Result of FASTA (ccds) for pFN21AE4354
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4354, 371 aa
  1>>>pF1KE4354 371 - 371 aa - 371 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3468+/-0.000752; mu= 17.1976+/- 0.045
 mean_var=76.3188+/-15.232, 0's: 0 Z-trim(109.2): 20  B-trim: 0 in 0/52
 Lambda= 0.146811
 statistics sampled from 10741 (10755) to 10741 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.701), E-opt: 0.2 (0.33), width:  16
 Scan time:  2.590

The best scores are:                                      opt bits E(32554)
CCDS75945.1 CRLF2 gene_id:64109|Hs108|chrY         ( 371) 2553 549.9 1.3e-156
CCDS75945.1 CRLF2 gene_id:64109|Hs108|chrX         ( 371) 2553 549.9 1.3e-156
CCDS75944.1 CRLF2 gene_id:64109|Hs108|chrY         ( 259) 1782 386.5 1.4e-107
CCDS75944.1 CRLF2 gene_id:64109|Hs108|chrX         ( 259) 1782 386.5 1.4e-107


>>CCDS75945.1 CRLF2 gene_id:64109|Hs108|chrY              (371 aa)
 initn: 2553 init1: 2553 opt: 2553  Z-score: 2925.1  bits: 549.9 E(32554): 1.3e-156
Smith-Waterman score: 2553; 100.0% identity (100.0% similar) in 371 aa overlap (1-371:1-371)

               10        20        30        40        50        60
pF1KE4 MGRLVLLWGAAVFLLGGWMALGQGGAAEGVQIQIIYFNLETVQVTWNASKYSRTNLTFHY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MGRLVLLWGAAVFLLGGWMALGQGGAAEGVQIQIIYFNLETVQVTWNASKYSRTNLTFHY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 RFNGDEAYDQCTNYLLQEGHTSGCLLDAEQRDDILYFSIRNGTHPVFTASRWMVYYLKPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 RFNGDEAYDQCTNYLLQEGHTSGCLLDAEQRDDILYFSIRNGTHPVFTASRWMVYYLKPS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 SPKHVRFSWHQDAVTVTCSDLSYGDLLYEVQYRSPFDTEWQSKQENTCNVTIEGLDAEKC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SPKHVRFSWHQDAVTVTCSDLSYGDLLYEVQYRSPFDTEWQSKQENTCNVTIEGLDAEKC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 YSFWVRVKAMEDVYGPDTYPSDWSEVTCWQRGEIRDACAETPTPPKPKLSKFILISSLAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 YSFWVRVKAMEDVYGPDTYPSDWSEVTCWQRGEIRDACAETPTPPKPKLSKFILISSLAI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 LLMVSLLLLSLWKLWRVKKFLIPSVPDPKSIFPGLFEIHQGNFQEWITDTQNVAHLHKMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LLMVSLLLLSLWKLWRVKKFLIPSVPDPKSIFPGLFEIHQGNFQEWITDTQNVAHLHKMA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 GAEQESGPEEPLVVQLAKTEAESPRMLDPQTEEKEASGGSLQLPHQPLQGGDVVTIGGFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 GAEQESGPEEPLVVQLAKTEAESPRMLDPQTEEKEASGGSLQLPHQPLQGGDVVTIGGFT
              310       320       330       340       350       360

              370 
pF1KE4 FVMNDRSYVAL
       :::::::::::
CCDS75 FVMNDRSYVAL
              370 

>>CCDS75945.1 CRLF2 gene_id:64109|Hs108|chrX              (371 aa)
 initn: 2553 init1: 2553 opt: 2553  Z-score: 2925.1  bits: 549.9 E(32554): 1.3e-156
Smith-Waterman score: 2553; 100.0% identity (100.0% similar) in 371 aa overlap (1-371:1-371)

               10        20        30        40        50        60
pF1KE4 MGRLVLLWGAAVFLLGGWMALGQGGAAEGVQIQIIYFNLETVQVTWNASKYSRTNLTFHY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MGRLVLLWGAAVFLLGGWMALGQGGAAEGVQIQIIYFNLETVQVTWNASKYSRTNLTFHY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 RFNGDEAYDQCTNYLLQEGHTSGCLLDAEQRDDILYFSIRNGTHPVFTASRWMVYYLKPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 RFNGDEAYDQCTNYLLQEGHTSGCLLDAEQRDDILYFSIRNGTHPVFTASRWMVYYLKPS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 SPKHVRFSWHQDAVTVTCSDLSYGDLLYEVQYRSPFDTEWQSKQENTCNVTIEGLDAEKC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SPKHVRFSWHQDAVTVTCSDLSYGDLLYEVQYRSPFDTEWQSKQENTCNVTIEGLDAEKC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 YSFWVRVKAMEDVYGPDTYPSDWSEVTCWQRGEIRDACAETPTPPKPKLSKFILISSLAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 YSFWVRVKAMEDVYGPDTYPSDWSEVTCWQRGEIRDACAETPTPPKPKLSKFILISSLAI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 LLMVSLLLLSLWKLWRVKKFLIPSVPDPKSIFPGLFEIHQGNFQEWITDTQNVAHLHKMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LLMVSLLLLSLWKLWRVKKFLIPSVPDPKSIFPGLFEIHQGNFQEWITDTQNVAHLHKMA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 GAEQESGPEEPLVVQLAKTEAESPRMLDPQTEEKEASGGSLQLPHQPLQGGDVVTIGGFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 GAEQESGPEEPLVVQLAKTEAESPRMLDPQTEEKEASGGSLQLPHQPLQGGDVVTIGGFT
              310       320       330       340       350       360

