FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3290, 747 aa 1>>>pF1KE3290 747 - 747 aa - 747 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.2473+/-0.00101; mu= 2.3697+/- 0.061 mean_var=192.5319+/-37.907, 0's: 0 Z-trim(110.9): 17 B-trim: 29 in 1/52 Lambda= 0.092432 statistics sampled from 11951 (11961) to 11951 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.704), E-opt: 0.2 (0.367), width: 16 Scan time: 4.380 The best scores are: opt bits E(32554) CCDS13190.1 TPX2 gene_id:22974|Hs108|chr20 ( 747) 4917 668.6 9.9e-192 >>CCDS13190.1 TPX2 gene_id:22974|Hs108|chr20 (747 aa) initn: 4917 init1: 4917 opt: 4917 Z-score: 3555.6 bits: 668.6 E(32554): 9.9e-192 Smith-Waterman score: 4917; 100.0% identity (100.0% similar) in 747 aa overlap (1-747:1-747) 10 20 30 40 50 60 pF1KE3 MSQVKSSYSYDAPSDFINFSSLDDEGDTQNIDSWFEEKANLENKLLGKNGTGGLFQGKTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 MSQVKSSYSYDAPSDFINFSSLDDEGDTQNIDSWFEEKANLENKLLGKNGTGGLFQGKTP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LRKANLQQAIVTPLKPVDNTYYKEAEKENLVEQSIPSNACSSLEVEAAISRKTPAQPQRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 LRKANLQQAIVTPLKPVDNTYYKEAEKENLVEQSIPSNACSSLEVEAAISRKTPAQPQRR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 SLRLSAQKDLEQKEKHHVKMKAKRCATPVIIDEILPSKKMKVSNNKKKPEEEGSAHQDTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 SLRLSAQKDLEQKEKHHVKMKAKRCATPVIIDEILPSKKMKVSNNKKKPEEEGSAHQDTA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 EKNASSPEKAKGRHTVPCMPPAKQKFLKSTEEQELEKSMKMQQEVVEMRKKNEEFKKLAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 EKNASSPEKAKGRHTVPCMPPAKQKFLKSTEEQELEKSMKMQQEVVEMRKKNEEFKKLAL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 AGIGQPVKKSVSQVTKSVDFHFRTDERIKQHPKNQEEYKEVNFTSELRKHPSSPARVTKG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 AGIGQPVKKSVSQVTKSVDFHFRTDERIKQHPKNQEEYKEVNFTSELRKHPSSPARVTKG 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 CTIVKPFNLSQGKKRTFDETVSTYVPLAQQVEDFHKRTPNRYHLRSKKDDINLLPSKSSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 CTIVKPFNLSQGKKRTFDETVSTYVPLAQQVEDFHKRTPNRYHLRSKKDDINLLPSKSSV 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 TKICRDPQTPVLQTKHRARAVTCKSTAELEAEELEKLQQYKFKARELDPRILEGGPILPK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 TKICRDPQTPVLQTKHRARAVTCKSTAELEAEELEKLQQYKFKARELDPRILEGGPILPK 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE3 KPPVKPPTEPIGFDLEIEKRIQERESKKKTEDEHFEFHSRPCPTKILEDVVGVPEKKVLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 KPPVKPPTEPIGFDLEIEKRIQERESKKKTEDEHFEFHSRPCPTKILEDVVGVPEKKVLP 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE3 ITVPKSPAFALKNRIRMPTKEDEEEDEPVVIKAQPVPHYGVPFKPQIPEARTVEICPFSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 ITVPKSPAFALKNRIRMPTKEDEEEDEPVVIKAQPVPHYGVPFKPQIPEARTVEICPFSF 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE3 DSRDKERQLQKEKKIKELQKGEVPKFKALPLPHFDTINLPEKKVKNVTQIEPFCLETDRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 DSRDKERQLQKEKKIKELQKGEVPKFKALPLPHFDTINLPEKKVKNVTQIEPFCLETDRR 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE3 GALKAQTWKHQLEEELRQQKEAACFKARPNTVISQEPFVPKKEKKSVAEGLSGSLVQEPF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 GALKAQTWKHQLEEELRQQKEAACFKARPNTVISQEPFVPKKEKKSVAEGLSGSLVQEPF 610 620 630 640 650 660 670 680 690 700 710 720 pF1KE3 QLATEKRAKERQELEKRMAEVEAQKAQQLEEARLQEEEQKKEELARLRRELVHKANPIRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 QLATEKRAKERQELEKRMAEVEAQKAQQLEEARLQEEEQKKEELARLRRELVHKANPIRK 670 680 690 700 710 720 730 740 pF1KE3 YQGLEIKSSDQPLTVPVSPKFSTRFHC ::::::::::::::::::::::::::: CCDS13 YQGLEIKSSDQPLTVPVSPKFSTRFHC 730 740 747 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 16:50:39 2016 done: Mon Nov 7 16:50:40 2016 Total Scan time: 4.380 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]