Result of FASTA (omim) for pFN21AE6646
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6646, 226 aa
  1>>>pF1KE6646 226 - 226 aa - 226 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.3971+/-0.00044; mu= -2.6218+/- 0.027
 mean_var=256.1150+/-54.125, 0's: 0 Z-trim(116.9): 282  B-trim: 231 in 1/56
 Lambda= 0.080141
 statistics sampled from 28150 (28525) to 28150 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.703), E-opt: 0.2 (0.334), width:  16
 Scan time:  5.450

The best scores are:                                      opt bits E(85289)
NP_776169 (OMIM: 613173) neuronal growth regulator ( 354) 1507 187.5 2.4e-47
XP_011539502 (OMIM: 613173) PREDICTED: neuronal gr ( 320) 1240 156.6 4.4e-38
NP_002329 (OMIM: 603241) limbic system-associated  ( 338)  768 102.1 1.2e-21
XP_011511142 (OMIM: 603241) PREDICTED: limbic syst ( 344)  729 97.6 2.8e-20
XP_016861872 (OMIM: 603241) PREDICTED: limbic syst ( 350)  729 97.6 2.8e-20
NP_001305844 (OMIM: 603241) limbic system-associat ( 361)  729 97.6 2.9e-20
XP_006718909 (OMIM: 167000,600632) PREDICTED: opio ( 337)  707 95.0 1.6e-19
XP_006718920 (OMIM: 607938) PREDICTED: neurotrimin ( 303)  706 94.9 1.6e-19
NP_001306035 (OMIM: 167000,600632) opioid-binding  ( 344)  707 95.0 1.6e-19
XP_016873353 (OMIM: 607938) PREDICTED: neurotrimin ( 325)  706 94.9 1.7e-19
XP_016873351 (OMIM: 607938) PREDICTED: neurotrimin ( 335)  706 94.9 1.7e-19
XP_016873350 (OMIM: 607938) PREDICTED: neurotrimin ( 335)  706 94.9 1.7e-19
NP_057606 (OMIM: 607938) neurotrimin isoform 1 pre ( 344)  706 94.9 1.8e-19
XP_016873349 (OMIM: 607938) PREDICTED: neurotrimin ( 344)  706 94.9 1.8e-19
NP_001041674 (OMIM: 607938) neurotrimin isoform 2  ( 344)  706 94.9 1.8e-19
XP_016873342 (OMIM: 607938) PREDICTED: neurotrimin ( 376)  706 95.0 1.9e-19
XP_016873341 (OMIM: 607938) PREDICTED: neurotrimin ( 385)  706 95.0 1.9e-19
XP_016873340 (OMIM: 607938) PREDICTED: neurotrimin ( 385)  706 95.0 1.9e-19
XP_016873355 (OMIM: 607938) PREDICTED: neurotrimin ( 285)  699 94.0 2.7e-19
XP_011541163 (OMIM: 607938) PREDICTED: neurotrimin ( 326)  699 94.1   3e-19
XP_016873354 (OMIM: 607938) PREDICTED: neurotrimin ( 326)  699 94.1   3e-19
NP_001306033 (OMIM: 167000,600632) opioid-binding  ( 245)  696 93.6 3.1e-19
XP_016873345 (OMIM: 607938) PREDICTED: neurotrimin ( 358)  699 94.1 3.2e-19
XP_016873346 (OMIM: 607938) PREDICTED: neurotrimin ( 358)  699 94.1 3.2e-19
XP_005271637 (OMIM: 607938) PREDICTED: neurotrimin ( 367)  699 94.1 3.2e-19
XP_005271638 (OMIM: 607938) PREDICTED: neurotrimin ( 367)  699 94.1 3.2e-19
NP_001306034 (OMIM: 167000,600632) opioid-binding  ( 304)  696 93.7 3.6e-19
XP_011541158 (OMIM: 167000,600632) PREDICTED: opio ( 304)  696 93.7 3.6e-19
NP_001012393 (OMIM: 167000,600632) opioid-binding  ( 338)  696 93.8 3.9e-19
NP_002536 (OMIM: 167000,600632) opioid-binding pro ( 345)  696 93.8   4e-19
XP_016873352 (OMIM: 607938) PREDICTED: neurotrimin ( 332)  693 93.4 4.9e-19
NP_001137531 (OMIM: 607938) neurotrimin isoform 4  ( 316)  692 93.3 5.1e-19
XP_016873344 (OMIM: 607938) PREDICTED: neurotrimin ( 373)  693 93.5 5.3e-19
XP_016873343 (OMIM: 607938) PREDICTED: neurotrimin ( 373)  693 93.5 5.3e-19
XP_016873348 (OMIM: 607938) PREDICTED: neurotrimin ( 346)  692 93.3 5.5e-19
XP_016873347 (OMIM: 607938) PREDICTED: neurotrimin ( 346)  692 93.3 5.5e-19
XP_006718918 (OMIM: 607938) PREDICTED: neurotrimin ( 346)  692 93.3 5.5e-19
NP_001137530 (OMIM: 607938) neurotrimin isoform 3  ( 355)  692 93.3 5.6e-19
XP_005271639 (OMIM: 607938) PREDICTED: neurotrimin ( 355)  692 93.3 5.6e-19
NP_001306032 (OMIM: 167000,600632) opioid-binding  ( 354)  684 92.4 1.1e-18
XP_011539503 (OMIM: 613173) PREDICTED: neuronal gr ( 234)  637 86.8 3.4e-17
XP_016856450 (OMIM: 613173) PREDICTED: neuronal gr ( 222)  633 86.3 4.6e-17
XP_016861873 (OMIM: 603241) PREDICTED: limbic syst ( 197)  478 68.3   1e-11
XP_016874315 (OMIM: 600016,612540) PREDICTED: cont ( 627)  292 47.3 6.8e-05
NP_001242992 (OMIM: 600016,612540) contactin-1 iso ( 627)  292 47.3 6.8e-05
XP_016874314 (OMIM: 600016,612540) PREDICTED: cont ( 627)  292 47.3 6.8e-05
XP_016874316 (OMIM: 600016,612540) PREDICTED: cont ( 627)  292 47.3 6.8e-05
NP_001242993 (OMIM: 600016,612540) contactin-1 iso ( 627)  292 47.3 6.8e-05
NP_778203 (OMIM: 600016,612540) contactin-1 isofor (1007)  292 47.6 9.4e-05
XP_016874313 (OMIM: 600016,612540) PREDICTED: cont (1015)  292 47.6 9.4e-05