              370 
pF1KE4 FVMNDRSYVAL
       :::::::::::
CCDS75 FVMNDRSYVAL
              370 

>>CCDS75944.1 CRLF2 gene_id:64109|Hs108|chrY              (259 aa)
 initn: 1782 init1: 1782 opt: 1782  Z-score: 2044.8  bits: 386.5 E(32554): 1.4e-107
Smith-Waterman score: 1782; 100.0% identity (100.0% similar) in 259 aa overlap (113-371:1-259)

             90       100       110       120       130       140  
pF1KE4 GCLLDAEQRDDILYFSIRNGTHPVFTASRWMVYYLKPSSPKHVRFSWHQDAVTVTCSDLS
                                     ::::::::::::::::::::::::::::::
CCDS75                               MVYYLKPSSPKHVRFSWHQDAVTVTCSDLS
                                             10        20        30

            150       160       170       180       190       200  
pF1KE4 YGDLLYEVQYRSPFDTEWQSKQENTCNVTIEGLDAEKCYSFWVRVKAMEDVYGPDTYPSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 YGDLLYEVQYRSPFDTEWQSKQENTCNVTIEGLDAEKCYSFWVRVKAMEDVYGPDTYPSD
               40        50        60        70        80        90

            210       220       230       240       250       260  
pF1KE4 WSEVTCWQRGEIRDACAETPTPPKPKLSKFILISSLAILLMVSLLLLSLWKLWRVKKFLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 WSEVTCWQRGEIRDACAETPTPPKPKLSKFILISSLAILLMVSLLLLSLWKLWRVKKFLI
              100       110       120       130       140       150

            270       280       290       300       310       320  
pF1KE4 PSVPDPKSIFPGLFEIHQGNFQEWITDTQNVAHLHKMAGAEQESGPEEPLVVQLAKTEAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 PSVPDPKSIFPGLFEIHQGNFQEWITDTQNVAHLHKMAGAEQESGPEEPLVVQLAKTEAE
              160       170       180       190       200       210

            330       340       350       360       370 
pF1KE4 SPRMLDPQTEEKEASGGSLQLPHQPLQGGDVVTIGGFTFVMNDRSYVAL
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SPRMLDPQTEEKEASGGSLQLPHQPLQGGDVVTIGGFTFVMNDRSYVAL
              220       230       240       250         

>>CCDS75944.1 CRLF2 gene_id:64109|Hs108|chrX              (259 aa)
 initn: 1782 init1: 1782 opt: 1782  Z-score: 2044.8  bits: 386.5 E(32554): 1.4e-107
Smith-Waterman score: 1782; 100.0% identity (100.0% similar) in 259 aa overlap (113-371:1-259)

             90       100       110       120       130       140  
pF1KE4 GCLLDAEQRDDILYFSIRNGTHPVFTASRWMVYYLKPSSPKHVRFSWHQDAVTVTCSDLS
                                     ::::::::::::::::::::::::::::::
CCDS75                               MVYYLKPSSPKHVRFSWHQDAVTVTCSDLS
                                             10        20        30

            150       160       170       180       190       200  
pF1KE4 YGDLLYEVQYRSPFDTEWQSKQENTCNVTIEGLDAEKCYSFWVRVKAMEDVYGPDTYPSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 YGDLLYEVQYRSPFDTEWQSKQENTCNVTIEGLDAEKCYSFWVRVKAMEDVYGPDTYPSD
               40        50        60        70        80        90

            210       220       230       240       250       260  
pF1KE4 WSEVTCWQRGEIRDACAETPTPPKPKLSKFILISSLAILLMVSLLLLSLWKLWRVKKFLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 WSEVTCWQRGEIRDACAETPTPPKPKLSKFILISSLAILLMVSLLLLSLWKLWRVKKFLI
              100       110       120       130       140       150

            270       280       290       300       310       320  
pF1KE4 PSVPDPKSIFPGLFEIHQGNFQEWITDTQNVAHLHKMAGAEQESGPEEPLVVQLAKTEAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 PSVPDPKSIFPGLFEIHQGNFQEWITDTQNVAHLHKMAGAEQESGPEEPLVVQLAKTEAE
              160       170       180       190       200       210

            330       340       350       360       370 
pF1KE4 SPRMLDPQTEEKEASGGSLQLPHQPLQGGDVVTIGGFTFVMNDRSYVAL
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SPRMLDPQTEEKEASGGSLQLPHQPLQGGDVVTIGGFTFVMNDRSYVAL
              220       230       240       250         




371 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 17:06:32 2016 done: Mon Nov  7 17:06:33 2016
 Total Scan time:  2.590 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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