Result of FASTA (ccds) for pFN21AB5882
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5882, 496 aa
  1>>>pF1KB5882 496 - 496 aa - 496 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9897+/-0.000746; mu= 13.5700+/- 0.045
 mean_var=180.9963+/-36.403, 0's: 0 Z-trim(115.7): 15  B-trim: 166 in 1/52
 Lambda= 0.095332
 statistics sampled from 16209 (16224) to 16209 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.8), E-opt: 0.2 (0.498), width:  16
 Scan time:  3.850

The best scores are:                                      opt bits E(32554)
CCDS10221.1 SMAD6 gene_id:4091|Hs108|chr15         ( 496) 3485 491.2 1.1e-138
CCDS11936.1 SMAD7 gene_id:4092|Hs108|chr18         ( 426) 1112 164.8 1.7e-40
CCDS59317.1 SMAD7 gene_id:4092|Hs108|chr18         ( 425) 1110 164.5 2.1e-40
CCDS54186.1 SMAD7 gene_id:4092|Hs108|chr18         ( 211)  781 118.9 5.4e-27
CCDS11934.1 SMAD2 gene_id:4087|Hs108|chr18         ( 467)  396 66.3   8e-11


>>CCDS10221.1 SMAD6 gene_id:4091|Hs108|chr15              (496 aa)
 initn: 3485 init1: 3485 opt: 3485  Z-score: 2603.5  bits: 491.2 E(32554): 1.1e-138
Smith-Waterman score: 3485; 100.0% identity (100.0% similar) in 496 aa overlap (1-496:1-496)

               10        20        30        40        50        60
pF1KB5 MFRSKRSGLVRRLWRSRVVPDREEGGSGGGGGGDEDGSLGSRAEPAPRAREGGGCGRSEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MFRSKRSGLVRRLWRSRVVPDREEGGSGGGGGGDEDGSLGSRAEPAPRAREGGGCGRSEV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 RPVAPRRPRDAVGQRGAQGAGRRRRAGGPPRPMSEPGAGAGSSLLDVAEPGGPGWLPESD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RPVAPRRPRDAVGQRGAQGAGRRRRAGGPPRPMSEPGAGAGSSLLDVAEPGGPGWLPESD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 CETVTCCLFSERDAAGAPRDASDPLAGAALEPAGGGRSREARSRLLLLEQELKTVTYSLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 CETVTCCLFSERDAAGAPRDASDPLAGAALEPAGGGRSREARSRLLLLEQELKTVTYSLL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 KRLKERSLDTLLEAVESRGGVPGGCVLVPRADLRLGGQPAPPQLLLGRLFRWPDLQHAVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KRLKERSLDTLLEAVESRGGVPGGCVLVPRADLRLGGQPAPPQLLLGRLFRWPDLQHAVE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 LKPLCGCHSFAAAADGPTVCCNPYHFSRLCGPESPPPPYSRLSPRDEYKPLDLSDSTLSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LKPLCGCHSFAAAADGPTVCCNPYHFSRLCGPESPPPPYSRLSPRDEYKPLDLSDSTLSY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 TETEATNSLITAPGEFSDASMSPDATKPSHWCSVAYWEHRTRVGRLYAVYDQAVSIFYDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TETEATNSLITAPGEFSDASMSPDATKPSHWCSVAYWEHRTRVGRLYAVYDQAVSIFYDL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 PQGSGFCLGQLNLEQRSESVRRTRSKIGFGILLSKEPDGVWAYNRGEHPIFVNSPTLDAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PQGSGFCLGQLNLEQRSESVRRTRSKIGFGILLSKEPDGVWAYNRGEHPIFVNSPTLDAP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 GGRALVVRKVPPGYSIKVFDFERSGLQHAPEPDAADGPYDPNSVRISFAKGWGPCYSRQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GGRALVVRKVPPGYSIKVFDFERSGLQHAPEPDAADGPYDPNSVRISFAKGWGPCYSRQF
              430       440       450       460       470       480

              490      
pF1KB5 ITSCPCWLEILLNNPR
       ::::::::::::::::
CCDS10 ITSCPCWLEILLNNPR
              490      

>>CCDS11936.1 SMAD7 gene_id:4092|Hs108|chr18              (426 aa)
 initn: 1307 init1: 559 opt: 1112  Z-score: 840.4  bits: 164.8 E(32554): 1.7e-40
Smith-Waterman score: 1289; 45.7% identity (64.5% similar) in 512 aa overlap (1-494:1-425)

