FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5292, 241 aa 1>>>pF1KE5292 241 - 241 aa - 241 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2806+/-0.00039; mu= 15.6069+/- 0.024 mean_var=81.3624+/-16.479, 0's: 0 Z-trim(112.6): 17 B-trim: 671 in 1/53 Lambda= 0.142188 statistics sampled from 21541 (21552) to 21541 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.636), E-opt: 0.2 (0.253), width: 16 Scan time: 6.120 The best scores are: opt bits E(85289) NP_001018125 (OMIM: 189960,227646,613984) Fanconi (1451) 1456 308.8 3.2e-83 NP_001306913 (OMIM: 189960,227646,613984) Fanconi (1451) 1456 308.8 3.2e-83 NP_149075 (OMIM: 189960,227646,613984) Fanconi ane (1471) 1456 308.8 3.3e-83 >>NP_001018125 (OMIM: 189960,227646,613984) Fanconi anem (1451 aa) initn: 1456 init1: 1456 opt: 1456 Z-score: 1615.0 bits: 308.8 E(85289): 3.2e-83 Smith-Waterman score: 1456; 100.0% identity (100.0% similar) in 231 aa overlap (1-231:1-231) 10 20 30 40 50 60 pF1KE5 MVSKRRLSKSEDKESLTEDASKTRKQPLSKKTKKSHIANEVEENDSIFVKLLKISGIILK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MVSKRRLSKSEDKESLTEDASKTRKQPLSKKTKKSHIANEVEENDSIFVKLLKISGIILK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 TGESQNQLAVDQIAFQKKLFQTLRRHPSYPKIIEEFVSGLESYIEDEDSFRNCLLSCERL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TGESQNQLAVDQIAFQKKLFQTLRRHPSYPKIIEEFVSGLESYIEDEDSFRNCLLSCERL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 QDEEASMGASYSKSLIKLLLGIDILQPAIIKTLFEKLPEYFFENKNSDEINIPRLIVSQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QDEEASMGASYSKSLIKLLLGIDILQPAIIKTLFEKLPEYFFENKNSDEINIPRLIVSQL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 KWLDRVVDGKDLTTKIMQLISIAPENLQHDIITSLPEILGDSQHADVGKELRWINPLSSS ::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KWLDRVVDGKDLTTKIMQLISIAPENLQHDIITSLPEILGDSQHADVGKELSDLLIENTS 190 200 210 220 230 240 pF1KE5 K NP_001 LTVPILDVLSSLRLDPNFLLKVRQLVMDKLSSIRLEDLPVIIKFILHSVTAMDTLEVISE 250 260 270 280 290 300 >>NP_001306913 (OMIM: 189960,227646,613984) Fanconi anem (1451 aa) initn: 1456 init1: 1456 opt: 1456 Z-score: 1615.0 bits: 308.8 E(85289): 3.2e-83 Smith-Waterman score: 1456; 100.0% identity (100.0% similar) in 231 aa overlap (1-231:1-231) 10 20 30 40 50 60 pF1KE5 MVSKRRLSKSEDKESLTEDASKTRKQPLSKKTKKSHIANEVEENDSIFVKLLKISGIILK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MVSKRRLSKSEDKESLTEDASKTRKQPLSKKTKKSHIANEVEENDSIFVKLLKISGIILK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 TGESQNQLAVDQIAFQKKLFQTLRRHPSYPKIIEEFVSGLESYIEDEDSFRNCLLSCERL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TGESQNQLAVDQIAFQKKLFQTLRRHPSYPKIIEEFVSGLESYIEDEDSFRNCLLSCERL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 QDEEASMGASYSKSLIKLLLGIDILQPAIIKTLFEKLPEYFFENKNSDEINIPRLIVSQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QDEEASMGASYSKSLIKLLLGIDILQPAIIKTLFEKLPEYFFENKNSDEINIPRLIVSQL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 KWLDRVVDGKDLTTKIMQLISIAPENLQHDIITSLPEILGDSQHADVGKELRWINPLSSS ::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KWLDRVVDGKDLTTKIMQLISIAPENLQHDIITSLPEILGDSQHADVGKELSDLLIENTS 190 200 210 220 230 240 pF1KE5 K NP_001 LTVPILDVLSSLRLDPNFLLKVRQLVMDKLSSIRLEDLPVIIKFILHSVTAMDTLEVISE 250 260 270 280 290 300 >>NP_149075 (OMIM: 189960,227646,613984) Fanconi anemia (1471 aa) initn: 1456 init1: 1456 opt: 1456 Z-score: 1614.9 bits: 308.8 E(85289): 3.3e-83 Smith-Waterman score: 1456; 100.0% identity (100.0% similar) in 231 aa overlap (1-231:1-231) 10 20 30 40 50 60 pF1KE5 MVSKRRLSKSEDKESLTEDASKTRKQPLSKKTKKSHIANEVEENDSIFVKLLKISGIILK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_149 MVSKRRLSKSEDKESLTEDASKTRKQPLSKKTKKSHIANEVEENDSIFVKLLKISGIILK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 TGESQNQLAVDQIAFQKKLFQTLRRHPSYPKIIEEFVSGLESYIEDEDSFRNCLLSCERL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_149 TGESQNQLAVDQIAFQKKLFQTLRRHPSYPKIIEEFVSGLESYIEDEDSFRNCLLSCERL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 QDEEASMGASYSKSLIKLLLGIDILQPAIIKTLFEKLPEYFFENKNSDEINIPRLIVSQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_149 QDEEASMGASYSKSLIKLLLGIDILQPAIIKTLFEKLPEYFFENKNSDEINIPRLIVSQL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 KWLDRVVDGKDLTTKIMQLISIAPENLQHDIITSLPEILGDSQHADVGKELRWINPLSSS ::::::::::::::::::::::::::::::::::::::::::::::::::: NP_149 KWLDRVVDGKDLTTKIMQLISIAPENLQHDIITSLPEILGDSQHADVGKELSDLLIENTS 190 200 210 220 230 240 pF1KE5 K NP_149 LTVPILDVLSSLRLDPNFLLKVRQLVMDKLSSIRLEDLPVIIKFILHSVTAMDTLEVISE 250 260 270 280 290 300 241 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 23:28:09 2016 done: Mon Nov 7 23:28:09 2016 Total Scan time: 6.120 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]