>>NP_776169 (OMIM: 613173) neuronal growth regulator 1 p  (354 aa)
 initn: 1507 init1: 1507 opt: 1507  Z-score: 971.0  bits: 187.5 E(85289): 2.4e-47
Smith-Waterman score: 1507; 100.0% identity (100.0% similar) in 226 aa overlap (1-226:129-354)

                                             10        20        30
pF1KE6                               MQVHLTVQVPPKIYDISNDMTVNEGTNVTL
                                     ::::::::::::::::::::::::::::::
NP_776 RDYSLQIQNVDVTDDGPYTCSVQTQHTPRTMQVHLTVQVPPKIYDISNDMTVNEGTNVTL
      100       110       120       130       140       150        

               40        50        60        70        80        90
pF1KE6 TCLATGKPEPSISWRHISPSAKPFENGQYLDIYGITRDQAGEYECSAENDVSFPDVRKVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_776 TCLATGKPEPSISWRHISPSAKPFENGQYLDIYGITRDQAGEYECSAENDVSFPDVRKVK
      160       170       180       190       200       210        

              100       110       120       130       140       150
pF1KE6 VVVNFAPTIQEIKSGTVTPGRSGLIRCEGAGVPPPAFEWYKGEKKLFNGQQGIIIQNFST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_776 VVVNFAPTIQEIKSGTVTPGRSGLIRCEGAGVPPPAFEWYKGEKKLFNGQQGIIIQNFST
      220       230       240       250       260       270        

              160       170       180       190       200       210
pF1KE6 RSILTVTNVTQEHFGNYTCVAANKLGTTNASLPLNPPSTAQYGITGSADVLFSCWYLVLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_776 RSILTVTNVTQEHFGNYTCVAANKLGTTNASLPLNPPSTAQYGITGSADVLFSCWYLVLT
      280       290       300       310       320       330        