               10        20           30        40        50       
pF1KB5 MFRSKRSGLVRRLWRSRVVP---DREEGGSGGGGGGDEDGSLGSRAEPAPRAREGGGCGR
       :::.:::.:::::::::. :   :.:::..::::::.       :.: :  .:       
CCDS11 MFRTKRSALVRRLWRSRA-PGGEDEEEGAGGGGGGGEL------RGEGATDSR-------
               10         20        30              40             

        60        70        80        90       100       110       
pF1KB5 SEVRPVAPRRPRDAVGQRGAQGAGRRRRAGGPPRPMSEPGAGAGSSLLDVAEPGGPGWLP
                          :.:::    .::: :      ::                  
CCDS11 -------------------AHGAG----GGGPGR------AG------------------
                            50                                     

       120       130       140       150       160       170       
pF1KB5 ESDCETVTCCLFSERDAAGAPRDASDPLAGAALEPAGGGRSREARSRLLLLEQELKTVTY
               ::: .   .: . .    : :::.   :::.            : .::..:.
CCDS11 --------CCLGKAVRGAKGHHHPHPPAAGAG--AAGGA------------EADLKALTH
              60        70        80                      90       

       180       190       200        210        220               
pF1KB5 SLLKRLKERSLDTLLEAVESRGGVPGGCVLVP-RADLRLG-GQPA------PPQ-----L
       :.::.::::.:. ::.:::::::.  .:.:.: : : ::: : ::      ::.     :
CCDS11 SVLKKLKERQLELLLQAVESRGGTRTACLLLPGRLDCRLGPGAPAGAQPAQPPSSYSLPL
       100       110       120       130       140       150       

          230       240       250       260       270       280    
pF1KB5 LLGRLFRWPDLQHAVELKPLCGCHSFAAAADGPTVCCNPYHFSRLCGPESPPPPYSRLSP
       :: ..::::::.:. :.: :: :.:..   .   :::::.:.::::  :::::::::  :
CCDS11 LLCKVFRWPDLRHSSEVKRLCCCESYGKI-NPELVCCNPHHLSRLCELESPPPPYSRY-P
       160       170       180        190       200       210      

          290        300       310       320       330       340   
pF1KB5 RDEYKPL-DLSDSTLSYTETEATNSLITAPGEFSDASMSPDATKPSHWCSVAYWEHRTRV
        :  ::  :  :.. : .:: .:: :  ::: .::...  .    :::: :::::..:::
CCDS11 MDFLKPTADCPDAVPSSAETGGTNYL--APGGLSDSQLLLEPGDRSHWCVVAYWEEKTRV
         220       230       240         250       260       270   

           350       360       370       380       390       400   
pF1KB5 GRLYAVYDQAVSIFYDLPQGSGFCLGQLNLEQRSESVRRTRSKIGFGILLSKEPDGVWAY
       :::: : . ...::::::::.:::::::: ...:. :...::::: :: :..: ::::.:
CCDS11 GRLYCVQEPSLDIFYDLPQGNGFCLGQLNSDNKSQLVQKVRSKIGCGIQLTREVDGVWVY
           280       290       300       310       320       330   

           410       420       430       440        450       460  
pF1KB5 NRGEHPIFVNSPTLDAPGGRALVVRKVPPGYSIKVFDFERS-GLQHAPEPDAADGPYDPN
       ::. .:::..: ::: : .:.:.:.:: ::.:::.::.:.. .::.  . .  . :.   
CCDS11 NRSSYPIFIKSATLDNPDSRTLLVHKVFPGFSIKAFDYEKAYSLQRPNDHEFMQQPWTGF
           340       350       360       370       380       390   

            470       480       490      
pF1KB5 SVRISFAKGWGPCYSRQFITSCPCWLEILLNNPR
       .:.:::.:::: ::.::::.:::::::...:.  
CCDS11 TVQISFVKGWGQCYTRQFISSCPCWLEVIFNSR 
           400       410       420       

>>CCDS59317.1 SMAD7 gene_id:4092|Hs108|chr18              (425 aa)
 initn: 1174 init1: 558 opt: 1110  Z-score: 839.0  bits: 164.5 E(32554): 2.1e-40
Smith-Waterman score: 1301; 45.8% identity (64.6% similar) in 511 aa overlap (1-494:1-424)

               10        20           30        40        50       
pF1KB5 MFRSKRSGLVRRLWRSRVVP---DREEGGSGGGGGGDEDGSLGSRAEPAPRAREGGGCGR
       :::.:::.:::::::::. :   :.:::..::::::.       :.: :  .:       
CCDS59 MFRTKRSALVRRLWRSRA-PGGEDEEEGAGGGGGGGEL------RGEGATDSR-------
               10         20        30              40             

