Result of FASTA (omim) for pFN21AE6679
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6679, 328 aa
  1>>>pF1KE6679     328 - 328 aa - 328 aa
Library: /omim/omim.rfq.tfa
  64369986 residues in 92320 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.2675+/-0.000409; mu= 2.3651+/- 0.026
 mean_var=375.3669+/-75.746, 0's: 0 Z-trim(123.2): 358  B-trim: 720 in 1/54
 Lambda= 0.066198
 statistics sampled from 43990 (44403) to 43990 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.771), E-opt: 0.2 (0.481), width:  16
 Scan time:  4.340

The best scores are:                                      opt bits E(92320)
NP_001842 (OMIM: 120210,614134,614135) collagen al ( 921) 2295 233.0   2e-60
XP_011533731 (OMIM: 120210,614134,614135) collagen ( 931) 2295 233.0   2e-60
XP_016865735 (OMIM: 120210,614134,614135) collagen ( 748) 1055 114.5 7.9e-25
NP_511040 (OMIM: 120210,614134,614135) collagen al ( 678)  473 58.8   4e-08
XP_011533732 (OMIM: 120210,614134,614135) collagen ( 688)  473 58.8   4e-08
XP_006710428 (OMIM: 120260,600204,614284) collagen ( 689)  355 47.6  0.0001
NP_001843 (OMIM: 120260,600204,614284) collagen al ( 689)  355 47.6  0.0001
XP_016855821 (OMIM: 120260,600204,614284) collagen ( 693)  355 47.6  0.0001
XP_016883155 (OMIM: 120270,600969,603932) collagen ( 486)  315 43.6  0.0011
XP_011526847 (OMIM: 120270,600969,603932) collagen ( 552)  315 43.6  0.0012
NP_001844 (OMIM: 120270,600969,603932) collagen al ( 684)  315 43.7  0.0014
XP_016867233 (OMIM: 608927) collagen alpha-1(XXVI) ( 311)  301 42.0  0.0022
XP_016867234 (OMIM: 608927) collagen alpha-1(XXVI) ( 311)  301 42.0  0.0022
XP_016867232 (OMIM: 608927) collagen alpha-1(XXVI) ( 429)  301 42.1  0.0027
NP_597714 (OMIM: 608927) collagen alpha-1(XXVI) ch ( 439)  301 42.2  0.0027
NP_001265492 (OMIM: 608927) collagen alpha-1(XXVI) ( 441)  301 42.2  0.0027
XP_011528177 (OMIM: 608926) EMI domain-containing  ( 307)  291 41.0  0.0042
XP_016884078 (OMIM: 608926) EMI domain-containing  ( 397)  293 41.3  0.0043
XP_011528176 (OMIM: 608926) EMI domain-containing  ( 397)  293 41.3  0.0043
XP_011528175 (OMIM: 608926) EMI domain-containing  ( 420)  293 41.4  0.0045
XP_011528174 (OMIM: 608926) EMI domain-containing  ( 423)  293 41.4  0.0045
XP_011528172 (OMIM: 608926) EMI domain-containing  ( 438)  293 41.4  0.0046
XP_011528171 (OMIM: 608926) EMI domain-containing  ( 460)  293 41.4  0.0047
XP_011528170 (OMIM: 608926) EMI domain-containing  ( 462)  293 41.4  0.0047
XP_011528173 (OMIM: 608926) EMI domain-containing  ( 434)  291 41.2  0.0052
XP_011528178 (OMIM: 608926) EMI domain-containing  ( 283)  284 40.3  0.0064


>>NP_001842 (OMIM: 120210,614134,614135) collagen alpha-  (921 aa)
 initn: 2294 init1: 2294 opt: 2295  Z-score: 1206.4  bits: 233.0 E(92320): 2e-60
Smith-Waterman score: 2295; 99.1% identity (99.4% similar) in 330 aa overlap (1-328:1-330)

