Result of FASTA (omim) for pFN21AE6171
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6171, 83 aa
  1>>>pF1KE6171 83 - 83 aa - 83 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8479+/-0.000293; mu= 9.7055+/- 0.018
 mean_var=47.4015+/- 9.516, 0's: 0 Z-trim(116.1): 5  B-trim: 0 in 0/54
 Lambda= 0.186285
 statistics sampled from 26963 (26968) to 26963 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.732), E-opt: 0.2 (0.316), width:  16
 Scan time:  2.610

The best scores are:                                      opt bits E(85289)
NP_001856 (OMIM: 123996) cytochrome c oxidase subu ( 115)  512 144.5 2.5e-35
NP_001855 (OMIM: 123995) cytochrome c oxidase subu (  79)  287 84.0 2.9e-17
NP_001305966 (OMIM: 605771) cytochrome c oxidase s ( 111)  220 66.0   1e-11
NP_004709 (OMIM: 605771) cytochrome c oxidase subu ( 114)  220 66.0 1.1e-11
NP_001305965 (OMIM: 605771) cytochrome c oxidase s ( 114)  220 66.0 1.1e-11


>>NP_001856 (OMIM: 123996) cytochrome c oxidase subunit   (115 aa)
 initn: 512 init1: 512 opt: 512  Z-score: 755.1  bits: 144.5 E(85289): 2.5e-35
Smith-Waterman score: 512; 98.8% identity (98.8% similar) in 83 aa overlap (1-83:33-115)

                                             10        20        30
pF1KE6                               MLWNLLALRQIGQRTISTASRRHFKNKVPE
                                     :: :::::::::::::::::::::::::::
NP_001 TQDSEVVPVPAWPFSLVVFSCGGCWSVTAKMLRNLLALRQIGQRTISTASRRHFKNKVPE
             10        20        30        40        50        60  

               40        50        60        70        80   
pF1KE6 KQKLFQEDDEIPLYLKGGVADALLYRATMILTVGGTAYAIYELAVASFPKKQE
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KQKLFQEDDEIPLYLKGGVADALLYRATMILTVGGTAYAIYELAVASFPKKQE
             70        80        90       100       110     

>>NP_001855 (OMIM: 123995) cytochrome c oxidase subunit   (79 aa)
 initn: 245 init1: 239 opt: 287  Z-score: 431.0  bits: 84.0 E(85289): 2.9e-17
Smith-Waterman score: 287; 56.4% identity (83.3% similar) in 78 aa overlap (5-80:1-78)

                 10        20        30        40        50        
pF1KE6 MLWNLLALR--QIGQRTISTASRRHFKNKVPEKQKLFQEDDEIPLYLKGGVADALLYRAT
           . :::  :   :..:...: .:.:.: :::::::::..::::::::..: .:::.:
NP_001     MQALRVSQALIRSFSSTARNRFQNRVREKQKLFQEDNDIPLYLKGGIVDNILYRVT
                   10        20        30        40        50      

       60        70        80   
pF1KE6 MILTVGGTAYAIYELAVASFPKKQE
       : : .:::.:..: :. ::::.   
NP_001 MTLCLGGTVYSLYSLGWASFPRN  
         60        70           

>>NP_001305966 (OMIM: 605771) cytochrome c oxidase subun  (111 aa)
 initn: 220 init1: 220 opt: 220  Z-score: 331.3  bits: 66.0 E(85289): 1e-11
Smith-Waterman score: 220; 58.6% identity (77.6% similar) in 58 aa overlap (25-82:54-111)

                     10        20        30        40        50    
pF1KE6       MLWNLLALRQIGQRTISTASRRHFKNKVPEKQKLFQEDDEIPLYLKGGVADALL
                                     :::::: ::.::. : .:.::: :. : .:
NP_001 KPVVSTEAPPIIFATPTKLTSDSTVYDYAGKNKVPELQKFFQKADGVPVYLKRGLPDQML
            30        40        50        60        70        80   

           60        70        80   
pF1KE6 YRATMILTVGGTAYAIYELAVASFPKKQE
       ::.:: :::::: : .  : .:: ::.. 
NP_001 YRTTMALTVGGTIYCLIALYMASQPKNK 
            90       100       110  

>>NP_004709 (OMIM: 605771) cytochrome c oxidase subunit   (114 aa)
 initn: 220 init1: 220 opt: 220  Z-score: 331.1  bits: 66.0 E(85289): 1.1e-11
Smith-Waterman score: 220; 58.6% identity (77.6% similar) in 58 aa overlap (25-82:57-114)

                     10        20        30        40        50    
pF1KE6       MLWNLLALRQIGQRTISTASRRHFKNKVPEKQKLFQEDDEIPLYLKGGVADALL
                                     :::::: ::.::. : .:.::: :. : .:
NP_004 KPVVSTEAPPIIFATPTKLTSDSTVYDYAGKNKVPELQKFFQKADGVPVYLKRGLPDQML
         30        40        50        60        70        80      

           60        70        80   
pF1KE6 YRATMILTVGGTAYAIYELAVASFPKKQE
       ::.:: :::::: : .  : .:: ::.. 
NP_004 YRTTMALTVGGTIYCLIALYMASQPKNK 
         90       100       110     

>>NP_001305965 (OMIM: 605771) cytochrome c oxidase subun  (114 aa)
 initn: 220 init1: 220 opt: 220  Z-score: 331.1  bits: 66.0 E(85289): 1.1e-11
Smith-Waterman score: 220; 58.6% identity (77.6% similar) in 58 aa overlap (25-82:57-114)

                     10        20        30        40        50    
pF1KE6       MLWNLLALRQIGQRTISTASRRHFKNKVPEKQKLFQEDDEIPLYLKGGVADALL
                                     :::::: ::.::. : .:.::: :. : .:
NP_001 KPVVSTEAPPIIFATPTKLTSDSTVYDYAGKNKVPELQKFFQKADGVPVYLKRGLPDQML
         30        40        50        60        70        80      

           60        70        80   
pF1KE6 YRATMILTVGGTAYAIYELAVASFPKKQE
       ::.:: :::::: : .  : .:: ::.. 
NP_001 YRTTMALTVGGTIYCLIALYMASQPKNK 
         90       100       110     




83 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:03:10 2016 done: Tue Nov  8 10:03:10 2016
 Total Scan time:  2.610 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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