        60        70        80        90       100       110       
pF1KB5 SEVRPVAPRRPRDAVGQRGAQGAGRRRRAGGPPRPMSEPGAGAGSSLLDVAEPGGPGWLP
                          :.:::    .::: :      ::                  
CCDS59 -------------------AHGAG----GGGPGR------AG------------------
                            50                                     

       120       130       140       150       160       170       
pF1KB5 ESDCETVTCCLFSERDAAGAPRDASDPLAGAALEPAGGGRSREARSRLLLLEQELKTVTY
               ::: .   .: . .    : :::.   :::.            : .::..:.
CCDS59 --------CCLGKAVRGAKGHHHPHPPAAGAG--AAGGA------------EADLKALTH
              60        70        80                      90       

       180       190       200        210        220               
pF1KB5 SLLKRLKERSLDTLLEAVESRGGVPGGCVLVP-RADLRLG-GQPA------PPQ-----L
       :.::.::::.:. ::.:::::::.  .:.:.: : : ::: : ::      ::.     :
CCDS59 SVLKKLKERQLELLLQAVESRGGTRTACLLLPGRLDCRLGPGAPAGAQPAQPPSSYSLPL
       100       110       120       130       140       150       

          230       240       250       260       270       280    
pF1KB5 LLGRLFRWPDLQHAVELKPLCGCHSFAAAADGPTVCCNPYHFSRLCGPESPPPPYSRLSP
       :: ..::::::.:. :.: :: :.:..   .   :::::.:.::::  :::::::::  :
CCDS59 LLCKVFRWPDLRHSSEVKRLCCCESYGKI-NPELVCCNPHHLSRLCELESPPPPYSRY-P
       160       170       180        190       200       210      

          290       300       310       320       330       340    
pF1KB5 RDEYKPLDLSDSTLSYTETEATNSLITAPGEFSDASMSPDATKPSHWCSVAYWEHRTRVG
        :  :: :  :.. : .:: .:: :  ::: .::...  .    :::: :::::..::::
CCDS59 MDFLKPTDCPDAVPSSAETGGTNYL--APGGLSDSQLLLEPGDRSHWCVVAYWEEKTRVG
         220       230       240         250       260       270   

          350       360       370       380       390       400    
pF1KB5 RLYAVYDQAVSIFYDLPQGSGFCLGQLNLEQRSESVRRTRSKIGFGILLSKEPDGVWAYN
       ::: : . ...::::::::.:::::::: ...:. :...::::: :: :..: ::::.::
CCDS59 RLYCVQEPSLDIFYDLPQGNGFCLGQLNSDNKSQLVQKVRSKIGCGIQLTREVDGVWVYN
           280       290       300       310       320       330   

          410       420       430       440        450       460   
pF1KB5 RGEHPIFVNSPTLDAPGGRALVVRKVPPGYSIKVFDFERS-GLQHAPEPDAADGPYDPNS
       :. .:::..: ::: : .:.:.:.:: ::.:::.::.:.. .::.  . .  . :.   .
CCDS59 RSSYPIFIKSATLDNPDSRTLLVHKVFPGFSIKAFDYEKAYSLQRPNDHEFMQQPWTGFT
           340       350       360       370       380       390   

           470       480       490      
pF1KB5 VRISFAKGWGPCYSRQFITSCPCWLEILLNNPR
       :.:::.:::: ::.::::.:::::::...:.  
CCDS59 VQISFVKGWGQCYTRQFISSCPCWLEVIFNSR 
           400       410       420      

>>CCDS54186.1 SMAD7 gene_id:4092|Hs108|chr18              (211 aa)
 initn: 750 init1: 558 opt: 781  Z-score: 598.1  bits: 118.9 E(32554): 5.4e-27
Smith-Waterman score: 781; 53.6% identity (79.1% similar) in 211 aa overlap (286-494:2-210)

         260       270       280       290        300       310    
pF1KB5 GPTVCCNPYHFSRLCGPESPPPPYSRLSPRDEYKPL-DLSDSTLSYTETEATNSLITAPG
                                     :  ::  :  :.. : .:: .:: :  :::
CCDS54                              MDFLKPTADCPDAVPSSAETGGTNYL--APG
                                            10        20           

          320       330       340       350       360       370    
pF1KB5 EFSDASMSPDATKPSHWCSVAYWEHRTRVGRLYAVYDQAVSIFYDLPQGSGFCLGQLNLE
        .::...  .    :::: :::::..::::::: : . ...::::::::.:::::::: .
CCDS54 GLSDSQLLLEPGDRSHWCVVAYWEEKTRVGRLYCVQEPSLDIFYDLPQGNGFCLGQLNSD
      30        40        50        60        70        80         