              220      
pF1KE6 LSSFTSIFYLKNAILQ
       ::::::::::::::::
NP_776 LSSFTSIFYLKNAILQ
      340       350    

>>XP_011539502 (OMIM: 613173) PREDICTED: neuronal growth  (320 aa)
 initn: 1240 init1: 1240 opt: 1240  Z-score: 804.7  bits: 156.6 E(85289): 4.4e-38
Smith-Waterman score: 1240; 100.0% identity (100.0% similar) in 185 aa overlap (1-185:129-313)

                                             10        20        30
pF1KE6                               MQVHLTVQVPPKIYDISNDMTVNEGTNVTL
                                     ::::::::::::::::::::::::::::::
XP_011 RDYSLQIQNVDVTDDGPYTCSVQTQHTPRTMQVHLTVQVPPKIYDISNDMTVNEGTNVTL
      100       110       120       130       140       150        

               40        50        60        70        80        90
pF1KE6 TCLATGKPEPSISWRHISPSAKPFENGQYLDIYGITRDQAGEYECSAENDVSFPDVRKVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TCLATGKPEPSISWRHISPSAKPFENGQYLDIYGITRDQAGEYECSAENDVSFPDVRKVK
      160       170       180       190       200       210        

              100       110       120       130       140       150
pF1KE6 VVVNFAPTIQEIKSGTVTPGRSGLIRCEGAGVPPPAFEWYKGEKKLFNGQQGIIIQNFST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VVVNFAPTIQEIKSGTVTPGRSGLIRCEGAGVPPPAFEWYKGEKKLFNGQQGIIIQNFST
      220       230       240       250       260       270        

              160       170       180       190       200       210
pF1KE6 RSILTVTNVTQEHFGNYTCVAANKLGTTNASLPLNPPSTAQYGITGSADVLFSCWYLVLT
       :::::::::::::::::::::::::::::::::::                         
XP_011 RSILTVTNVTQEHFGNYTCVAANKLGTTNASLPLNHKKEVSS                  
      280       290       300       310       320                  

              220      
pF1KE6 LSSFTSIFYLKNAILQ

>>NP_002329 (OMIM: 603241) limbic system-associated memb  (338 aa)
 initn: 675 init1: 359 opt: 768  Z-score: 509.5  bits: 102.1 E(85289): 1.2e-21
Smith-Waterman score: 768; 53.7% identity (81.0% similar) in 216 aa overlap (2-216:123-336)

                                            10        20        30 
pF1KE6                              MQVHLTVQVPPKIYDISNDMTVNEGTNVTLT
                                     ::.: ::::::: .::.:.:::::.::::.
NP_002 EYSLRIQKVDVYDEGSYTCSVQTQHEPKTSQVYLIVQVPPKISNISSDVTVNEGSNVTLV
            100       110       120       130       140       150  

              40        50         60        70        80        90
pF1KE6 CLATGKPEPSISWRHISPSAKPFENGQ-YLDIYGITRDQAGEYECSAENDVSFPDVRKVK
       :.:.:.::: :.:::..:... ::. . ::.: ::::.:.:.:::.: :.::  ::..::
NP_002 CMANGRPEPVITWRHLTPTGREFEGEEEYLEILGITREQSGKYECKAANEVSSADVKQVK
            160       170       180       190       200       210  

              100       110       120       130       140       150
pF1KE6 VVVNFAPTIQEIKSGTVTPGRSGLIRCEGAGVPPPAFEWYKGEKKLFNGQQGIIIQNFST
       :.::. ::: : ::. .: ::.. ..::...:: : ::::. . .. :. .:. :..   
NP_002 VTVNYPPTITESKSNEATTGRQASLKCEASAVPAPDFEWYRDDTRI-NSANGLEIKSTEG
            220       230       240       250        260       270 

              160       170       180       190       200       210
pF1KE6 RSILTVTNVTQEHFGNYTCVAANKLGTTNASLPLNPPSTAQYGITGSADVLFSCWYLVLT
       .: :::::::.::.::::::::::::.::::: :  :.... ::.:: ..    : :. .
NP_002 QSSLTVTNVTEEHYGNYTCVAANKLGVTNASLVLFRPGSVR-GINGSISLAVPLWLLAAS
             280       290       300       310        320       330

