FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5272, 177 aa 1>>>pF1KE5272 177 - 177 aa - 177 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9396+/-0.000345; mu= 14.8942+/- 0.021 mean_var=60.9582+/-12.014, 0's: 0 Z-trim(114.0): 13 B-trim: 0 in 0/51 Lambda= 0.164270 statistics sampled from 23674 (23680) to 23674 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.672), E-opt: 0.2 (0.278), width: 16 Scan time: 4.500 The best scores are: opt bits E(85289) NP_005083 (OMIM: 603898) tumor necrosis factor lig ( 199) 1217 296.5 1.7e-80 >>NP_005083 (OMIM: 603898) tumor necrosis factor ligand (199 aa) initn: 1217 init1: 1217 opt: 1217 Z-score: 1566.2 bits: 296.5 E(85289): 1.7e-80 Smith-Waterman score: 1217; 100.0% identity (100.0% similar) in 177 aa overlap (1-177:23-199) 10 20 30 pF1KE5 MCLSHLENMPLSHSRTQGAQRSSWKLWLFCSIVMLLFL :::::::::::::::::::::::::::::::::::::: NP_005 MTLHPSPITCEFLFSTALISPKMCLSHLENMPLSHSRTQGAQRSSWKLWLFCSIVMLLFL 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE5 CSFSWLIFIFLQLETAKEPCMAKFGPLPSKWQMASSEPPCVNKVSDWKLEILQNGLYLIY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 CSFSWLIFIFLQLETAKEPCMAKFGPLPSKWQMASSEPPCVNKVSDWKLEILQNGLYLIY 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE5 GQVAPNANYNDVAPFEVRLYKNKDMIQTLTNKSKIQNVGGTYELHVGDTIDLIFNSEHQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 GQVAPNANYNDVAPFEVRLYKNKDMIQTLTNKSKIQNVGGTYELHVGDTIDLIFNSEHQV 130 140 150 160 170 180 160 170 pF1KE5 LKNNTYWGIILLANPQFIS ::::::::::::::::::: NP_005 LKNNTYWGIILLANPQFIS 190 177 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 23:19:06 2016 done: Mon Nov 7 23:19:07 2016 Total Scan time: 4.500 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]