FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5292, 241 aa
  1>>>pF1KE5292 241 - 241 aa - 241 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7681+/-0.000954; mu= 12.3717+/- 0.058
 mean_var=73.3730+/-14.467, 0's: 0 Z-trim(105.3): 23  B-trim: 167 in 1/52
 Lambda= 0.149729
 statistics sampled from 8342 (8352) to 8342 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.637), E-opt: 0.2 (0.257), width:  16
 Scan time:  2.060

The best scores are:                                      opt bits E(32554)
CCDS33696.1 FANCD2 gene_id:2177|Hs108|chr3         (1451) 1456 324.0 3.4e-88
CCDS2595.1 FANCD2 gene_id:2177|Hs108|chr3          (1471) 1456 324.0 3.4e-88


>>CCDS33696.1 FANCD2 gene_id:2177|Hs108|chr3              (1451 aa)
 initn: 1456 init1: 1456 opt: 1456  Z-score: 1696.9  bits: 324.0 E(32554): 3.4e-88
Smith-Waterman score: 1456; 100.0% identity (100.0% similar) in 231 aa overlap (1-231:1-231)

               10        20        30        40        50        60
pF1KE5 MVSKRRLSKSEDKESLTEDASKTRKQPLSKKTKKSHIANEVEENDSIFVKLLKISGIILK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MVSKRRLSKSEDKESLTEDASKTRKQPLSKKTKKSHIANEVEENDSIFVKLLKISGIILK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 TGESQNQLAVDQIAFQKKLFQTLRRHPSYPKIIEEFVSGLESYIEDEDSFRNCLLSCERL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TGESQNQLAVDQIAFQKKLFQTLRRHPSYPKIIEEFVSGLESYIEDEDSFRNCLLSCERL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 QDEEASMGASYSKSLIKLLLGIDILQPAIIKTLFEKLPEYFFENKNSDEINIPRLIVSQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QDEEASMGASYSKSLIKLLLGIDILQPAIIKTLFEKLPEYFFENKNSDEINIPRLIVSQL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 KWLDRVVDGKDLTTKIMQLISIAPENLQHDIITSLPEILGDSQHADVGKELRWINPLSSS
       :::::::::::::::::::::::::::::::::::::::::::::::::::         
CCDS33 KWLDRVVDGKDLTTKIMQLISIAPENLQHDIITSLPEILGDSQHADVGKELSDLLIENTS
              190       200       210       220       230       240

                                                                   
pF1KE5 K                                                           
                                                                   
CCDS33 LTVPILDVLSSLRLDPNFLLKVRQLVMDKLSSIRLEDLPVIIKFILHSVTAMDTLEVISE
              250       260       270       280       290       300

>>CCDS2595.1 FANCD2 gene_id:2177|Hs108|chr3               (1471 aa)
 initn: 1456 init1: 1456 opt: 1456  Z-score: 1696.8  bits: 324.0 E(32554): 3.4e-88
Smith-Waterman score: 1456; 100.0% identity (100.0% similar) in 231 aa overlap (1-231:1-231)

               10        20        30        40        50        60
pF1KE5 MVSKRRLSKSEDKESLTEDASKTRKQPLSKKTKKSHIANEVEENDSIFVKLLKISGIILK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 MVSKRRLSKSEDKESLTEDASKTRKQPLSKKTKKSHIANEVEENDSIFVKLLKISGIILK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 TGESQNQLAVDQIAFQKKLFQTLRRHPSYPKIIEEFVSGLESYIEDEDSFRNCLLSCERL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 TGESQNQLAVDQIAFQKKLFQTLRRHPSYPKIIEEFVSGLESYIEDEDSFRNCLLSCERL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 QDEEASMGASYSKSLIKLLLGIDILQPAIIKTLFEKLPEYFFENKNSDEINIPRLIVSQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 QDEEASMGASYSKSLIKLLLGIDILQPAIIKTLFEKLPEYFFENKNSDEINIPRLIVSQL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 KWLDRVVDGKDLTTKIMQLISIAPENLQHDIITSLPEILGDSQHADVGKELRWINPLSSS
       :::::::::::::::::::::::::::::::::::::::::::::::::::         
CCDS25 KWLDRVVDGKDLTTKIMQLISIAPENLQHDIITSLPEILGDSQHADVGKELSDLLIENTS
              190       200       210       220       230       240

                                                                   
pF1KE5 K                                                           
                                                                   
CCDS25 LTVPILDVLSSLRLDPNFLLKVRQLVMDKLSSIRLEDLPVIIKFILHSVTAMDTLEVISE
              250       260       270       280       290       300




241 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 23:28:08 2016 done: Mon Nov  7 23:28:08 2016
 Total Scan time:  2.060 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]