              220      
pF1KE6 LSSFTSIFYLKNAILQ
       :  . :          
NP_002 LLCLLSKC        
                       

>>XP_011511142 (OMIM: 603241) PREDICTED: limbic system-a  (344 aa)
 initn: 675 init1: 359 opt: 729  Z-score: 485.1  bits: 97.6 E(85289): 2.8e-20
Smith-Waterman score: 729; 58.2% identity (84.8% similar) in 184 aa overlap (2-184:123-305)

                                            10        20        30 
pF1KE6                              MQVHLTVQVPPKIYDISNDMTVNEGTNVTLT
                                     ::.: ::::::: .::.:.:::::.::::.
XP_011 EYSLRIQKVDVYDEGSYTCSVQTQHEPKTSQVYLIVQVPPKISNISSDVTVNEGSNVTLV
            100       110       120       130       140       150  

              40        50         60        70        80        90
pF1KE6 CLATGKPEPSISWRHISPSAKPFENGQ-YLDIYGITRDQAGEYECSAENDVSFPDVRKVK
       :.:.:.::: :.:::..:... ::. . ::.: ::::.:.:.:::.: :.::  ::..::
XP_011 CMANGRPEPVITWRHLTPTGREFEGEEEYLEILGITREQSGKYECKAANEVSSADVKQVK
            160       170       180       190       200       210  

              100       110       120       130       140       150
pF1KE6 VVVNFAPTIQEIKSGTVTPGRSGLIRCEGAGVPPPAFEWYKGEKKLFNGQQGIIIQNFST
       :.::. ::: : ::. .: ::.. ..::...:: : ::::. . .. :. .:. :..   
XP_011 VTVNYPPTITESKSNEATTGRQASLKCEASAVPAPDFEWYRDDTRI-NSANGLEIKSTEG
            220       230       240       250        260       270 

              160       170       180       190       200       210
pF1KE6 RSILTVTNVTQEHFGNYTCVAANKLGTTNASLPLNPPSTAQYGITGSADVLFSCWYLVLT
       .: :::::::.::.::::::::::::.::::: :                          
XP_011 QSSLTVTNVTEEHYGNYTCVAANKLGVTNASLVLFKRVLPTIPHPIQVYLCLALLHNGSA
             280       290       300       310       320       330 

              220      
pF1KE6 LSSFTSIFYLKNAILQ
                       
XP_011 PRDILTLRTVGSE   
             340       

>>XP_016861872 (OMIM: 603241) PREDICTED: limbic system-a  (350 aa)
 initn: 675 init1: 359 opt: 729  Z-score: 485.0  bits: 97.6 E(85289): 2.8e-20
Smith-Waterman score: 749; 50.9% identity (77.6% similar) in 228 aa overlap (2-216:123-348)

                                            10        20        30 
pF1KE6                              MQVHLTVQVPPKIYDISNDMTVNEGTNVTLT
                                     ::.: ::::::: .::.:.:::::.::::.
XP_016 EYSLRIQKVDVYDEGSYTCSVQTQHEPKTSQVYLIVQVPPKISNISSDVTVNEGSNVTLV
            100       110       120       130       140       150  

              40        50         60        70        80        90
pF1KE6 CLATGKPEPSISWRHISPSAKPFENGQ-YLDIYGITRDQAGEYECSAENDVSFPDVRKVK
       :.:.:.::: :.:::..:... ::. . ::.: ::::.:.:.:::.: :.::  ::..::
XP_016 CMANGRPEPVITWRHLTPTGREFEGEEEYLEILGITREQSGKYECKAANEVSSADVKQVK
            160       170       180       190       200       210  

              100       110       120       130       140       150
pF1KE6 VVVNFAPTIQEIKSGTVTPGRSGLIRCEGAGVPPPAFEWYKGEKKLFNGQQGIIIQNFST
       :.::. ::: : ::. .: ::.. ..::...:: : ::::. . .. :. .:. :..   
XP_016 VTVNYPPTITESKSNEATTGRQASLKCEASAVPAPDFEWYRDDTRI-NSANGLEIKSTEG
            220       230       240       250        260       270 

