Result of FASTA (omim) for
pFN21AE6192
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6192, 83 aa
1>>>pF1KE6192 83 - 83 aa - 83 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3796+/-0.000274; mu= 6.9199+/- 0.017
mean_var=48.7811+/- 9.525, 0's: 0 Z-trim(118.4): 10 B-trim: 0 in 0/54
Lambda= 0.183632
statistics sampled from 31298 (31307) to 31298 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.777), E-opt: 0.2 (0.367), width: 16
Scan time: 2.590
The best scores are: opt bits E(85289)
NP_001305723 (OMIM: 123864) cytochrome c oxidase s ( 139) 510 142.0 1.7e-34
NP_001305717 (OMIM: 123864) cytochrome c oxidase s ( 140) 510 142.0 1.8e-34
NP_001852 (OMIM: 123864) cytochrome c oxidase subu ( 169) 510 142.0 2.1e-34
NP_001305715 (OMIM: 123864) cytochrome c oxidase s ( 169) 510 142.0 2.1e-34
NP_001305726 (OMIM: 123864) cytochrome c oxidase s ( 131) 275 79.8 9.1e-16
XP_005260638 (OMIM: 607976,612714) PREDICTED: cyto ( 127) 127 40.6 0.00056
XP_005260637 (OMIM: 607976,612714) PREDICTED: cyto ( 132) 126 40.3 0.0007
NP_115998 (OMIM: 607976,612714) cytochrome c oxida ( 171) 127 40.6 0.00075
XP_005260636 (OMIM: 607976,612714) PREDICTED: cyto ( 176) 126 40.3 0.00093
>>NP_001305723 (OMIM: 123864) cytochrome c oxidase subun (139 aa)
initn: 510 init1: 510 opt: 510 Z-score: 740.1 bits: 142.0 E(85289): 1.7e-34
Smith-Waterman score: 510; 100.0% identity (100.0% similar) in 80 aa overlap (1-80:1-80)
10 20 30 40 50 60
pF1KE6 MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQK
10 20 30 40 50 60
70 80
pF1KE6 ALKEKEKASWSSLSMDEKVECGY
::::::::::::::::::::
NP_001 ALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMW
70 80 90 100 110 120
>>NP_001305717 (OMIM: 123864) cytochrome c oxidase subun (140 aa)
initn: 510 init1: 510 opt: 510 Z-score: 740.0 bits: 142.0 E(85289): 1.8e-34
Smith-Waterman score: 510; 100.0% identity (100.0% similar) in 80 aa overlap (1-80:1-80)
10 20 30 40 50 60
pF1KE6 MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQK
10 20 30 40 50 60
70 80
pF1KE6 ALKEKEKASWSSLSMDEKVECGY
::::::::::::::::::::
NP_001 ALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMW
70 80 90 100 110 120
>>NP_001852 (OMIM: 123864) cytochrome c oxidase subunit (169 aa)
initn: 510 init1: 510 opt: 510 Z-score: 738.6 bits: 142.0 E(85289): 2.1e-34
Smith-Waterman score: 510; 100.0% identity (100.0% similar) in 80 aa overlap (1-80:1-80)
10 20 30 40 50 60
pF1KE6 MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQK
10 20 30 40 50 60
70 80
pF1KE6 ALKEKEKASWSSLSMDEKVECGY
::::::::::::::::::::
NP_001 ALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMW
70 80 90 100 110 120
>>NP_001305715 (OMIM: 123864) cytochrome c oxidase subun (169 aa)
initn: 510 init1: 510 opt: 510 Z-score: 738.6 bits: 142.0 E(85289): 2.1e-34
Smith-Waterman score: 510; 100.0% identity (100.0% similar) in 80 aa overlap (1-80:1-80)
10 20 30 40 50 60
pF1KE6 MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQK
10 20 30 40 50 60
70 80
pF1KE6 ALKEKEKASWSSLSMDEKVECGY
::::::::::::::::::::
NP_001 ALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMW
70 80 90 100 110 120
>>NP_001305726 (OMIM: 123864) cytochrome c oxidase subun (131 aa)
initn: 275 init1: 275 opt: 275 Z-score: 404.1 bits: 79.8 E(85289): 9.1e-16
Smith-Waterman score: 275; 100.0% identity (100.0% similar) in 42 aa overlap (39-80:1-42)
10 20 30 40 50 60
pF1KE6 LVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKA
::::::::::::::::::::::::::::::
NP_001 MDRRDHPLPEVAHVKHLSASQKALKEKEKA
10 20 30
70 80
pF1KE6 SWSSLSMDEKVECGY
::::::::::::
NP_001 SWSSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGP
40 50 60 70 80 90
>>XP_005260638 (OMIM: 607976,612714) PREDICTED: cytochro (127 aa)
initn: 126 init1: 126 opt: 127 Z-score: 192.4 bits: 40.6 E(85289): 0.00056
Smith-Waterman score: 127; 31.7% identity (65.9% similar) in 82 aa overlap (1-79:1-81)
10 20 30 40 50
pF1KE6 MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMD---RRDHPLPEVAHVKHLSA
:: ..::: ... . ... :..... .. : . .: .:.:: .:.:
XP_005 MLPRAAWSLVLRKGGGGRRGMHSSEGTTRGGG-KMSPYTNCYAQRYYPMPEEPFCTELNA
10 20 30 40 50
60 70 80
pF1KE6 SQKALKEKEKASWSSLSMDEKVECGY
..:::::::.::..:. :::
XP_005 EEQALKEKEKGSWTQLTHAEKVALFPPKPITLTDERKAQQLQRMLDMKVNPVQGLASRWD
60 70 80 90 100 110
>>XP_005260637 (OMIM: 607976,612714) PREDICTED: cytochro (132 aa)
initn: 126 init1: 126 opt: 126 Z-score: 190.7 bits: 40.3 E(85289): 0.0007
Smith-Waterman score: 126; 48.7% identity (76.9% similar) in 39 aa overlap (41-79:48-86)
20 30 40 50 60 70
pF1KE6 GKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASW
.: .:.:: .:.: ..:::::::.::
XP_005 LLGPRSSFSRKWSARARGGGKMSPYTNCYAQRYYPMPEEPFCTELNAEEQALKEKEKGSW
20 30 40 50 60 70
80
pF1KE6 SSLSMDEKVECGY
..:. :::
XP_005 TQLTHAEKVALFPPKPITLTDERKAQQLQRMLDMKVNPVQGLASRWDYEKKQWKK
80 90 100 110 120 130
>>NP_115998 (OMIM: 607976,612714) cytochrome c oxidase s (171 aa)
initn: 126 init1: 126 opt: 127 Z-score: 190.1 bits: 40.6 E(85289): 0.00075
Smith-Waterman score: 127; 31.7% identity (65.9% similar) in 82 aa overlap (1-79:1-81)
10 20 30 40 50
pF1KE6 MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMD---RRDHPLPEVAHVKHLSA
:: ..::: ... . ... :..... .. : . .: .:.:: .:.:
NP_115 MLPRAAWSLVLRKGGGGRRGMHSSEGTTRGGG-KMSPYTNCYAQRYYPMPEEPFCTELNA
10 20 30 40 50
60 70 80
pF1KE6 SQKALKEKEKASWSSLSMDEKVECGY
..:::::::.::..:. :::
NP_115 EEQALKEKEKGSWTQLTHAEKVALYRLQFNETFAEMNRRSNEWKTVMGCVFFFIGFAALV
60 70 80 90 100 110
>>XP_005260636 (OMIM: 607976,612714) PREDICTED: cytochro (176 aa)
initn: 126 init1: 126 opt: 126 Z-score: 188.5 bits: 40.3 E(85289): 0.00093
Smith-Waterman score: 126; 48.7% identity (76.9% similar) in 39 aa overlap (41-79:48-86)
20 30 40 50 60 70
pF1KE6 GKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASW
.: .:.:: .:.: ..:::::::.::
XP_005 LLGPRSSFSRKWSARARGGGKMSPYTNCYAQRYYPMPEEPFCTELNAEEQALKEKEKGSW
20 30 40 50 60 70
80
pF1KE6 SSLSMDEKVECGY
..:. :::
XP_005 TQLTHAEKVALYRLQFNETFAEMNRRSNEWKTVMGCVFFFIGFAALVIWWQRVYVFPPKP
80 90 100 110 120 130
83 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 10:13:41 2016 done: Tue Nov 8 10:13:42 2016
Total Scan time: 2.590 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]