FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6171, 83 aa 1>>>pF1KE6171 83 - 83 aa - 83 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0177+/-0.000582; mu= 8.5762+/- 0.035 mean_var=46.6951+/- 9.236, 0's: 0 Z-trim(109.4): 4 B-trim: 0 in 0/52 Lambda= 0.187689 statistics sampled from 10866 (10869) to 10866 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.748), E-opt: 0.2 (0.334), width: 16 Scan time: 1.300 The best scores are: opt bits E(32554) CCDS34486.2 COX7A2 gene_id:1347|Hs108|chr6 ( 115) 512 145.5 4.9e-36 CCDS12490.1 COX7A1 gene_id:1346|Hs108|chr19 ( 79) 287 84.5 7.5e-18 CCDS1808.1 COX7A2L gene_id:9167|Hs108|chr2 ( 114) 220 66.4 3.1e-12 >>CCDS34486.2 COX7A2 gene_id:1347|Hs108|chr6 (115 aa) initn: 512 init1: 512 opt: 512 Z-score: 760.4 bits: 145.5 E(32554): 4.9e-36 Smith-Waterman score: 512; 98.8% identity (98.8% similar) in 83 aa overlap (1-83:33-115) 10 20 30 pF1KE6 MLWNLLALRQIGQRTISTASRRHFKNKVPE :: ::::::::::::::::::::::::::: CCDS34 TQDSEVVPVPAWPFSLVVFSCGGCWSVTAKMLRNLLALRQIGQRTISTASRRHFKNKVPE 10 20 30 40 50 60 40 50 60 70 80 pF1KE6 KQKLFQEDDEIPLYLKGGVADALLYRATMILTVGGTAYAIYELAVASFPKKQE ::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 KQKLFQEDDEIPLYLKGGVADALLYRATMILTVGGTAYAIYELAVASFPKKQE 70 80 90 100 110 >>CCDS12490.1 COX7A1 gene_id:1346|Hs108|chr19 (79 aa) initn: 245 init1: 239 opt: 287 Z-score: 433.9 bits: 84.5 E(32554): 7.5e-18 Smith-Waterman score: 287; 56.4% identity (83.3% similar) in 78 aa overlap (5-80:1-78) 10 20 30 40 50 pF1KE6 MLWNLLALR--QIGQRTISTASRRHFKNKVPEKQKLFQEDDEIPLYLKGGVADALLYRAT . ::: : :..:...: .:.:.: :::::::::..::::::::..: .:::.: CCDS12 MQALRVSQALIRSFSSTARNRFQNRVREKQKLFQEDNDIPLYLKGGIVDNILYRVT 10 20 30 40 50 60 70 80 pF1KE6 MILTVGGTAYAIYELAVASFPKKQE : : .:::.:..: :. ::::. CCDS12 MTLCLGGTVYSLYSLGWASFPRN 60 70 >>CCDS1808.1 COX7A2L gene_id:9167|Hs108|chr2 (114 aa) initn: 220 init1: 220 opt: 220 Z-score: 333.2 bits: 66.4 E(32554): 3.1e-12 Smith-Waterman score: 220; 58.6% identity (77.6% similar) in 58 aa overlap (25-82:57-114) 10 20 30 40 50 pF1KE6 MLWNLLALRQIGQRTISTASRRHFKNKVPEKQKLFQEDDEIPLYLKGGVADALL :::::: ::.::. : .:.::: :. : .: CCDS18 KPVVSTEAPPIIFATPTKLTSDSTVYDYAGKNKVPELQKFFQKADGVPVYLKRGLPDQML 30 40 50 60 70 80 60 70 80 pF1KE6 YRATMILTVGGTAYAIYELAVASFPKKQE ::.:: :::::: : . : .:: ::.. CCDS18 YRTTMALTVGGTIYCLIALYMASQPKNK 90 100 110 83 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 10:03:09 2016 done: Tue Nov 8 10:03:10 2016 Total Scan time: 1.300 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]