Result of FASTA (ccds) for pFN21AE3290
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3290, 747 aa
  1>>>pF1KE3290 747 - 747 aa - 747 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.2473+/-0.00101; mu= 2.3697+/- 0.061
 mean_var=192.5319+/-37.907, 0's: 0 Z-trim(110.9): 17  B-trim: 29 in 1/52
 Lambda= 0.092432
 statistics sampled from 11951 (11961) to 11951 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.704), E-opt: 0.2 (0.367), width:  16
 Scan time:  4.380

The best scores are:                                      opt bits E(32554)
CCDS13190.1 TPX2 gene_id:22974|Hs108|chr20         ( 747) 4917 668.6 9.9e-192


>>CCDS13190.1 TPX2 gene_id:22974|Hs108|chr20              (747 aa)
 initn: 4917 init1: 4917 opt: 4917  Z-score: 3555.6  bits: 668.6 E(32554): 9.9e-192
Smith-Waterman score: 4917; 100.0% identity (100.0% similar) in 747 aa overlap (1-747:1-747)

               10        20        30        40        50        60
pF1KE3 MSQVKSSYSYDAPSDFINFSSLDDEGDTQNIDSWFEEKANLENKLLGKNGTGGLFQGKTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MSQVKSSYSYDAPSDFINFSSLDDEGDTQNIDSWFEEKANLENKLLGKNGTGGLFQGKTP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 LRKANLQQAIVTPLKPVDNTYYKEAEKENLVEQSIPSNACSSLEVEAAISRKTPAQPQRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LRKANLQQAIVTPLKPVDNTYYKEAEKENLVEQSIPSNACSSLEVEAAISRKTPAQPQRR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 SLRLSAQKDLEQKEKHHVKMKAKRCATPVIIDEILPSKKMKVSNNKKKPEEEGSAHQDTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SLRLSAQKDLEQKEKHHVKMKAKRCATPVIIDEILPSKKMKVSNNKKKPEEEGSAHQDTA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 EKNASSPEKAKGRHTVPCMPPAKQKFLKSTEEQELEKSMKMQQEVVEMRKKNEEFKKLAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EKNASSPEKAKGRHTVPCMPPAKQKFLKSTEEQELEKSMKMQQEVVEMRKKNEEFKKLAL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 AGIGQPVKKSVSQVTKSVDFHFRTDERIKQHPKNQEEYKEVNFTSELRKHPSSPARVTKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AGIGQPVKKSVSQVTKSVDFHFRTDERIKQHPKNQEEYKEVNFTSELRKHPSSPARVTKG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 CTIVKPFNLSQGKKRTFDETVSTYVPLAQQVEDFHKRTPNRYHLRSKKDDINLLPSKSSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 CTIVKPFNLSQGKKRTFDETVSTYVPLAQQVEDFHKRTPNRYHLRSKKDDINLLPSKSSV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 TKICRDPQTPVLQTKHRARAVTCKSTAELEAEELEKLQQYKFKARELDPRILEGGPILPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TKICRDPQTPVLQTKHRARAVTCKSTAELEAEELEKLQQYKFKARELDPRILEGGPILPK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE3 KPPVKPPTEPIGFDLEIEKRIQERESKKKTEDEHFEFHSRPCPTKILEDVVGVPEKKVLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KPPVKPPTEPIGFDLEIEKRIQERESKKKTEDEHFEFHSRPCPTKILEDVVGVPEKKVLP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE3 ITVPKSPAFALKNRIRMPTKEDEEEDEPVVIKAQPVPHYGVPFKPQIPEARTVEICPFSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ITVPKSPAFALKNRIRMPTKEDEEEDEPVVIKAQPVPHYGVPFKPQIPEARTVEICPFSF
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE3 DSRDKERQLQKEKKIKELQKGEVPKFKALPLPHFDTINLPEKKVKNVTQIEPFCLETDRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DSRDKERQLQKEKKIKELQKGEVPKFKALPLPHFDTINLPEKKVKNVTQIEPFCLETDRR
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE3 GALKAQTWKHQLEEELRQQKEAACFKARPNTVISQEPFVPKKEKKSVAEGLSGSLVQEPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GALKAQTWKHQLEEELRQQKEAACFKARPNTVISQEPFVPKKEKKSVAEGLSGSLVQEPF
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE3 QLATEKRAKERQELEKRMAEVEAQKAQQLEEARLQEEEQKKEELARLRRELVHKANPIRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QLATEKRAKERQELEKRMAEVEAQKAQQLEEARLQEEEQKKEELARLRRELVHKANPIRK
              670       680       690       700       710       720

              730       740       
pF1KE3 YQGLEIKSSDQPLTVPVSPKFSTRFHC
       :::::::::::::::::::::::::::
CCDS13 YQGLEIKSSDQPLTVPVSPKFSTRFHC
              730       740       




747 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 16:50:39 2016 done: Mon Nov  7 16:50:40 2016
 Total Scan time:  4.380 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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