          380       390       400       410       420       430    
pF1KB5 QRSESVRRTRSKIGFGILLSKEPDGVWAYNRGEHPIFVNSPTLDAPGGRALVVRKVPPGY
       ..:. :...::::: :: :..: ::::.:::. .:::..: ::: : .:.:.:.:: ::.
CCDS54 NKSQLVQKVRSKIGCGIQLTREVDGVWVYNRSSYPIFIKSATLDNPDSRTLLVHKVFPGF
      90       100       110       120       130       140         

          440        450       460       470       480       490   
pF1KB5 SIKVFDFERS-GLQHAPEPDAADGPYDPNSVRISFAKGWGPCYSRQFITSCPCWLEILLN
       :::.::.:.. .::.  . .  . :.   .:.:::.:::: ::.::::.:::::::...:
CCDS54 SIKAFDYEKAYSLQRPNDHEFMQQPWTGFTVQISFVKGWGQCYTRQFISSCPCWLEVIFN
     150       160       170       180       190       200         

          
pF1KB5 NPR
       .  
CCDS54 SR 
     210  

>>CCDS11934.1 SMAD2 gene_id:4087|Hs108|chr18              (467 aa)
 initn: 603 init1: 145 opt: 396  Z-score: 307.8  bits: 66.3 E(32554): 8e-11
Smith-Waterman score: 473; 30.3% identity (56.8% similar) in 333 aa overlap (213-495:115-445)

            190       200       210       220       230       240  
pF1KB5 LKERSLDTLLEAVESRGGVPGGCVLVPRADLRLGGQPAPPQLLLGRLFRWPDLQHAVELK
                                     :... . . :...  ::.:::::.   :::
CCDS11 WGLSTPNTIDQWDTTGLYSFSEQTRSLDGRLQVSHRKGLPHVIYCRLWRWPDLHSHHELK
           90       100       110       120       130       140    

             250       260       270                       280     
pF1KB5 PLCGC-HSFAAAADGPTVCCNPYHFSRLCGPESPP-------------PP---YSR----
        . .: ..:    :   :: ::::..:.  :  ::             ::   :..    
CCDS11 AIENCEYAFNLKKD--EVCVNPYHYQRVETPVLPPVLVPRHTEILTELPPLDDYTHSIPE
          150         160       170       180       190       200  

                    290       300           310        320         
pF1KB5 -------LSPRDEYKPLDLSDSTLSY----TETEATNSLIT-APGEFSDASMSP------
              . :...: :     . .:     .. . ..:. : .:.:.: ...::      
CCDS11 NTNFPAGIEPQSNYIPETPPPGYISEDGETSDQQLNQSMDTGSPAELSPTTLSPVNHSLD
            210       220       230       240       250       260  

               330       340       350         360       370       
pF1KB5 ----DATKPSHWCSVAYWEHRTRVGRLYAVYDQAVSI--FYDLPQGSGFCLGQLNLEQRS
             ..:. :::.::.:   :::. . . . ....  : :  ..  :::: :.  .:.
CCDS11 LQPVTYSEPAFWCSIAYYELNQRVGETFHASQPSLTVDGFTDPSNSERFCLGLLSNVNRN
            270       280       290       300       310       320  

       380       390       400       410       420        430      
pF1KB5 ESVRRTRSKIGFGILLSKEPDGVWAYNRGEHPIFVNSPTLDAPGG-RALVVRKVPPGYSI
        .:. :: .:: :. :      :.:   ..  :::.::. .   : .  .: :.::: ..
CCDS11 ATVEMTRRHIGRGVRLYYIGGEVFAECLSDSAIFVQSPNCNQRYGWHPATVCKIPPGCNL
            330       340       350       360       370       380  

        440        450       460          470       480       490  
pF1KB5 KVFDF-ERSGLQHAPEPDAADGPYDPN---SVRISFAKGWGPCYSRQFITSCPCWLEILL
       :.:.  : ..:      .. .. :. .   ..:.::.::::  : :: .:: :::.:. :
CCDS11 KIFNNQEFAALLAQSVNQGFEAVYQLTRMCTIRMSFVKGWGAEYRRQTVTSTPCWIELHL
            390       400       410       420       430       440  

                                
pF1KB5 NNPR                     
       :.:                      
CCDS11 NGPLQWLDKVLTQMGSPSVRCSSMS
            450       460       




496 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 18:41:11 2016 done: Mon Nov  7 18:41:12 2016
 Total Scan time:  3.850 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com