              160       170       180                   190        
pF1KE6 RSILTVTNVTQEHFGNYTCVAANKLGTTNASL------------PLNPPSTAQYGITGSA
       .: :::::::.::.::::::::::::.:::::            :.. :.... ::.:: 
XP_016 QSSLTVTNVTEEHYGNYTCVAANKLGVTNASLVLFKRVLPTIPHPIQGPGSVR-GINGSI
             280       290       300       310       320        330

      200       210       220      
pF1KE6 DVLFSCWYLVLTLSSFTSIFYLKNAILQ
       ..    : :. .:  . :          
XP_016 SLAVPLWLLAASLLCLLSKC        
              340       350        

>>NP_001305844 (OMIM: 603241) limbic system-associated m  (361 aa)
 initn: 675 init1: 359 opt: 729  Z-score: 484.8  bits: 97.6 E(85289): 2.9e-20
Smith-Waterman score: 729; 58.2% identity (84.8% similar) in 184 aa overlap (2-184:123-305)

                                            10        20        30 
pF1KE6                              MQVHLTVQVPPKIYDISNDMTVNEGTNVTLT
                                     ::.: ::::::: .::.:.:::::.::::.
NP_001 EYSLRIQKVDVYDEGSYTCSVQTQHEPKTSQVYLIVQVPPKISNISSDVTVNEGSNVTLV
            100       110       120       130       140       150  

              40        50         60        70        80        90
pF1KE6 CLATGKPEPSISWRHISPSAKPFENGQ-YLDIYGITRDQAGEYECSAENDVSFPDVRKVK
       :.:.:.::: :.:::..:... ::. . ::.: ::::.:.:.:::.: :.::  ::..::
NP_001 CMANGRPEPVITWRHLTPTGREFEGEEEYLEILGITREQSGKYECKAANEVSSADVKQVK
            160       170       180       190       200       210  

              100       110       120       130       140       150
pF1KE6 VVVNFAPTIQEIKSGTVTPGRSGLIRCEGAGVPPPAFEWYKGEKKLFNGQQGIIIQNFST
       :.::. ::: : ::. .: ::.. ..::...:: : ::::. . .. :. .:. :..   
NP_001 VTVNYPPTITESKSNEATTGRQASLKCEASAVPAPDFEWYRDDTRI-NSANGLEIKSTEG
            220       230       240       250        260       270 

              160       170       180       190       200       210
pF1KE6 RSILTVTNVTQEHFGNYTCVAANKLGTTNASLPLNPPSTAQYGITGSADVLFSCWYLVLT
       .: :::::::.::.::::::::::::.::::: :                          
NP_001 QSSLTVTNVTEEHYGNYTCVAANKLGVTNASLVLFKRVLPTIPHPIQEIGTTVHFKQKGP
             280       290       300       310       320       330 

              220                    
pF1KE6 LSSFTSIFYLKNAILQ              
                                     
NP_001 GSVRGINGSISLAVPLWLLAASLLCLLSKC
             340       350       360 

>>XP_006718909 (OMIM: 167000,600632) PREDICTED: opioid-b  (337 aa)
 initn: 699 init1: 449 opt: 707  Z-score: 471.4  bits: 95.0 E(85289): 1.6e-19
Smith-Waterman score: 707; 48.9% identity (76.9% similar) in 221 aa overlap (2-221:120-336)

                                            10        20        30 
pF1KE6                              MQVHLTVQVPPKIYDISNDMTVNEGTNVTLT
                                     .::: :::::.:..::.:.:::::..::: 
XP_006 QYSIMIQNVDVYDEGPYTCSVQTDNHPKTSRVHLIVQVPPQIMNISSDITVNEGSSVTLL
      90       100       110       120       130       140         

              40        50         60        70        80        90
pF1KE6 CLATGKPEPSISWRHISPSAKPF-ENGQYLDIYGITRDQAGEYECSAENDVSFPDVRKVK
       ::: :.:::...:::.: ... :  . .::.:  : :::.::::::: :::. :::::::
XP_006 CLAIGRPEPTVTWRHLSVKGQGFVSEDEYLEISDIKRDQSGEYECSALNDVAAPDVRKVK
     150       160       170       180       190       200         

