Result of FASTA (omim) for pFN21AE5296
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5296, 174 aa
  1>>>pF1KE5296 174 - 174 aa - 174 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4291+/-0.000335; mu= 12.5865+/- 0.021
 mean_var=74.9886+/-14.859, 0's: 0 Z-trim(116.6): 42  B-trim: 352 in 1/49
 Lambda= 0.148107
 statistics sampled from 27790 (27832) to 27790 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.326), width:  16
 Scan time:  5.180

The best scores are:                                      opt bits E(85289)
NP_783653 (OMIM: 274500,606765) thyroid peroxidase ( 760) 1035 230.2 5.6e-60
XP_011508683 (OMIM: 274500,606765) PREDICTED: thyr ( 832) 1035 230.3   6e-60
NP_783650 (OMIM: 274500,606765) thyroid peroxidase ( 876) 1035 230.3 6.3e-60
NP_001193674 (OMIM: 274500,606765) thyroid peroxid ( 876) 1035 230.3 6.3e-60
NP_783652 (OMIM: 274500,606765) thyroid peroxidase ( 889) 1035 230.3 6.3e-60
XP_011508682 (OMIM: 274500,606765) PREDICTED: thyr ( 929) 1035 230.3 6.6e-60
NP_000538 (OMIM: 274500,606765) thyroid peroxidase ( 933) 1035 230.3 6.6e-60
NP_001193673 (OMIM: 274500,606765) thyroid peroxid ( 933) 1035 230.3 6.6e-60
XP_011508681 (OMIM: 274500,606765) PREDICTED: thyr ( 935) 1035 230.3 6.6e-60
NP_000241 (OMIM: 104300,254600,606989) myeloperoxi ( 745)  232 58.6 2.5e-08
NP_000493 (OMIM: 131399,261500) eosinophil peroxid ( 715)  215 55.0 2.9e-07
XP_016868530 (OMIM: 615904) PREDICTED: peroxidasin (1328)  211 54.3 8.8e-07
XP_011515760 (OMIM: 615904) PREDICTED: peroxidasin (1328)  211 54.3 8.8e-07
XP_006716483 (OMIM: 615904) PREDICTED: peroxidasin (1367)  211 54.3   9e-07
XP_011515758 (OMIM: 615904) PREDICTED: peroxidasin (1439)  211 54.3 9.4e-07
XP_011515759 (OMIM: 615904) PREDICTED: peroxidasin (1439)  211 54.3 9.4e-07
NP_653252 (OMIM: 615904) peroxidasin-like protein  (1463)  211 54.3 9.5e-07
XP_011508698 (OMIM: 269400,605158) PREDICTED: pero (1296)  195 50.9 9.2e-06
XP_011508699 (OMIM: 269400,605158) PREDICTED: pero (1296)  195 50.9 9.2e-06
XP_005264764 (OMIM: 269400,605158) PREDICTED: pero (1455)  195 50.9   1e-05
NP_036425 (OMIM: 269400,605158) peroxidasin homolo (1479)  195 50.9   1e-05
XP_005251225 (OMIM: 615904) PREDICTED: peroxidasin ( 848)  178 47.1 8.1e-05


>>NP_783653 (OMIM: 274500,606765) thyroid peroxidase iso  (760 aa)
 initn: 1035 init1: 1035 opt: 1035  Z-score: 1197.8  bits: 230.2 E(85289): 5.6e-60
Smith-Waterman score: 1035; 99.4% identity (99.4% similar) in 161 aa overlap (1-161:1-161)

               10        20        30        40        50        60
pF1KE5 MRALAVLSVTLVMACTEAFFPFISRGKELLWGKPEESRVSSVLEESKRLVDTAMYATMQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_783 MRALAVLSVTLVMACTEAFFPFISRGKELLWGKPEESRVSSVLEESKRLVDTAMYATMQR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 NLKKRGILSAAQLLSFSKLPEPTSGVIARAAEIMETSIQAMKRKVNLKTQQSQHPTDALS
       ::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_783 NLKKRGILSPAQLLSFSKLPEPTSGVIARAAEIMETSIQAMKRKVNLKTQQSQHPTDALS
               70        80        90       100       110       120