               10        20        30        40        50        60
pF1KE6 MKTCWKIPVFFFVCSFLEPWASAAVKRRPRFPVNSNSNGGNELCPKIRIGQDDLPGFDLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKTCWKIPVFFFVCSFLEPWASAAVKRRPRFPVNSNSNGGNELCPKIRIGQDDLPGFDLI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 SQFQVDKAASRRAIQRVVGSATLQVAYKLGNNVDFRIPTRNLYPSGLPEEYSFLTTFRMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQFQVDKAASRRAIQRVVGSATLQVAYKLGNNVDFRIPTRNLYPSGLPEEYSFLTTFRMT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 GSTLKKNWNIWQIQDSSGKEQVGIKINGQTQSVVFSYKGLDGSLQTAAFSNLSSLFDSQW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSTLKKNWNIWQIQDSSGKEQVGIKINGQTQSVVFSYKGLDGSLQTAAFSNLSSLFDSQW
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 HKIMIGVERSSATLFVDCNRIESLPIKPRGPIDIDGFAVLGKLADNPQVSVPFELQWMLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HKIMIGVERSSATLFVDCNRIESLPIKPRGPIDIDGFAVLGKLADNPQVSVPFELQWMLI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 HCDPLRPRRETCHELPARITPSQTTDERGPPGEQGPPGPPGPPGVPGIDGIDGDRGPKGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HCDPLRPRRETCHELPARITPSQTTDERGPPGEQGPPGPPGPPGVPGIDGIDGDRGPKGP
              250       260       270       280       290       300

              310       320                                        
pF1KE6 PGPPGPAGEPGKPGAPGKPGTPGAD--TSP                              
       :::::::::::::::::::::::::  :.:                              
NP_001 PGPPGPAGEPGKPGAPGKPGTPGADGLTGPDGSPGSIGSKGQKGEPGVPGSRGFPGRGIP
              310       320       330       340       350       360

>>XP_011533731 (OMIM: 120210,614134,614135) collagen alp  (931 aa)
 initn: 2294 init1: 2294 opt: 2295  Z-score: 1206.3  bits: 233.0 E(92320): 2e-60
Smith-Waterman score: 2295; 99.1% identity (99.4% similar) in 330 aa overlap (1-328:1-330)

               10        20        30        40        50        60
pF1KE6 MKTCWKIPVFFFVCSFLEPWASAAVKRRPRFPVNSNSNGGNELCPKIRIGQDDLPGFDLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MKTCWKIPVFFFVCSFLEPWASAAVKRRPRFPVNSNSNGGNELCPKIRIGQDDLPGFDLI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 SQFQVDKAASRRAIQRVVGSATLQVAYKLGNNVDFRIPTRNLYPSGLPEEYSFLTTFRMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SQFQVDKAASRRAIQRVVGSATLQVAYKLGNNVDFRIPTRNLYPSGLPEEYSFLTTFRMT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 GSTLKKNWNIWQIQDSSGKEQVGIKINGQTQSVVFSYKGLDGSLQTAAFSNLSSLFDSQW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GSTLKKNWNIWQIQDSSGKEQVGIKINGQTQSVVFSYKGLDGSLQTAAFSNLSSLFDSQW
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 HKIMIGVERSSATLFVDCNRIESLPIKPRGPIDIDGFAVLGKLADNPQVSVPFELQWMLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HKIMIGVERSSATLFVDCNRIESLPIKPRGPIDIDGFAVLGKLADNPQVSVPFELQWMLI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 HCDPLRPRRETCHELPARITPSQTTDERGPPGEQGPPGPPGPPGVPGIDGIDGDRGPKGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HCDPLRPRRETCHELPARITPSQTTDERGPPGEQGPPGPPGPPGVPGIDGIDGDRGPKGP
              250       260       270       280       290       300

              310       320                                        
pF1KE6 PGPPGPAGEPGKPGAPGKPGTPGAD--TSP                              
       :::::::::::::::::::::::::  :.:                              
XP_011 PGPPGPAGEPGKPGAPGKPGTPGADGLTGPDGSPGSIGSKGQKGEPGVPGSRGFPGRGIP
              310       320       330       340       350       360

>>XP_016865735 (OMIM: 120210,614134,614135) collagen alp  (748 aa)
 initn: 1054 init1: 1054 opt: 1055  Z-score: 567.4  bits: 114.5 E(92320): 7.9e-25
Smith-Waterman score: 1055; 98.0% identity (98.6% similar) in 147 aa overlap (184-328:1-147)

           160       170       180       190       200       210   
pF1KE6 VFSYKGLDGSLQTAAFSNLSSLFDSQWHKIMIGVERSSATLFVDCNRIESLPIKPRGPID
                                     ::::::::::::::::::::::::::::::
XP_016                               MIGVERSSATLFVDCNRIESLPIKPRGPID
                                             10        20        30

           220       230       240       250       260       270   
pF1KE6 IDGFAVLGKLADNPQVSVPFELQWMLIHCDPLRPRRETCHELPARITPSQTTDERGPPGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IDGFAVLGKLADNPQVSVPFELQWMLIHCDPLRPRRETCHELPARITPSQTTDERGPPGE
               40        50        60        70        80        90

