FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5545, 388 aa 1>>>pF1KE5545 388 - 388 aa - 388 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.9732+/-0.000852; mu= 14.3331+/- 0.051 mean_var=91.4361+/-18.207, 0's: 0 Z-trim(108.6): 15 B-trim: 0 in 0/51 Lambda= 0.134127 statistics sampled from 10325 (10335) to 10325 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.697), E-opt: 0.2 (0.317), width: 16 Scan time: 2.710 The best scores are: opt bits E(32554) CCDS54201.1 UBXN6 gene_id:80700|Hs108|chr19 ( 388) 2520 497.7 7.6e-141 CCDS12129.1 UBXN6 gene_id:80700|Hs108|chr19 ( 441) 2520 497.7 8.4e-141 >>CCDS54201.1 UBXN6 gene_id:80700|Hs108|chr19 (388 aa) initn: 2520 init1: 2520 opt: 2520 Z-score: 2642.1 bits: 497.7 E(32554): 7.6e-141 Smith-Waterman score: 2520; 100.0% identity (100.0% similar) in 388 aa overlap (1-388:1-388) 10 20 30 40 50 60 pF1KE5 MAAAAALARLEQKQSRAWGPTSQDTIRNQVRKELQAEATVSGSPEAPGTNVVSEPREEGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 MAAAAALARLEQKQSRAWGPTSQDTIRNQVRKELQAEATVSGSPEAPGTNVVSEPREEGS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 AHLAVPGVYFTCPLTGATLRKDQRDACIKEAILLHFSTDPVAASIMKIYTFNKDQDRVKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 AHLAVPGVYFTCPLTGATLRKDQRDACIKEAILLHFSTDPVAASIMKIYTFNKDQDRVKL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 GVDTIAKYLDNIHLHPEEEKYRKIKLQNKVFQERINCLEGTHEFFEAIGFQKVLLPAQDQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 GVDTIAKYLDNIHLHPEEEKYRKIKLQNKVFQERINCLEGTHEFFEAIGFQKVLLPAQDQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 EDPEEFYVLSETTLAQPQSLERHKEQLLAAEPVRAKLDRQRRVFQPSPLASQFELPGDFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 EDPEEFYVLSETTLAQPQSLERHKEQLLAAEPVRAKLDRQRRVFQPSPLASQFELPGDFF 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 NLTAEEIKREQRLRSEAVERLSVLRTKAMREKEEQRGLRKYNYTLLRVRLPDGCLLQGTF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 NLTAEEIKREQRLRSEAVERLSVLRTKAMREKEEQRGLRKYNYTLLRVRLPDGCLLQGTF 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 YARERLGAVYGFVREALQSDWLPFELLASGGQKLSEDENLALNECGLVPSALLTFSWDMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 YARERLGAVYGFVREALQSDWLPFELLASGGQKLSEDENLALNECGLVPSALLTFSWDMA 310 320 330 340 350 360 370 380 pF1KE5 VLEDIKAAGAEPDSILKPELLSAIEKLL :::::::::::::::::::::::::::: CCDS54 VLEDIKAAGAEPDSILKPELLSAIEKLL 370 380 >>CCDS12129.1 UBXN6 gene_id:80700|Hs108|chr19 (441 aa) initn: 2520 init1: 2520 opt: 2520 Z-score: 2641.3 bits: 497.7 E(32554): 8.4e-141 Smith-Waterman score: 2520; 100.0% identity (100.0% similar) in 388 aa overlap (1-388:54-441) 10 20 30 pF1KE5 MAAAAALARLEQKQSRAWGPTSQDTIRNQV :::::::::::::::::::::::::::::: CCDS12 KESVGEKAHKEKPNQPAPRPPRQGPTNEAQMAAAAALARLEQKQSRAWGPTSQDTIRNQV 30 40 50 60 70 80 40 50 60 70 80 90 pF1KE5 RKELQAEATVSGSPEAPGTNVVSEPREEGSAHLAVPGVYFTCPLTGATLRKDQRDACIKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 RKELQAEATVSGSPEAPGTNVVSEPREEGSAHLAVPGVYFTCPLTGATLRKDQRDACIKE 90 100 110 120 130 140 100 110 120 130 140 150 pF1KE5 AILLHFSTDPVAASIMKIYTFNKDQDRVKLGVDTIAKYLDNIHLHPEEEKYRKIKLQNKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 AILLHFSTDPVAASIMKIYTFNKDQDRVKLGVDTIAKYLDNIHLHPEEEKYRKIKLQNKV 150 160 170 180 190 200 160 170 180 190 200 210 pF1KE5 FQERINCLEGTHEFFEAIGFQKVLLPAQDQEDPEEFYVLSETTLAQPQSLERHKEQLLAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 FQERINCLEGTHEFFEAIGFQKVLLPAQDQEDPEEFYVLSETTLAQPQSLERHKEQLLAA 210 220 230 240 250 260 220 230 240 250 260 270 pF1KE5 EPVRAKLDRQRRVFQPSPLASQFELPGDFFNLTAEEIKREQRLRSEAVERLSVLRTKAMR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 EPVRAKLDRQRRVFQPSPLASQFELPGDFFNLTAEEIKREQRLRSEAVERLSVLRTKAMR 270 280 290 300 310 320 280 290 300 310 320 330 pF1KE5 EKEEQRGLRKYNYTLLRVRLPDGCLLQGTFYARERLGAVYGFVREALQSDWLPFELLASG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 EKEEQRGLRKYNYTLLRVRLPDGCLLQGTFYARERLGAVYGFVREALQSDWLPFELLASG 330 340 350 360 370 380 340 350 360 370 380 pF1KE5 GQKLSEDENLALNECGLVPSALLTFSWDMAVLEDIKAAGAEPDSILKPELLSAIEKLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 GQKLSEDENLALNECGLVPSALLTFSWDMAVLEDIKAAGAEPDSILKPELLSAIEKLL 390 400 410 420 430 440 388 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 01:41:18 2016 done: Tue Nov 8 01:41:18 2016 Total Scan time: 2.710 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]