              130       140       150       160       170          
pF1KE5 EDLLSIIANMSGCLPYMLPPKCPNTCLANKYRPITGACNNRKMKYKPDHSETAN      
       :::::::::::::::::::::::::::::::::::::::::                   
NP_783 EDLLSIIANMSGCLPYMLPPKCPNTCLANKYRPITGACNNRDHPRWGASNTALARWLPPV
              130       140       150       160       170       180

NP_783 YEDGFSQPRGWNPGFLYNGFPLPPVREVTRHVIQVSNEVVTDDDRYSDLLMAWGQYIDHD
              190       200       210       220       230       240

>>XP_011508683 (OMIM: 274500,606765) PREDICTED: thyroid   (832 aa)
 initn: 1035 init1: 1035 opt: 1035  Z-score: 1197.2  bits: 230.3 E(85289): 6e-60
Smith-Waterman score: 1035; 99.4% identity (99.4% similar) in 161 aa overlap (1-161:1-161)

               10        20        30        40        50        60
pF1KE5 MRALAVLSVTLVMACTEAFFPFISRGKELLWGKPEESRVSSVLEESKRLVDTAMYATMQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MRALAVLSVTLVMACTEAFFPFISRGKELLWGKPEESRVSSVLEESKRLVDTAMYATMQR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 NLKKRGILSAAQLLSFSKLPEPTSGVIARAAEIMETSIQAMKRKVNLKTQQSQHPTDALS
       ::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NLKKRGILSPAQLLSFSKLPEPTSGVIARAAEIMETSIQAMKRKVNLKTQQSQHPTDALS
               70        80        90       100       110       120

              130       140       150       160       170          
pF1KE5 EDLLSIIANMSGCLPYMLPPKCPNTCLANKYRPITGACNNRKMKYKPDHSETAN      
       :::::::::::::::::::::::::::::::::::::::::                   
XP_011 EDLLSIIANMSGCLPYMLPPKCPNTCLANKYRPITGACNNRDHPRWGASNTALARWLPPV
              130       140       150       160       170       180

XP_011 YEDGFSQPRGWNPGFLYNGFPLPPVREVTRHVIQVSNEVVTDDDRYSDLLMAWGQYIDHD
              190       200       210       220       230       240

>>NP_783650 (OMIM: 274500,606765) thyroid peroxidase iso  (876 aa)
 initn: 1035 init1: 1035 opt: 1035  Z-score: 1196.9  bits: 230.3 E(85289): 6.3e-60
Smith-Waterman score: 1035; 99.4% identity (99.4% similar) in 161 aa overlap (1-161:1-161)

               10        20        30        40        50        60
pF1KE5 MRALAVLSVTLVMACTEAFFPFISRGKELLWGKPEESRVSSVLEESKRLVDTAMYATMQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_783 MRALAVLSVTLVMACTEAFFPFISRGKELLWGKPEESRVSSVLEESKRLVDTAMYATMQR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 NLKKRGILSAAQLLSFSKLPEPTSGVIARAAEIMETSIQAMKRKVNLKTQQSQHPTDALS
       ::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_783 NLKKRGILSPAQLLSFSKLPEPTSGVIARAAEIMETSIQAMKRKVNLKTQQSQHPTDALS
               70        80        90       100       110       120

              130       140       150       160       170          
pF1KE5 EDLLSIIANMSGCLPYMLPPKCPNTCLANKYRPITGACNNRKMKYKPDHSETAN      
       :::::::::::::::::::::::::::::::::::::::::                   
NP_783 EDLLSIIANMSGCLPYMLPPKCPNTCLANKYRPITGACNNRDHPRWGASNTALARWLPPV
              130       140       150       160       170       180

NP_783 YEDGFSQPRGWNPGFLYNGFPLPPVREVTRHVIQVSNEVVTDDDRYSDLLMAWGQYIDHD
              190       200       210       220       230       240

