Result of FASTA (omim) for
pFN21AE5136
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5136, 136 aa
1>>>pF1KE5136 136 - 136 aa - 136 aa
Library: /omim/omim.rfq.tfa
64369986 residues in 92320 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7054+/-0.00031; mu= 15.4342+/- 0.019
mean_var=65.7993+/-12.822, 0's: 0 Z-trim(116.5): 19 B-trim: 252 in 1/50
Lambda= 0.158112
statistics sampled from 28800 (28819) to 28800 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.697), E-opt: 0.2 (0.312), width: 16
Scan time: 2.990
The best scores are: opt bits E(92320)
NP_003527 (OMIM: 602818) histone H3.1 [Homo sapien ( 136) 870 206.3 1.3e-53
NP_003525 (OMIM: 602815) histone H3.1 [Homo sapien ( 136) 870 206.3 1.3e-53
NP_003523 (OMIM: 602813) histone H3.1 [Homo sapien ( 136) 870 206.3 1.3e-53
NP_003521 (OMIM: 602811) histone H3.1 [Homo sapien ( 136) 870 206.3 1.3e-53
NP_003524 (OMIM: 602814) histone H3.1 [Homo sapien ( 136) 870 206.3 1.3e-53
NP_003520 (OMIM: 602810) histone H3.1 [Homo sapien ( 136) 870 206.3 1.3e-53
NP_066298 (OMIM: 602816) histone H3.1 [Homo sapien ( 136) 870 206.3 1.3e-53
NP_003522 (OMIM: 602812) histone H3.1 [Homo sapien ( 136) 870 206.3 1.3e-53
NP_003526 (OMIM: 602817) histone H3.1 [Homo sapien ( 136) 870 206.3 1.3e-53
NP_003528 (OMIM: 602819) histone H3.1 [Homo sapien ( 136) 870 206.3 1.3e-53
NP_066403 (OMIM: 142780) histone H3.2 [Homo sapien ( 136) 856 203.2 1.2e-52
NP_003484 (OMIM: 602820) histone H3.1t [Homo sapie ( 136) 852 202.2 2.2e-52
NP_005315 (OMIM: 601058) histone H3.3 [Homo sapien ( 136) 837 198.8 2.4e-51
NP_002098 (OMIM: 601128) histone H3.3 [Homo sapien ( 136) 837 198.8 2.4e-51
NP_001013721 (OMIM: 616134) histone H3.3C [Homo sa ( 135) 791 188.3 3.5e-48
NP_001800 (OMIM: 117139) histone H3-like centromer ( 140) 374 93.2 1.5e-19
NP_001035891 (OMIM: 117139) histone H3-like centro ( 114) 168 46.2 1.8e-05
>>NP_003527 (OMIM: 602818) histone H3.1 [Homo sapiens] (136 aa)
initn: 870 init1: 870 opt: 870 Z-score: 1084.1 bits: 206.3 E(92320): 1.3e-53
Smith-Waterman score: 870; 100.0% identity (100.0% similar) in 136 aa overlap (1-136:1-136)
10 20 30 40 50 60
pF1KE5 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
70 80 90 100 110 120
130
pF1KE5 MPKDIQLARRIRGERA
::::::::::::::::
NP_003 MPKDIQLARRIRGERA
130
>>NP_003525 (OMIM: 602815) histone H3.1 [Homo sapiens] (136 aa)
initn: 870 init1: 870 opt: 870 Z-score: 1084.1 bits: 206.3 E(92320): 1.3e-53
Smith-Waterman score: 870; 100.0% identity (100.0% similar) in 136 aa overlap (1-136:1-136)
10 20 30 40 50 60
pF1KE5 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
70 80 90 100 110 120
130
pF1KE5 MPKDIQLARRIRGERA
::::::::::::::::
NP_003 MPKDIQLARRIRGERA
130
>>NP_003523 (OMIM: 602813) histone H3.1 [Homo sapiens] (136 aa)
initn: 870 init1: 870 opt: 870 Z-score: 1084.1 bits: 206.3 E(92320): 1.3e-53
Smith-Waterman score: 870; 100.0% identity (100.0% similar) in 136 aa overlap (1-136:1-136)
10 20 30 40 50 60
pF1KE5 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
70 80 90 100 110 120
130
pF1KE5 MPKDIQLARRIRGERA
::::::::::::::::
NP_003 MPKDIQLARRIRGERA
130