              100       110       120       130       140       150
pF1KE6 VVVNFAPTIQEIKSGTVTPGRSGLIRCEGAGVPPPAFEWYKGEKKLFNGQQGIIIQNFST
       ..::. : :.. :.  :. :..:.. ::...::   :.:.: : .: .: .:. :.: . 
XP_006 ITVNYPPYISKAKNTGVSVGQKGILSCEASAVPMAEFQWFKEETRLATGLDGMRIENKGR
     210       220       230       240       250       260         

              160       170       180       190       200       210
pF1KE6 RSILTVTNVTQEHFGNYTCVAANKLGTTNASLPLNPPSTAQYGITGSADVLFSCWYLVLT
        : ::  ::... .:::::::.::::.::::. :  :...  :.. ::.  ..: .:  :
XP_006 MSTLTFFNVSEKDYGNYTCVATNKLGNTNASITLYGPGAVIDGVN-SASRALACLWLSGT
     270       280       290       300       310        320        

              220      
pF1KE6 LSSFTSIFYLKNAILQ
       : .    :..:     
XP_006 LLAH---FFIKF    
      330              

>>XP_006718920 (OMIM: 607938) PREDICTED: neurotrimin iso  (303 aa)
 initn: 690 init1: 445 opt: 706  Z-score: 471.3  bits: 94.9 E(85289): 1.6e-19
Smith-Waterman score: 706; 49.3% identity (76.6% similar) in 209 aa overlap (2-209:86-294)

                                            10        20        30 
pF1KE6                              MQVHLTVQVPPKIYDISNDMTVNEGTNVTLT
                                     .::: ::: ::: .::.:...:::.:..::
XP_006 QYSIEIQNVDVYDEGPYTCSVQTDNHPKTSRVHLIVQVSPKIVEISSDISINEGNNISLT
          60        70        80        90       100       110     

              40        50         60        70        80        90
pF1KE6 CLATGKPEPSISWRHISPSAKPF-ENGQYLDIYGITRDQAGEYECSAENDVSFPDVRKVK
       :.:::.:::...::::::.:  :  . .::.: ::::.:.:.::::: :::. : ::.::
XP_006 CIATGRPEPTVTWRHISPKAVGFVSEDEYLEIQGITREQSGDYECSASNDVAAPVVRRVK
         120       130       140       150       160       170     

              100       110       120       130       140       150
pF1KE6 VVVNFAPTIQEIKSGTVTPGRSGLIRCEGAGVPPPAFEWYKGEKKLFNGQQGIIIQNFST
       :.::. : :.: :.  :  :..: ..::...::   :.::: .:.:..:..:. ..:   
XP_006 VTVNYPPYISEAKGTGVPVGQKGTLQCEASAVPSAEFQWYKDDKRLIEGKKGVKVENRPF
         180       190       200       210       220       230     

              160       170       180       190       200       210
pF1KE6 RSILTVTNVTQEHFGNYTCVAANKLGTTNASLPLNPPSTAQYGITGSADVLFSCWYLVLT
        : :   ::... .:::::::.:::: ::::. :  :....   .:..      : : : 
XP_006 LSKLIFFNVSEHDYGNYTCVASNKLGHTNASIMLFGPGAVSEVSNGTSRRAGCVWLLPLL
         240       250       260       270       280       290     

              220      
pF1KE6 LSSFTSIFYLKNAILQ
                       
XP_006 VLHLLLKF        
         300           

>>NP_001306035 (OMIM: 167000,600632) opioid-binding prot  (344 aa)
 initn: 699 init1: 449 opt: 707  Z-score: 471.3  bits: 95.0 E(85289): 1.6e-19
Smith-Waterman score: 707; 48.9% identity (76.9% similar) in 221 aa overlap (2-221:127-343)

                                            10        20        30 
pF1KE6                              MQVHLTVQVPPKIYDISNDMTVNEGTNVTLT
                                     .::: :::::.:..::.:.:::::..::: 
NP_001 QYSIMIQNVDVYDEGPYTCSVQTDNHPKTSRVHLIVQVPPQIMNISSDITVNEGSSVTLL
        100       110       120       130       140       150      