>>NP_001193674 (OMIM: 274500,606765) thyroid peroxidase   (876 aa)
 initn: 1035 init1: 1035 opt: 1035  Z-score: 1196.9  bits: 230.3 E(85289): 6.3e-60
Smith-Waterman score: 1035; 99.4% identity (99.4% similar) in 161 aa overlap (1-161:1-161)

               10        20        30        40        50        60
pF1KE5 MRALAVLSVTLVMACTEAFFPFISRGKELLWGKPEESRVSSVLEESKRLVDTAMYATMQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MRALAVLSVTLVMACTEAFFPFISRGKELLWGKPEESRVSSVLEESKRLVDTAMYATMQR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 NLKKRGILSAAQLLSFSKLPEPTSGVIARAAEIMETSIQAMKRKVNLKTQQSQHPTDALS
       ::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NLKKRGILSPAQLLSFSKLPEPTSGVIARAAEIMETSIQAMKRKVNLKTQQSQHPTDALS
               70        80        90       100       110       120

              130       140       150       160       170          
pF1KE5 EDLLSIIANMSGCLPYMLPPKCPNTCLANKYRPITGACNNRKMKYKPDHSETAN      
       :::::::::::::::::::::::::::::::::::::::::                   
NP_001 EDLLSIIANMSGCLPYMLPPKCPNTCLANKYRPITGACNNRDHPRWGASNTALARWLPPV
              130       140       150       160       170       180

NP_001 YEDGFSQPRGWNPGFLYNGFPLPPVREVTRHVIQVSNEVVTDDDRYSDLLMAWGQYIDHD
              190       200       210       220       230       240

>>NP_783652 (OMIM: 274500,606765) thyroid peroxidase iso  (889 aa)
 initn: 1035 init1: 1035 opt: 1035  Z-score: 1196.8  bits: 230.3 E(85289): 6.3e-60
Smith-Waterman score: 1035; 99.4% identity (99.4% similar) in 161 aa overlap (1-161:1-161)

               10        20        30        40        50        60
pF1KE5 MRALAVLSVTLVMACTEAFFPFISRGKELLWGKPEESRVSSVLEESKRLVDTAMYATMQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_783 MRALAVLSVTLVMACTEAFFPFISRGKELLWGKPEESRVSSVLEESKRLVDTAMYATMQR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 NLKKRGILSAAQLLSFSKLPEPTSGVIARAAEIMETSIQAMKRKVNLKTQQSQHPTDALS
       ::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_783 NLKKRGILSPAQLLSFSKLPEPTSGVIARAAEIMETSIQAMKRKVNLKTQQSQHPTDALS
               70        80        90       100       110       120

              130       140       150       160       170          
pF1KE5 EDLLSIIANMSGCLPYMLPPKCPNTCLANKYRPITGACNNRKMKYKPDHSETAN      
       :::::::::::::::::::::::::::::::::::::::::                   
NP_783 EDLLSIIANMSGCLPYMLPPKCPNTCLANKYRPITGACNNRDHPRWGASNTALARWLPPV
              130       140       150       160       170       180

NP_783 YEDGFSQPRGWNPGFLYNGFPLPPVREVTRHVIQVSNEVVTDDDRYSDLLMAWGQYIDHD
              190       200       210       220       230       240

>>XP_011508682 (OMIM: 274500,606765) PREDICTED: thyroid   (929 aa)
 initn: 1035 init1: 1035 opt: 1035  Z-score: 1196.6  bits: 230.3 E(85289): 6.6e-60
Smith-Waterman score: 1035; 99.4% identity (99.4% similar) in 161 aa overlap (1-161:1-161)

