189) 995 237.9 7.4e-63 NP_000596 (OMIM: 147562) interferon alpha-2 precur ( 188) 994 237.7 8.7e-63 NP_067091 (OMIM: 147583) interferon alpha-17 precu ( 189) 985 235.6 3.7e-62 NP_002162 (OMIM: 147577) interferon alpha-10 precu ( 189) 985 235.6 3.7e-62 NP_066401 (OMIM: 147567) interferon alpha-7 precur ( 189) 958 229.4 2.7e-60 NP_002164 (OMIM: 147580) interferon alpha-16 precu ( 189) 939 225.0 5.7e-59 NP_002161 (OMIM: 147568) interferon alpha-8 precur ( 189) 917 219.9 1.9e-57 NP_002168 (OMIM: 147553) interferon omega-1 precur ( 195) 667 162.3 4.5e-40 NP_795372 (OMIM: 615223) interferon epsilon precur ( 208) 383 96.8 2.4e-20 NP_002167 (OMIM: 147640) interferon beta precursor ( 187) 310 79.9 2.6e-15 NP_064509 (OMIM: 615326) interferon kappa precurso ( 207) 162 45.8 5.3e-05 >>NP_008831 (OMIM: 147578) interferon alpha-1/13 precurs (190 aa) initn: 1253 init1: 1253 opt: 1253 Z-score: 1571.0 bits: 297.4 E(85289): 9.2e-81 Smith-Waterman score: 1253; 99.5% identity (100.0% similar) in 190 aa overlap (1-190:1-190) 10 20 30 40 50 60 pF1KE5 MMASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF ::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 MMASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST 130 140 150 160 170 180 190 pF1KE5 NLQERLRRKE :::::::::: NP_008 NLQERLRRKE 190 >>NP_076918 (OMIM: 147660) interferon alpha-1/13 precurs (189 aa) initn: 1251 init1: 1251 opt: 1251 Z-score: 1568.5 bits: 296.9 E(85289): 1.3e-80 Smith-Waterman score: 1251; 100.0% identity (100.0% similar) in 189 aa overlap (2-190:1-189) 10 20 30 40 50 60 pF1KE5 MMASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_076 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF 10 20 30 40 50 70 80 90 100 110 120 pF1KE5 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_076 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE5 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_076 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST 120 130 140 150 160 170 190 pF1KE5 NLQERLRRKE :::::::::: NP_076 NLQERLRRKE 180 >>NP_002160 (OMIM: 147565) interferon alpha-5 precursor (189 aa) initn: 1064 init1: 1064 opt: 1064 Z-score: 1335.4 bits: 253.8 E(85289): 1.2e-67 Smith-Waterman score: 1064; 84.1% identity (94.2% similar) in 189 aa overlap (2-190:1-189) 10 20 30 40 50 60 pF1KE5 MMASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF :: ::.:::.::::.::: ::::::::.::::.::::::..:::.:::: ::: ::::: NP_002 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDF 10 20 30 40 50 70 80 90 100 110 120 pF1KE5 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL ::::::::::::::: :::::::.::: ::::.::::::.::: ::::: :::::::::: NP_002 GFPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDL 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE5 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST :::.::: : .:::::.::::.:.:::.::::::::::::::::::::::::::.:::. NP_002 EACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSA 120 130 140 150 160 170 190 pF1KE5 NLQERLRRKE :::::::::: NP_002 NLQERLRRKE 180 >>NP_066282 (OMIM: 147566) interferon alpha-6 precursor (189 aa) initn: 1037 init1: 1037 opt: 1037 Z-score: 1301.8 bits: 247.6 E(85289): 9e-66 Smith-Waterman score: 1037; 84.7% identity (90.5% similar) in 189 aa overlap (2-190:1-189) 10 20 30 40 50 60 pF1KE5 MMASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF :: ::::::.:::::::::::: ::::.:::: .:::.:::::: ::: ::: ::::: NP_066 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDF 10 20 30 40 50 70 80 90 100 110 120 pF1KE5 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL :::::::::::::: :::::::.::: ::::.:::::.:::: ::::. :::::::::: NP_066 RFPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDL 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE5 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST ::::::: :: ::::: ::::::.:::.::::::::::::::::::::::::::.: : NP_066 EACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSR 120 130 140 150 160 170 190 pF1KE5 NLQERLRRKE :::::::::: NP_066 NLQERLRRKE 180 >>NP_002163 (OMIM: 147579) interferon alpha-14 precursor (189 aa) initn: 1092 init1: 1033 opt: 1033 Z-score: 1296.8 bits: 246.7 E(85289): 1.7e-65 Smith-Waterman score: 1033; 82.0% identity (91.5% similar) in 189 aa overlap (2-190:1-189) 10 20 30 40 50 60 pF1KE5 MMASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF :: ::::.:.::::::::::::::.: .::::.:::::::.::: :::: ::: ::::: NP_002 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDF 10 20 30 40 50 70 80 90 100 110 120 pF1KE5 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL :::::::::::::: :::::::..:: ::::.::.::::::: ::.:: ::.::.::: NP_002 EFPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDL 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE5 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST ::::.:: : :::::: ::::::::::.:::::: :::::::::::::::::::::.:: NP_002 EACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFST 120 130 140 150 160 170 190 pF1KE5 NLQERLRRKE :::.:::::. NP_002 NLQKRLRRKD 180 >>NP_002166 (OMIM: 147584) interferon alpha-21 precursor (189 aa) initn: 1001 init1: 1001 opt: 1001 Z-score: 1256.9 bits: 239.3 E(85289): 2.8e-63 Smith-Waterman score: 1001; 81.0% identity (91.5% similar) in 189 aa overlap (2-190:1-189) 10 20 30 40 50 60 pF1KE5 MMASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF :: :.:::...::: :: ::::::::.:::: :::.:.:::::.:::: ::: ::::: NP_002 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDF 10 20 30 40 50 70 80 90 100 110 120 pF1KE5 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL ::::::::::::::: :::::::.::: ::::.::::::.:...::.:: ::: :::::: NP_002 GFPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDL 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE5 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST ::::.:: : ::::::.::::::::::.::::::::::::::::::::::::::.::: NP_002 EACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSK 120 130 140 150 160 170 190 pF1KE5 NLQERLRRKE .:::::::: NP_002 IFQERLRRKE 180 >>NP_066546 (OMIM: 147564) interferon alpha-4 precursor (189 aa) initn: 1010 init1: 995 opt: 995 Z-score: 1249.5 bits: 237.9 E(85289): 7.4e-63 Smith-Waterman score: 995; 79.9% identity (92.1% similar) in 189 aa overlap (2-190:1-189) 10 20 30 40 50 60 pF1KE5 MMASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF :: :.:::...::: :: ::::::::.:::: :::.:.:::::.::: ::: ::::: NP_066 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDF 10 20 30 40 50 70 80 90 100 110 120 pF1KE5 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL :::.:::::.::::: :::::::.::: ::::.:.::::::...::.:: :::::::::: NP_066 GFPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDL 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE5 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST ::::.:: : :::::: ::::::.:::.::::::::::::::::::::::::::::.:: NP_066 EACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFST 120 130 140 150 160 170 190 pF1KE5 NLQERLRRKE :::.:::::. NP_066 NLQKRLRRKD 180 >>NP_000596 (OMIM: 147562) interferon alpha-2 precursor (188 aa) initn: 992 init1: 650 opt: 994 Z-score: 1248.2 bits: 237.7 E(85289): 8.7e-63 Smith-Waterman score: 994; 82.0% identity (89.4% similar) in 189 aa overlap (2-190:1-188) 10 20 30 40 50 60 pF1KE5 MMASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF :: ::::..:.:::::::::.:::::.:::: .:::::::::: ::: ::: ::::: NP_000 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDF 10 20 30 40 50 70 80 90 100 110 120 pF1KE5 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL ::::::: ::::::: .: ::::.::::::::.:::::::::: ::::: :::::::::: NP_000 GFPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDL 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE5 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST ::::.: : :::::. ::::::.:::.:::::: :::::::::::::::::::.:::: NP_000 EACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLST 120 130 140 150 160 170 190 pF1KE5 NLQERLRRKE :::: :: :: NP_000 NLQESLRSKE 180 >>NP_067091 (OMIM: 147583) interferon alpha-17 precursor (189 aa) initn: 1005 init1: 985 opt: 985 Z-score: 1237.0 bits: 235.6 E(85289): 3.7e-62 Smith-Waterman score: 985; 78.8% identity (92.1% similar) in 189 aa overlap (2-190:1-189) 10 20 30 40 50 60 pF1KE5 MMASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF :: :.:::...::: :: ::::::::.:::: :::.:.:::::.:::: ::: ::::: NP_067 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDF 10 20 30 40 50 70 80 90 100 110 120 pF1KE5 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL :.::::::::::::. :::::::.::: ::::.:.::::::...::.:: ::::::::.: NP_067 GLPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNL 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE5 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST ::::.:: . :::::: ::::::.:::.::::::::::::::::::::::::::::.:: NP_067 EACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFST 120 130 140 150 160 170 190 pF1KE5 NLQERLRRKE :::. ::::. NP_067 NLQKILRRKD 180 >>NP_002162 (OMIM: 147577) interferon alpha-10 precursor (189 aa) initn: 1000 init1: 985 opt: 985 Z-score: 1237.0 bits: 235.6 E(85289): 3.7e-62 Smith-Waterman score: 985; 78.8% identity (91.5% similar) in 189 aa overlap (2-190:1-189) 10 20 30 40 50 60 pF1KE5 MMASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF :: :.:::...::: :: ::::::::.:::: :::.:.::.::.:::: ::: ::::: NP_002 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDF 10 20 30 40 50 70 80 90 100 110 120 pF1KE5 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL .::::::::::::: :::::::.::: ::::.:.::::::...::.:: :::::::::: NP_002 RIPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDL 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE5 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST ::::.:: : :::::: ::::::.:::.:::::: :.:::::::::::::::::::.:: NP_002 EACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFST 120 130 140 150 160 170 190 pF1KE5 NLQERLRRKE :::.:::::. NP_002 NLQKRLRRKD 180 190 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 00:09:10 2016 done: Tue Nov 8 00:09:10 2016 Total Scan time: 4.430 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]