FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6171, 83 aa 1>>>pF1KE6171 83 - 83 aa - 83 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8479+/-0.000293; mu= 9.7055+/- 0.018 mean_var=47.4015+/- 9.516, 0's: 0 Z-trim(116.1): 5 B-trim: 0 in 0/54 Lambda= 0.186285 statistics sampled from 26963 (26968) to 26963 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.732), E-opt: 0.2 (0.316), width: 16 Scan time: 2.610 The best scores are: opt bits E(85289) NP_001856 (OMIM: 123996) cytochrome c oxidase subu ( 115) 512 144.5 2.5e-35 NP_001855 (OMIM: 123995) cytochrome c oxidase subu ( 79) 287 84.0 2.9e-17 NP_001305966 (OMIM: 605771) cytochrome c oxidase s ( 111) 220 66.0 1e-11 NP_004709 (OMIM: 605771) cytochrome c oxidase subu ( 114) 220 66.0 1.1e-11 NP_001305965 (OMIM: 605771) cytochrome c oxidase s ( 114) 220 66.0 1.1e-11 >>NP_001856 (OMIM: 123996) cytochrome c oxidase subunit (115 aa) initn: 512 init1: 512 opt: 512 Z-score: 755.1 bits: 144.5 E(85289): 2.5e-35 Smith-Waterman score: 512; 98.8% identity (98.8% similar) in 83 aa overlap (1-83:33-115) 10 20 30 pF1KE6 MLWNLLALRQIGQRTISTASRRHFKNKVPE :: ::::::::::::::::::::::::::: NP_001 TQDSEVVPVPAWPFSLVVFSCGGCWSVTAKMLRNLLALRQIGQRTISTASRRHFKNKVPE 10 20 30 40 50 60 40 50 60 70 80 pF1KE6 KQKLFQEDDEIPLYLKGGVADALLYRATMILTVGGTAYAIYELAVASFPKKQE ::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KQKLFQEDDEIPLYLKGGVADALLYRATMILTVGGTAYAIYELAVASFPKKQE 70 80 90 100 110 >>NP_001855 (OMIM: 123995) cytochrome c oxidase subunit (79 aa) initn: 245 init1: 239 opt: 287 Z-score: 431.0 bits: 84.0 E(85289): 2.9e-17 Smith-Waterman score: 287; 56.4% identity (83.3% similar) in 78 aa overlap (5-80:1-78) 10 20 30 40 50 pF1KE6 MLWNLLALR--QIGQRTISTASRRHFKNKVPEKQKLFQEDDEIPLYLKGGVADALLYRAT . ::: : :..:...: .:.:.: :::::::::..::::::::..: .:::.: NP_001 MQALRVSQALIRSFSSTARNRFQNRVREKQKLFQEDNDIPLYLKGGIVDNILYRVT 10 20 30 40 50 60 70 80 pF1KE6 MILTVGGTAYAIYELAVASFPKKQE : : .:::.:..: :. ::::. NP_001 MTLCLGGTVYSLYSLGWASFPRN 60 70 >>NP_001305966 (OMIM: 605771) cytochrome c oxidase subun (111 aa) initn: 220 init1: 220 opt: 220 Z-score: 331.3 bits: 66.0 E(85289): 1e-11 Smith-Waterman score: 220; 58.6% identity (77.6% similar) in 58 aa overlap (25-82:54-111) 10 20 30 40 50 pF1KE6 MLWNLLALRQIGQRTISTASRRHFKNKVPEKQKLFQEDDEIPLYLKGGVADALL :::::: ::.::. : .:.::: :. : .: NP_001 KPVVSTEAPPIIFATPTKLTSDSTVYDYAGKNKVPELQKFFQKADGVPVYLKRGLPDQML 30 40 50 60 70 80 60 70 80 pF1KE6 YRATMILTVGGTAYAIYELAVASFPKKQE ::.:: :::::: : . : .:: ::.. NP_001 YRTTMALTVGGTIYCLIALYMASQPKNK 90 100 110 >>NP_004709 (OMIM: 605771) cytochrome c oxidase subunit (114 aa) initn: 220 init1: 220 opt: 220 Z-score: 331.1 bits: 66.0 E(85289): 1.1e-11 Smith-Waterman score: 220; 58.6% identity (77.6% similar) in 58 aa overlap (25-82:57-114) 10 20 30 40 50 pF1KE6 MLWNLLALRQIGQRTISTASRRHFKNKVPEKQKLFQEDDEIPLYLKGGVADALL :::::: ::.::. : .:.::: :. : .: NP_004 KPVVSTEAPPIIFATPTKLTSDSTVYDYAGKNKVPELQKFFQKADGVPVYLKRGLPDQML 30 40 50 60 70 80 60 70 80 pF1KE6 YRATMILTVGGTAYAIYELAVASFPKKQE ::.:: :::::: : . : .:: ::.. NP_004 YRTTMALTVGGTIYCLIALYMASQPKNK 90 100 110 >>NP_001305965 (OMIM: 605771) cytochrome c oxidase subun (114 aa) initn: 220 init1: 220 opt: 220 Z-score: 331.1 bits: 66.0 E(85289): 1.1e-11 Smith-Waterman score: 220; 58.6% identity (77.6% similar) in 58 aa overlap (25-82:57-114) 10 20 30 40 50 pF1KE6 MLWNLLALRQIGQRTISTASRRHFKNKVPEKQKLFQEDDEIPLYLKGGVADALL :::::: ::.::. : .:.::: :. : .: NP_001 KPVVSTEAPPIIFATPTKLTSDSTVYDYAGKNKVPELQKFFQKADGVPVYLKRGLPDQML 30 40 50 60 70 80 60 70 80 pF1KE6 YRATMILTVGGTAYAIYELAVASFPKKQE ::.:: :::::: : . : .:: ::.. NP_001 YRTTMALTVGGTIYCLIALYMASQPKNK 90 100 110 83 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 10:03:10 2016 done: Tue Nov 8 10:03:10 2016 Total Scan time: 2.610 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]