               10        20        30        40        50        60
pF1KE5 MRALAVLSVTLVMACTEAFFPFISRGKELLWGKPEESRVSSVLEESKRLVDTAMYATMQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MRALAVLSVTLVMACTEAFFPFISRGKELLWGKPEESRVSSVLEESKRLVDTAMYATMQR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 NLKKRGILSAAQLLSFSKLPEPTSGVIARAAEIMETSIQAMKRKVNLKTQQSQHPTDALS
       ::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NLKKRGILSPAQLLSFSKLPEPTSGVIARAAEIMETSIQAMKRKVNLKTQQSQHPTDALS
               70        80        90       100       110       120

              130       140       150       160       170          
pF1KE5 EDLLSIIANMSGCLPYMLPPKCPNTCLANKYRPITGACNNRKMKYKPDHSETAN      
       :::::::::::::::::::::::::::::::::::::::::                   
XP_011 EDLLSIIANMSGCLPYMLPPKCPNTCLANKYRPITGACNNRDHPRWGASNTALARWLPPV
              130       140       150       160       170       180

XP_011 YEDGFSQPRGWNPGFLYNGFPLPPVREVTRHVIQVSNEVVTDDDRYSDLLMAWGQYIDHD
              190       200       210       220       230       240

>>NP_000538 (OMIM: 274500,606765) thyroid peroxidase iso  (933 aa)
 initn: 1035 init1: 1035 opt: 1035  Z-score: 1196.5  bits: 230.3 E(85289): 6.6e-60
Smith-Waterman score: 1035; 99.4% identity (99.4% similar) in 161 aa overlap (1-161:1-161)

               10        20        30        40        50        60
pF1KE5 MRALAVLSVTLVMACTEAFFPFISRGKELLWGKPEESRVSSVLEESKRLVDTAMYATMQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MRALAVLSVTLVMACTEAFFPFISRGKELLWGKPEESRVSSVLEESKRLVDTAMYATMQR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 NLKKRGILSAAQLLSFSKLPEPTSGVIARAAEIMETSIQAMKRKVNLKTQQSQHPTDALS
       ::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 NLKKRGILSPAQLLSFSKLPEPTSGVIARAAEIMETSIQAMKRKVNLKTQQSQHPTDALS
               70        80        90       100       110       120

              130       140       150       160       170          
pF1KE5 EDLLSIIANMSGCLPYMLPPKCPNTCLANKYRPITGACNNRKMKYKPDHSETAN      
       :::::::::::::::::::::::::::::::::::::::::                   
NP_000 EDLLSIIANMSGCLPYMLPPKCPNTCLANKYRPITGACNNRDHPRWGASNTALARWLPPV
              130       140       150       160       170       180

NP_000 YEDGFSQPRGWNPGFLYNGFPLPPVREVTRHVIQVSNEVVTDDDRYSDLLMAWGQYIDHD
              190       200       210       220       230       240

>>NP_001193673 (OMIM: 274500,606765) thyroid peroxidase   (933 aa)
 initn: 1035 init1: 1035 opt: 1035  Z-score: 1196.5  bits: 230.3 E(85289): 6.6e-60
Smith-Waterman score: 1035; 99.4% identity (99.4% similar) in 161 aa overlap (1-161:1-161)

               10        20        30        40        50        60
pF1KE5 MRALAVLSVTLVMACTEAFFPFISRGKELLWGKPEESRVSSVLEESKRLVDTAMYATMQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MRALAVLSVTLVMACTEAFFPFISRGKELLWGKPEESRVSSVLEESKRLVDTAMYATMQR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 NLKKRGILSAAQLLSFSKLPEPTSGVIARAAEIMETSIQAMKRKVNLKTQQSQHPTDALS
       ::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NLKKRGILSPAQLLSFSKLPEPTSGVIARAAEIMETSIQAMKRKVNLKTQQSQHPTDALS
               70        80        90       100       110       120

              130       140       150       160       170          
pF1KE5 EDLLSIIANMSGCLPYMLPPKCPNTCLANKYRPITGACNNRKMKYKPDHSETAN      
       :::::::::::::::::::::::::::::::::::::::::                   
NP_001 EDLLSIIANMSGCLPYMLPPKCPNTCLANKYRPITGACNNRDHPRWGASNTALARWLPPV
              130       140       150       160       170       180

