FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5366, 190 aa 1>>>pF1KE5366 190 - 190 aa - 190 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0440+/-0.000803; mu= 14.4282+/- 0.048 mean_var=62.7508+/-12.009, 0's: 0 Z-trim(107.0): 21 B-trim: 68 in 1/50 Lambda= 0.161907 statistics sampled from 9286 (9304) to 9286 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.677), E-opt: 0.2 (0.286), width: 16 Scan time: 1.670 The best scores are: opt bits E(32554) CCDS6505.2 IFNA13 gene_id:3447|Hs108|chr9 ( 190) 1253 300.9 3.1e-82 CCDS6508.1 IFNA1 gene_id:3439|Hs108|chr9 ( 189) 1251 300.4 4.2e-82 CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 ( 189) 1064 256.8 6e-69 CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9 ( 189) 1037 250.5 4.7e-67 CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 ( 189) 1033 249.5 9e-67 CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 ( 189) 1001 242.0 1.6e-64 CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 ( 189) 995 240.6 4.2e-64 CCDS6506.1 IFNA2 gene_id:3440|Hs108|chr9 ( 188) 994 240.4 5e-64 CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 ( 189) 985 238.3 2.1e-63 CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 ( 189) 985 238.3 2.1e-63 CCDS34995.1 IFNA7 gene_id:3444|Hs108|chr9 ( 189) 958 232.0 1.7e-61 CCDS34996.1 IFNA16 gene_id:3449|Hs108|chr9 ( 189) 939 227.6 3.7e-60 CCDS6507.1 IFNA8 gene_id:3445|Hs108|chr9 ( 189) 917 222.4 1.3e-58 CCDS6496.1 IFNW1 gene_id:3467|Hs108|chr9 ( 195) 667 164.0 5e-41 CCDS34997.1 IFNE gene_id:338376|Hs108|chr9 ( 208) 383 97.7 5e-21 CCDS6495.1 IFNB1 gene_id:3456|Hs108|chr9 ( 187) 310 80.6 6.2e-16 >>CCDS6505.2 IFNA13 gene_id:3447|Hs108|chr9 (190 aa) initn: 1253 init1: 1253 opt: 1253 Z-score: 1589.9 bits: 300.9 E(32554): 3.1e-82 Smith-Waterman score: 1253; 99.5% identity (100.0% similar) in 190 aa overlap (1-190:1-190) 10 20 30 40 50 60 pF1KE5 MMASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF ::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 MMASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST 130 140 150 160 170 180 190 pF1KE5 NLQERLRRKE :::::::::: CCDS65 NLQERLRRKE 190 >>CCDS6508.1 IFNA1 gene_id:3439|Hs108|chr9 (189 aa) initn: 1251 init1: 1251 opt: 1251 Z-score: 1587.4 bits: 300.4 E(32554): 4.2e-82 Smith-Waterman score: 1251; 100.0% identity (100.0% similar) in 189 aa overlap (2-190:1-189) 10 20 30 40 50 60 pF1KE5 MMASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF 10 20 30 40 50 70 80 90 100 110 120 pF1KE5 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE5 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS65 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST 120 130 140 150 160 170 190 pF1KE5 NLQERLRRKE :::::::::: CCDS65 NLQERLRRKE 180 >>CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 (189 aa) initn: 1064 init1: 1064 opt: 1064 Z-score: 1351.3 bits: 256.8 E(32554): 6e-69 Smith-Waterman score: 1064; 84.1% identity (94.2% similar) in 189 aa overlap (2-190:1-189) 10 20 30 40 50 60 pF1KE5 MMASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF :: ::.:::.::::.::: ::::::::.::::.::::::..:::.:::: ::: ::::: CCDS65 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDF 10 20 30 40 50 70 80 90 100 110 120 pF1KE5 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL ::::::::::::::: :::::::.::: ::::.::::::.::: ::::: :::::::::: CCDS65 GFPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDL 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE5 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST :::.::: : .:::::.::::.:.:::.::::::::::::::::::::::::::.:::. CCDS65 EACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSA 120 130 140 150 160 170 190 pF1KE5 NLQERLRRKE :::::::::: CCDS65 NLQERLRRKE 180 >>CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9 (189 aa) initn: 1037 init1: 1037 opt: 1037 Z-score: 1317.3 bits: 250.5 E(32554): 4.7e-67 Smith-Waterman score: 1037; 84.7% identity (90.5% similar) in 189 aa overlap (2-190:1-189) 10 20 30 40 50 60 pF1KE5 MMASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF :: ::::::.:::::::::::: ::::.:::: .:::.:::::: ::: ::: ::::: CCDS65 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDF 10 20 30 40 50 70 80 90 100 110 120 pF1KE5 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL :::::::::::::: :::::::.::: ::::.:::::.:::: ::::. :::::::::: CCDS65 RFPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDL 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE5 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST ::::::: :: ::::: ::::::.:::.::::::::::::::::::::::::::.: : CCDS65 EACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSR 120 130 140 150 160 170 190 pF1KE5 NLQERLRRKE :::::::::: CCDS65 NLQERLRRKE 180 >>CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 (189 aa) initn: 1092 init1: 1033 opt: 1033 Z-score: 1312.2 bits: 249.5 E(32554): 9e-67 Smith-Waterman score: 1033; 82.0% identity (91.5% similar) in 189 aa overlap (2-190:1-189) 10 20 30 40 50 60 pF1KE5 MMASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF :: ::::.:.::::::::::::::.: .::::.:::::::.::: :::: ::: ::::: CCDS65 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDF 10 20 30 40 50 70 80 90 100 110 120 pF1KE5 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL :::::::::::::: :::::::..:: ::::.::.::::::: ::.:: ::.::.::: CCDS65 EFPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDL 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE5 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST ::::.:: : :::::: ::::::::::.:::::: :::::::::::::::::::::.:: CCDS65 EACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFST 120 130 140 150 160 170 190 pF1KE5 NLQERLRRKE :::.:::::. CCDS65 NLQKRLRRKD 180 >>CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 (189 aa) initn: 1001 init1: 1001 opt: 1001 Z-score: 1271.8 bits: 242.0 E(32554): 1.6e-64 Smith-Waterman score: 1001; 81.0% identity (91.5% similar) in 189 aa overlap (2-190:1-189) 10 20 30 40 50 60 pF1KE5 MMASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF :: :.:::...::: :: ::::::::.:::: :::.:.:::::.:::: ::: ::::: CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDF 10 20 30 40 50 70 80 90 100 110 120 pF1KE5 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL ::::::::::::::: :::::::.::: ::::.::::::.:...::.:: ::: :::::: CCDS64 GFPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDL 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE5 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST ::::.:: : ::::::.::::::::::.::::::::::::::::::::::::::.::: CCDS64 EACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSK 120 130 140 150 160 170 190 pF1KE5 NLQERLRRKE .:::::::: CCDS64 IFQERLRRKE 180 >>CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 (189 aa) initn: 1010 init1: 995 opt: 995 Z-score: 1264.2 bits: 240.6 E(32554): 4.2e-64 Smith-Waterman score: 995; 79.9% identity (92.1% similar) in 189 aa overlap (2-190:1-189) 10 20 30 40 50 60 pF1KE5 MMASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF :: :.:::...::: :: ::::::::.:::: :::.:.:::::.::: ::: ::::: CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDF 10 20 30 40 50 70 80 90 100 110 120 pF1KE5 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL :::.:::::.::::: :::::::.::: ::::.:.::::::...::.:: :::::::::: CCDS64 GFPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDL 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE5 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST ::::.:: : :::::: ::::::.:::.::::::::::::::::::::::::::::.:: CCDS64 EACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFST 120 130 140 150 160 170 190 pF1KE5 NLQERLRRKE :::.:::::. CCDS64 NLQKRLRRKD 180 >>CCDS6506.1 IFNA2 gene_id:3440|Hs108|chr9 (188 aa) initn: 992 init1: 650 opt: 994 Z-score: 1263.0 bits: 240.4 E(32554): 5e-64 Smith-Waterman score: 994; 82.0% identity (89.4% similar) in 189 aa overlap (2-190:1-188) 10 20 30 40 50 60 pF1KE5 MMASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF :: ::::..:.:::::::::.:::::.:::: .:::::::::: ::: ::: ::::: CCDS65 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDF 10 20 30 40 50 70 80 90 100 110 120 pF1KE5 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL ::::::: ::::::: .: ::::.::::::::.:::::::::: ::::: :::::::::: CCDS65 GFPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDL 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE5 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST ::::.: : :::::. ::::::.:::.:::::: :::::::::::::::::::.:::: CCDS65 EACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLST 120 130 140 150 160 170 190 pF1KE5 NLQERLRRKE :::: :: :: CCDS65 NLQESLRSKE 180 >>CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 (189 aa) initn: 1005 init1: 985 opt: 985 Z-score: 1251.6 bits: 238.3 E(32554): 2.1e-63 Smith-Waterman score: 985; 78.8% identity (92.1% similar) in 189 aa overlap (2-190:1-189) 10 20 30 40 50 60 pF1KE5 MMASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF :: :.:::...::: :: ::::::::.:::: :::.:.:::::.:::: ::: ::::: CCDS65 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDF 10 20 30 40 50 70 80 90 100 110 120 pF1KE5 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL :.::::::::::::. :::::::.::: ::::.:.::::::...::.:: ::::::::.: CCDS65 GLPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNL 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE5 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST ::::.:: . :::::: ::::::.:::.::::::::::::::::::::::::::::.:: CCDS65 EACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFST 120 130 140 150 160 170 190 pF1KE5 NLQERLRRKE :::. ::::. CCDS65 NLQKILRRKD 180 >>CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 (189 aa) initn: 1000 init1: 985 opt: 985 Z-score: 1251.6 bits: 238.3 E(32554): 2.1e-63 Smith-Waterman score: 985; 78.8% identity (91.5% similar) in 189 aa overlap (2-190:1-189) 10 20 30 40 50 60 pF1KE5 MMASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDF :: :.:::...::: :: ::::::::.:::: :::.:.::.::.:::: ::: ::::: CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDF 10 20 30 40 50 70 80 90 100 110 120 pF1KE5 GFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDL .::::::::::::: :::::::.::: ::::.:.::::::...::.:: :::::::::: CCDS64 RIPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDL 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE5 EACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLST ::::.:: : :::::: ::::::.:::.:::::: :.:::::::::::::::::::.:: CCDS64 EACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFST 120 130 140 150 160 170 190 pF1KE5 NLQERLRRKE :::.:::::. CCDS64 NLQKRLRRKD 180 190 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 00:09:09 2016 done: Tue Nov 8 00:09:09 2016 Total Scan time: 1.670 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]