FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5296, 174 aa 1>>>pF1KE5296 174 - 174 aa - 174 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5987+/-0.00078; mu= 11.3647+/- 0.047 mean_var=71.3826+/-13.828, 0's: 0 Z-trim(109.1): 12 B-trim: 164 in 1/50 Lambda= 0.151802 statistics sampled from 10643 (10653) to 10643 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.721), E-opt: 0.2 (0.327), width: 16 Scan time: 1.810 The best scores are: opt bits E(32554) CCDS1646.1 TPO gene_id:7173|Hs108|chr2 ( 760) 1035 235.5 5.5e-62 CCDS1644.1 TPO gene_id:7173|Hs108|chr2 ( 876) 1035 235.5 6.2e-62 CCDS1643.1 TPO gene_id:7173|Hs108|chr2 ( 933) 1035 235.5 6.5e-62 >>CCDS1646.1 TPO gene_id:7173|Hs108|chr2 (760 aa) initn: 1035 init1: 1035 opt: 1035 Z-score: 1226.3 bits: 235.5 E(32554): 5.5e-62 Smith-Waterman score: 1035; 99.4% identity (99.4% similar) in 161 aa overlap (1-161:1-161) 10 20 30 40 50 60 pF1KE5 MRALAVLSVTLVMACTEAFFPFISRGKELLWGKPEESRVSSVLEESKRLVDTAMYATMQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS16 MRALAVLSVTLVMACTEAFFPFISRGKELLWGKPEESRVSSVLEESKRLVDTAMYATMQR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 NLKKRGILSAAQLLSFSKLPEPTSGVIARAAEIMETSIQAMKRKVNLKTQQSQHPTDALS ::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::: CCDS16 NLKKRGILSPAQLLSFSKLPEPTSGVIARAAEIMETSIQAMKRKVNLKTQQSQHPTDALS 70 80 90 100 110 120 130 140 150 160 170 pF1KE5 EDLLSIIANMSGCLPYMLPPKCPNTCLANKYRPITGACNNRKMKYKPDHSETAN ::::::::::::::::::::::::::::::::::::::::: CCDS16 EDLLSIIANMSGCLPYMLPPKCPNTCLANKYRPITGACNNRDHPRWGASNTALARWLPPV 130 140 150 160 170 180 CCDS16 YEDGFSQPRGWNPGFLYNGFPLPPVREVTRHVIQVSNEVVTDDDRYSDLLMAWGQYIDHD 190 200 210 220 230 240 >>CCDS1644.1 TPO gene_id:7173|Hs108|chr2 (876 aa) initn: 1035 init1: 1035 opt: 1035 Z-score: 1225.4 bits: 235.5 E(32554): 6.2e-62 Smith-Waterman score: 1035; 99.4% identity (99.4% similar) in 161 aa overlap (1-161:1-161) 10 20 30 40 50 60 pF1KE5 MRALAVLSVTLVMACTEAFFPFISRGKELLWGKPEESRVSSVLEESKRLVDTAMYATMQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS16 MRALAVLSVTLVMACTEAFFPFISRGKELLWGKPEESRVSSVLEESKRLVDTAMYATMQR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 NLKKRGILSAAQLLSFSKLPEPTSGVIARAAEIMETSIQAMKRKVNLKTQQSQHPTDALS ::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::: CCDS16 NLKKRGILSPAQLLSFSKLPEPTSGVIARAAEIMETSIQAMKRKVNLKTQQSQHPTDALS 70 80 90 100 110 120 130 140 150 160 170 pF1KE5 EDLLSIIANMSGCLPYMLPPKCPNTCLANKYRPITGACNNRKMKYKPDHSETAN ::::::::::::::::::::::::::::::::::::::::: CCDS16 EDLLSIIANMSGCLPYMLPPKCPNTCLANKYRPITGACNNRDHPRWGASNTALARWLPPV 130 140 150 160 170 180 CCDS16 YEDGFSQPRGWNPGFLYNGFPLPPVREVTRHVIQVSNEVVTDDDRYSDLLMAWGQYIDHD 190 200 210 220 230 240 >>CCDS1643.1 TPO gene_id:7173|Hs108|chr2 (933 aa) initn: 1035 init1: 1035 opt: 1035 Z-score: 1225.0 bits: 235.5 E(32554): 6.5e-62 Smith-Waterman score: 1035; 99.4% identity (99.4% similar) in 161 aa overlap (1-161:1-161) 10 20 30 40 50 60 pF1KE5 MRALAVLSVTLVMACTEAFFPFISRGKELLWGKPEESRVSSVLEESKRLVDTAMYATMQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS16 MRALAVLSVTLVMACTEAFFPFISRGKELLWGKPEESRVSSVLEESKRLVDTAMYATMQR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 NLKKRGILSAAQLLSFSKLPEPTSGVIARAAEIMETSIQAMKRKVNLKTQQSQHPTDALS ::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::: CCDS16 NLKKRGILSPAQLLSFSKLPEPTSGVIARAAEIMETSIQAMKRKVNLKTQQSQHPTDALS 70 80 90 100 110 120 130 140 150 160 170 pF1KE5 EDLLSIIANMSGCLPYMLPPKCPNTCLANKYRPITGACNNRKMKYKPDHSETAN ::::::::::::::::::::::::::::::::::::::::: CCDS16 EDLLSIIANMSGCLPYMLPPKCPNTCLANKYRPITGACNNRDHPRWGASNTALARWLPPV 130 140 150 160 170 180 CCDS16 YEDGFSQPRGWNPGFLYNGFPLPPVREVTRHVIQVSNEVVTDDDRYSDLLMAWGQYIDHD 190 200 210 220 230 240 174 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 23:38:18 2016 done: Mon Nov 7 23:38:18 2016 Total Scan time: 1.810 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]