NP_001 YEDGFSQPRGWNPGFLYNGFPLPPVREVTRHVIQVSNEVVTDDDRYSDLLMAWGQYIDHD
              190       200       210       220       230       240

>>XP_011508681 (OMIM: 274500,606765) PREDICTED: thyroid   (935 aa)
 initn: 1035 init1: 1035 opt: 1035  Z-score: 1196.5  bits: 230.3 E(85289): 6.6e-60
Smith-Waterman score: 1035; 99.4% identity (99.4% similar) in 161 aa overlap (1-161:1-161)

               10        20        30        40        50        60
pF1KE5 MRALAVLSVTLVMACTEAFFPFISRGKELLWGKPEESRVSSVLEESKRLVDTAMYATMQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MRALAVLSVTLVMACTEAFFPFISRGKELLWGKPEESRVSSVLEESKRLVDTAMYATMQR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 NLKKRGILSAAQLLSFSKLPEPTSGVIARAAEIMETSIQAMKRKVNLKTQQSQHPTDALS
       ::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NLKKRGILSPAQLLSFSKLPEPTSGVIARAAEIMETSIQAMKRKVNLKTQQSQHPTDALS
               70        80        90       100       110       120

              130       140       150       160       170          
pF1KE5 EDLLSIIANMSGCLPYMLPPKCPNTCLANKYRPITGACNNRKMKYKPDHSETAN      
       :::::::::::::::::::::::::::::::::::::::::                   
XP_011 EDLLSIIANMSGCLPYMLPPKCPNTCLANKYRPITGACNNRDHPRWGASNTALARWLPPV
              130       140       150       160       170       180

XP_011 YEDGFSQPRGWNPGFLYNGFPLPPVREVTRHVIQVSNEVVTDDDRYSDLLMAWGQYIDHD
              190       200       210       220       230       240

>>NP_000241 (OMIM: 104300,254600,606989) myeloperoxidase  (745 aa)
 initn: 219 init1: 114 opt: 232  Z-score: 270.6  bits: 58.6 E(85289): 2.5e-08
Smith-Waterman score: 232; 31.9% identity (60.2% similar) in 166 aa overlap (1-162:27-184)

                                         10        20         30   
pF1KE5                           MRALAVLSVTLVMACTEAFFPFISRGKE-LLWGK
                                 :. : .:.  :..  :    :  :.:    . :.
NP_000 MGVPFFSSLRCMVDLGPCWAGGLTAEMKLLLALAGLLAILAT----PQPSEGAAPAVLGE
               10        20        30        40            50      

            40        50        60           70        80        90
pF1KE5 PEESRVSSVLEESKRLVDTAMYATMQRNLKKR---GILSAAQLLSFSKLPEPTSGVIARA
        . : : : .::.:.::: : :   ....:.:   :  :  .:::. : :  .. . .::
NP_000 VDTSLVLSSMEEAKQLVDKA-YKERRESIKQRLRSGSASPMELLSYFKQPVAATRTAVRA
         60        70         80        90       100       110     

              100       110       120       130       140       150
pF1KE5 AEIMETSIQAMKRKVNLKTQQSQHPTDALSEDLLSIIANMSGCLPYMLPPKCPNTCLANK
       :. ...... ..::.    ..  . ::.:.   :..... :::    .   ::.    .:
NP_000 ADYLHVALDLLERKLRSLWRRPFNVTDVLTPAQLNVLSKSSGCAYQDVGVTCPEQ---DK
         120       130       140       150       160       170     

              160       170                                        
pF1KE5 YRPITGACNNRKMKYKPDHSETAN                                    
       :: ::: ::::.                                                
NP_000 YRTITGMCNNRRSPTLGASNRAFVRWLPAEYEDGFSLPYGWTPGVKRNGFPVALARAVSN
            180       190       200       210       220       230  




174 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 23:38:18 2016 done: Mon Nov  7 23:38:19 2016
 Total Scan time:  5.180 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]
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