           280       290       300       310       320             
pF1KE6 QGPPGPPGPPGVPGIDGIDGDRGPKGPPGPPGPAGEPGKPGAPGKPGTPGAD--TSP   
       ::::::::::::::::::::::::::::::::::::::::::::::::::::  :.:   
XP_016 QGPPGPPGPPGVPGIDGIDGDRGPKGPPGPPGPAGEPGKPGAPGKPGTPGADGLTGPDGS
              100       110       120       130       140       150

XP_016 PGSIGSKGQKGEPGVPGSRGFPGRGIPGPPGPPGTAGLPGELGRVGPVGDPGRRGPPGPP
              160       170       180       190       200       210

>>NP_511040 (OMIM: 120210,614134,614135) collagen alpha-  (678 aa)
 initn: 472 init1: 472 opt: 473  Z-score: 267.4  bits: 58.8 E(92320): 4e-08
Smith-Waterman score: 473; 93.8% identity (96.9% similar) in 64 aa overlap (267-328:24-87)

        240       250       260       270       280       290      
pF1KE6 WMLIHCDPLRPRRETCHELPARITPSQTTDERGPPGEQGPPGPPGPPGVPGIDGIDGDRG
                                     .:::::::::::::::::::::::::::::
NP_511        MAWTARDRGALGLLLLGLCLCAAQRGPPGEQGPPGPPGPPGVPGIDGIDGDRG
                      10        20        30        40        50   

        300       310       320                                    
pF1KE6 PKGPPGPPGPAGEPGKPGAPGKPGTPGAD--TSP                          
       :::::::::::::::::::::::::::::  :.:                          
NP_511 PKGPPGPPGPAGEPGKPGAPGKPGTPGADGLTGPDGSPGSIGSKGQKGEPGVPGSRGFPG
            60        70        80        90       100       110   

NP_511 RGIPGPPGPPGTAGLPGELGRVGPVGDPGRRGPPGPPGPPGPRGTIGFHDGDPLCPNACP
           120       130       140       150       160       170   

>>XP_011533732 (OMIM: 120210,614134,614135) collagen alp  (688 aa)
 initn: 472 init1: 472 opt: 473  Z-score: 267.4  bits: 58.8 E(92320): 4e-08
Smith-Waterman score: 473; 93.8% identity (96.9% similar) in 64 aa overlap (267-328:24-87)

        240       250       260       270       280       290      
pF1KE6 WMLIHCDPLRPRRETCHELPARITPSQTTDERGPPGEQGPPGPPGPPGVPGIDGIDGDRG
                                     .:::::::::::::::::::::::::::::
XP_011        MAWTARDRGALGLLLLGLCLCAAQRGPPGEQGPPGPPGPPGVPGIDGIDGDRG
                      10        20        30        40        50   

        300       310       320                                    
pF1KE6 PKGPPGPPGPAGEPGKPGAPGKPGTPGAD--TSP                          
       :::::::::::::::::::::::::::::  :.:                          
XP_011 PKGPPGPPGPAGEPGKPGAPGKPGTPGADGLTGPDGSPGSIGSKGQKGEPGVPGSRGFPG
            60        70        80        90       100       110   

XP_011 RGIPGPPGPPGTAGLPGELGRVGPVGDPGRRGPPGPPGPPGPRGTIGFHDGDPLCPNACP
           120       130       140       150       160       170   

>>XP_006710428 (OMIM: 120260,600204,614284) collagen alp  (689 aa)
 initn: 809 init1: 355 opt: 355  Z-score: 206.5  bits: 47.6 E(92320): 0.0001
Smith-Waterman score: 355; 75.9% identity (77.6% similar) in 58 aa overlap (268-325:26-83)

       240       250       260       270       280       290       
pF1KE6 MLIHCDPLRPRRETCHELPARITPSQTTDERGPPGEQGPPGPPGPPGVPGIDGIDGDRGP
                                     ::::::.::::::::::::: :::::: ::
XP_006      MAAATASPRSLLVLLQVVVLALAQIRGPPGERGPPGPPGPPGVPGSDGIDGDNGP
                    10        20        30        40        50     

       300       310       320                                     
pF1KE6 KGPPGPPGPAGEPGKPGAPGKPGTPGADTSP                             
        :  ::::: ::::: :  :  : :: :                                
XP_006 PGKAGPPGPKGEPGKAGPDGPDGKPGIDGLTGAKGEPGPMGIPGVKGQPGLPGPPGLPGP
          60        70        80        90       100       110     

>>NP_001843 (OMIM: 120260,600204,614284) collagen alpha-  (689 aa)
 initn: 809 init1: 355 opt: 355  Z-score: 206.5  bits: 47.6 E(92320): 0.0001
Smith-Waterman score: 355; 75.9% identity (77.6% similar) in 58 aa overlap (268-325:26-83)