>>NP_003521 (OMIM: 602811) histone H3.1 [Homo sapiens] (136 aa)
initn: 870 init1: 870 opt: 870 Z-score: 1084.1 bits: 206.3 E(92320): 1.3e-53
Smith-Waterman score: 870; 100.0% identity (100.0% similar) in 136 aa overlap (1-136:1-136)
10 20 30 40 50 60
pF1KE5 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
70 80 90 100 110 120
130
pF1KE5 MPKDIQLARRIRGERA
::::::::::::::::
NP_003 MPKDIQLARRIRGERA
130
>>NP_003524 (OMIM: 602814) histone H3.1 [Homo sapiens] (136 aa)
initn: 870 init1: 870 opt: 870 Z-score: 1084.1 bits: 206.3 E(92320): 1.3e-53
Smith-Waterman score: 870; 100.0% identity (100.0% similar) in 136 aa overlap (1-136:1-136)
10 20 30 40 50 60
pF1KE5 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
70 80 90 100 110 120
130
pF1KE5 MPKDIQLARRIRGERA
::::::::::::::::
NP_003 MPKDIQLARRIRGERA
130
>>NP_003520 (OMIM: 602810) histone H3.1 [Homo sapiens] (136 aa)
initn: 870 init1: 870 opt: 870 Z-score: 1084.1 bits: 206.3 E(92320): 1.3e-53
Smith-Waterman score: 870; 100.0% identity (100.0% similar) in 136 aa overlap (1-136:1-136)
10 20 30 40 50 60
pF1KE5 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
70 80 90 100 110 120
130
pF1KE5 MPKDIQLARRIRGERA
::::::::::::::::
NP_003 MPKDIQLARRIRGERA
130
>>NP_066298 (OMIM: 602816) histone H3.1 [Homo sapiens] (136 aa)
initn: 870 init1: 870 opt: 870 Z-score: 1084.1 bits: 206.3 E(92320): 1.3e-53
Smith-Waterman score: 870; 100.0% identity (100.0% similar) in 136 aa overlap (1-136:1-136)
10 20 30 40 50 60
pF1KE5 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
70 80 90 100 110 120
130
pF1KE5 MPKDIQLARRIRGERA
::::::::::::::::
NP_066 MPKDIQLARRIRGERA
130
>>NP_003522 (OMIM: 602812) histone H3.1 [Homo sapiens] (136 aa)
initn: 870 init1: 870 opt: 870 Z-score: 1084.1 bits: 206.3 E(92320): 1.3e-53
Smith-Waterman score: 870; 100.0% identity (100.0% similar) in 136 aa overlap (1-136:1-136)
10 20 30 40 50 60
pF1KE5 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
70 80 90 100 110 120
130
pF1KE5 MPKDIQLARRIRGERA
::::::::::::::::
NP_003 MPKDIQLARRIRGERA
130
>>NP_003526 (OMIM: 602817) histone H3.1 [Homo sapiens] (136 aa)
initn: 870 init1: 870 opt: 870 Z-score: 1084.1 bits: 206.3 E(92320): 1.3e-53
Smith-Waterman score: 870; 100.0% identity (100.0% similar) in 136 aa overlap (1-136:1-136)
10 20 30 40 50 60
pF1KE5 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
70 80 90 100 110 120
130
pF1KE5 MPKDIQLARRIRGERA
::::::::::::::::
NP_003 MPKDIQLARRIRGERA
130
>>NP_003528 (OMIM: 602819) histone H3.1 [Homo sapiens] (136 aa)
initn: 870 init1: 870 opt: 870 Z-score: 1084.1 bits: 206.3 E(92320): 1.3e-53
Smith-Waterman score: 870; 100.0% identity (100.0% similar) in 136 aa overlap (1-136:1-136)
10 20 30 40 50 60
pF1KE5 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
70 80 90 100 110 120
130
pF1KE5 MPKDIQLARRIRGERA
::::::::::::::::
NP_003 MPKDIQLARRIRGERA
130
136 residues in 1 query sequences
64369986 residues in 92320 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Oct 24 21:35:46 2019 done: Thu Oct 24 21:35:46 2019
Total Scan time: 2.990 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]