Result of FASTA (omim) for pFN21AE5272
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5272, 177 aa
  1>>>pF1KE5272 177 - 177 aa - 177 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9396+/-0.000345; mu= 14.8942+/- 0.021
 mean_var=60.9582+/-12.014, 0's: 0 Z-trim(114.0): 13  B-trim: 0 in 0/51
 Lambda= 0.164270
 statistics sampled from 23674 (23680) to 23674 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.672), E-opt: 0.2 (0.278), width:  16
 Scan time:  4.500

The best scores are:                                      opt bits E(85289)
NP_005083 (OMIM: 603898) tumor necrosis factor lig ( 199) 1217 296.5 1.7e-80


>>NP_005083 (OMIM: 603898) tumor necrosis factor ligand   (199 aa)
 initn: 1217 init1: 1217 opt: 1217  Z-score: 1566.2  bits: 296.5 E(85289): 1.7e-80
Smith-Waterman score: 1217; 100.0% identity (100.0% similar) in 177 aa overlap (1-177:23-199)

                                     10        20        30        
pF1KE5                       MCLSHLENMPLSHSRTQGAQRSSWKLWLFCSIVMLLFL
                             ::::::::::::::::::::::::::::::::::::::
NP_005 MTLHPSPITCEFLFSTALISPKMCLSHLENMPLSHSRTQGAQRSSWKLWLFCSIVMLLFL
               10        20        30        40        50        60

       40        50        60        70        80        90        
pF1KE5 CSFSWLIFIFLQLETAKEPCMAKFGPLPSKWQMASSEPPCVNKVSDWKLEILQNGLYLIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 CSFSWLIFIFLQLETAKEPCMAKFGPLPSKWQMASSEPPCVNKVSDWKLEILQNGLYLIY
               70        80        90       100       110       120

      100       110       120       130       140       150        
pF1KE5 GQVAPNANYNDVAPFEVRLYKNKDMIQTLTNKSKIQNVGGTYELHVGDTIDLIFNSEHQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GQVAPNANYNDVAPFEVRLYKNKDMIQTLTNKSKIQNVGGTYELHVGDTIDLIFNSEHQV
              130       140       150       160       170       180

      160       170       
pF1KE5 LKNNTYWGIILLANPQFIS
       :::::::::::::::::::
NP_005 LKNNTYWGIILLANPQFIS
              190         




177 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 23:19:06 2016 done: Mon Nov  7 23:19:07 2016
 Total Scan time:  4.500 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]
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