              40        50         60        70        80        90
pF1KE6 CLATGKPEPSISWRHISPSAKPF-ENGQYLDIYGITRDQAGEYECSAENDVSFPDVRKVK
       ::: :.:::...:::.: ... :  . .::.:  : :::.::::::: :::. :::::::
NP_001 CLAIGRPEPTVTWRHLSVKGQGFVSEDEYLEISDIKRDQSGEYECSALNDVAAPDVRKVK
        160       170       180       190       200       210      

              100       110       120       130       140       150
pF1KE6 VVVNFAPTIQEIKSGTVTPGRSGLIRCEGAGVPPPAFEWYKGEKKLFNGQQGIIIQNFST
       ..::. : :.. :.  :. :..:.. ::...::   :.:.: : .: .: .:. :.: . 
NP_001 ITVNYPPYISKAKNTGVSVGQKGILSCEASAVPMAEFQWFKEETRLATGLDGMRIENKGR
        220       230       240       250       260       270      

              160       170       180       190       200       210
pF1KE6 RSILTVTNVTQEHFGNYTCVAANKLGTTNASLPLNPPSTAQYGITGSADVLFSCWYLVLT
        : ::  ::... .:::::::.::::.::::. :  :...  :.. ::.  ..: .:  :
NP_001 MSTLTFFNVSEKDYGNYTCVATNKLGNTNASITLYGPGAVIDGVN-SASRALACLWLSGT
        280       290       300       310       320        330     

              220      
pF1KE6 LSSFTSIFYLKNAILQ
       : .    :..:     
NP_001 LLAH---FFIKF    
            340        

>>XP_016873353 (OMIM: 607938) PREDICTED: neurotrimin iso  (325 aa)
 initn: 690 init1: 445 opt: 706  Z-score: 471.0  bits: 94.9 E(85289): 1.7e-19
Smith-Waterman score: 706; 49.3% identity (76.6% similar) in 209 aa overlap (2-209:108-316)

                                            10        20        30 
pF1KE6                              MQVHLTVQVPPKIYDISNDMTVNEGTNVTLT
                                     .::: ::: ::: .::.:...:::.:..::
XP_016 QYSIEIQNVDVYDEGPYTCSVQTDNHPKTSRVHLIVQVSPKIVEISSDISINEGNNISLT
        80        90       100       110       120       130       

              40        50         60        70        80        90
pF1KE6 CLATGKPEPSISWRHISPSAKPF-ENGQYLDIYGITRDQAGEYECSAENDVSFPDVRKVK
       :.:::.:::...::::::.:  :  . .::.: ::::.:.:.::::: :::. : ::.::
XP_016 CIATGRPEPTVTWRHISPKAVGFVSEDEYLEIQGITREQSGDYECSASNDVAAPVVRRVK
       140       150       160       170       180       190       

              100       110       120       130       140       150
pF1KE6 VVVNFAPTIQEIKSGTVTPGRSGLIRCEGAGVPPPAFEWYKGEKKLFNGQQGIIIQNFST
       :.::. : :.: :.  :  :..: ..::...::   :.::: .:.:..:..:. ..:   
XP_016 VTVNYPPYISEAKGTGVPVGQKGTLQCEASAVPSAEFQWYKDDKRLIEGKKGVKVENRPF
       200       210       220       230       240       250       

              160       170       180       190       200       210
pF1KE6 RSILTVTNVTQEHFGNYTCVAANKLGTTNASLPLNPPSTAQYGITGSADVLFSCWYLVLT
        : :   ::... .:::::::.:::: ::::. :  :....   .:..      : : : 
XP_016 LSKLIFFNVSEHDYGNYTCVASNKLGHTNASIMLFGPGAVSEVSNGTSRRAGCVWLLPLL
       260       270       280       290       300       310       

              220      
pF1KE6 LSSFTSIFYLKNAILQ
                       
XP_016 VLHLLLKF        
       320             




226 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 15:04:56 2016 done: Tue Nov  8 15:04:57 2016
 Total Scan time:  5.450 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com