FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6277, 224 aa 1>>>pF1KE6277 224 - 224 aa - 224 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.0945+/-0.0007; mu= 11.3466+/- 0.042 mean_var=95.1168+/-19.089, 0's: 0 Z-trim(112.5): 7 B-trim: 0 in 0/50 Lambda= 0.131506 statistics sampled from 13221 (13226) to 13221 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.78), E-opt: 0.2 (0.406), width: 16 Scan time: 1.510 The best scores are: opt bits E(32554) CCDS5379.1 NUPL2 gene_id:11097|Hs108|chr7 ( 423) 1405 276.1 2.4e-74 >>CCDS5379.1 NUPL2 gene_id:11097|Hs108|chr7 (423 aa) initn: 1405 init1: 1405 opt: 1405 Z-score: 1448.2 bits: 276.1 E(32554): 2.4e-74 Smith-Waterman score: 1405; 100.0% identity (100.0% similar) in 203 aa overlap (1-203:1-203) 10 20 30 40 50 60 pF1KE6 MAICQFFLQGRCRFGDRCWNEHPGARGAGGGRQQPQQQPSGNNRRGWNTTSQRYSNVIQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 MAICQFFLQGRCRFGDRCWNEHPGARGAGGGRQQPQQQPSGNNRRGWNTTSQRYSNVIQP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 SSFSKSTPWGGSRDQEKPYFSSFDSGASTNRKEGFGLSENPFASLSPDEQKDEKKLLEGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 SSFSKSTPWGGSRDQEKPYFSSFDSGASTNRKEGFGLSENPFASLSPDEQKDEKKLLEGI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 VKDMEVWESSGQWMFSVYSPVKKKPNISGFTDISPEELRLEYHNFLTSNNLQSYLNSVQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 VKDMEVWESSGQWMFSVYSPVKKKPNISGFTDISPEELRLEYHNFLTSNNLQSYLNSVQR 130 140 150 160 170 180 190 200 210 220 pF1KE6 LINQWRNRVNELKSLNISTKVALKCLWKIYTHLSPKIYGPDCAL ::::::::::::::::::::::: CCDS53 LINQWRNRVNELKSLNISTKVALLSDVKDGVNQAAPAFGFGSSQAATFMSPGFPVNNSSS 190 200 210 220 230 240 224 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:43:06 2016 done: Tue Nov 8 11:43:06 2016 Total Scan time: 1.510 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]