       240       250       260       270       280       290       
pF1KE6 MLIHCDPLRPRRETCHELPARITPSQTTDERGPPGEQGPPGPPGPPGVPGIDGIDGDRGP
                                     ::::::.::::::::::::: :::::: ::
NP_001      MAAATASPRSLLVLLQVVVLALAQIRGPPGERGPPGPPGPPGVPGSDGIDGDNGP
                    10        20        30        40        50     

       300       310       320                                     
pF1KE6 KGPPGPPGPAGEPGKPGAPGKPGTPGADTSP                             
        :  ::::: ::::: :  :  : :: :                                
NP_001 PGKAGPPGPKGEPGKAGPDGPDGKPGIDGLTGAKGEPGPMGIPGVKGQPGLPGPPGLPGP
          60        70        80        90       100       110     

>>XP_016855821 (OMIM: 120260,600204,614284) collagen alp  (693 aa)
 initn: 809 init1: 355 opt: 355  Z-score: 206.4  bits: 47.6 E(92320): 0.0001
Smith-Waterman score: 355; 75.9% identity (77.6% similar) in 58 aa overlap (268-325:26-83)

       240       250       260       270       280       290       
pF1KE6 MLIHCDPLRPRRETCHELPARITPSQTTDERGPPGEQGPPGPPGPPGVPGIDGIDGDRGP
                                     ::::::.::::::::::::: :::::: ::
XP_016      MAAATASPRSLLVLLQVVVLALAQIRGPPGERGPPGPPGPPGVPGSDGIDGDNGP
                    10        20        30        40        50     

       300       310       320                                     
pF1KE6 KGPPGPPGPAGEPGKPGAPGKPGTPGADTSP                             
        :  ::::: ::::: :  :  : :: :                                
XP_016 PGKAGPPGPKGEPGKAGPDGPDGKPGIDGLTGAKGEPGPMGIPGVKGQPGLPGPPGLPGP
          60        70        80        90       100       110     

>>XP_016883155 (OMIM: 120270,600969,603932) collagen alp  (486 aa)
 initn: 808 init1: 312 opt: 315  Z-score: 187.5  bits: 43.6 E(92320): 0.0011
Smith-Waterman score: 315; 70.2% identity (75.4% similar) in 57 aa overlap (272-325:29-85)

             250       260       270       280       290       300 
pF1KE6 CDPLRPRRETCHELPARITPSQTTDERGPPGEQGPPGPPGPPGVPGIDGIDGDRGPKGPP
                                     :  :::::::::: :: :::::. :: : :
XP_016   MAGPRACAPLLLLLLLGELLAAAGAQRVGLPGPPGPPGPPGKPGQDGIDGEAGPPGLP
                 10        20        30        40        50        

             310          320                                      
pF1KE6 GPPGPAGEPGKPGAPGK---PGTPGADTSP                              
       ::::: : ::::: ::.   :: ::.:                                 
XP_016 GPPGPKGAPGKPGKPGEAGLPGLPGVDGLTGRDGPPGPKGAPGERGSLGPPGPPGLGGKG
       60        70        80        90       100       110        

>>XP_011526847 (OMIM: 120270,600969,603932) collagen alp  (552 aa)
 initn: 1029 init1: 312 opt: 315  Z-score: 186.9  bits: 43.6 E(92320): 0.0012
Smith-Waterman score: 315; 70.2% identity (75.4% similar) in 57 aa overlap (272-325:29-85)

             250       260       270       280       290       300 
pF1KE6 CDPLRPRRETCHELPARITPSQTTDERGPPGEQGPPGPPGPPGVPGIDGIDGDRGPKGPP
                                     :  :::::::::: :: :::::. :: : :
XP_011   MAGPRACAPLLLLLLLGELLAAAGAQRVGLPGPPGPPGPPGKPGQDGIDGEAGPPGLP
                 10        20        30        40        50        

             310          320                                      
pF1KE6 GPPGPAGEPGKPGAPGK---PGTPGADTSP                              
       ::::: : ::::: ::.   :: ::.:                                 
XP_011 GPPGPKGAPGKPGKPGEAGLPGLPGVDGLTGRDGPPGPKGAPGERGSLGPPGPPGLGGKG
       60        70        80        90       100       110        




328 residues in 1 query   sequences
64369986 residues in 92320 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Oct 24 21:35:16 2019 done: Thu Oct 24 21:35:17 2019
 Total Scan time:  4.340 Total Display time:  0.050

Function used was FASTA [36.3.4 Apr, 2011]
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