Result of FASTA (omim) for
pFN21AE1584
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1584, 92 aa
1>>>pF1KE1584 92 - 92 aa - 92 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.6472+/-0.000265; mu= 12.4717+/- 0.017
mean_var=54.7132+/-10.777, 0's: 0 Z-trim(120.2): 66 B-trim: 169 in 1/54
Lambda= 0.173392
statistics sampled from 35171 (35252) to 35171 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.796), E-opt: 0.2 (0.413), width: 16
Scan time: 4.400
The best scores are: opt bits E(85289)
NP_002975 (OMIM: 182284) C-C motif chemokine 4 pre ( 92) 624 162.9 6.7e-41
NP_996890 (OMIM: 603782) C-C motif chemokine 4-lik ( 92) 599 156.6 5.1e-39
NP_001278397 (OMIM: 610757) C-C motif chemokine 4- ( 87) 546 143.3 4.8e-35
NP_001278401 (OMIM: 610757) C-C motif chemokine 4- ( 96) 429 114.1 3.4e-26
NP_001278400 (OMIM: 610757) C-C motif chemokine 4- ( 103) 421 112.1 1.4e-25
NP_066286 (OMIM: 601395,609423) C-C motif chemokin ( 93) 418 111.3 2.2e-25
NP_001001437 (OMIM: 609468) C-C motif chemokine 3- ( 93) 418 111.3 2.2e-25
NP_001278399 (OMIM: 610757) C-C motif chemokine 4- ( 64) 414 110.2 3.3e-25
NP_001278398 (OMIM: 610757) C-C motif chemokine 4- ( 64) 414 110.2 3.3e-25
NP_001278402 (OMIM: 610757) C-C motif chemokine 4- ( 86) 414 110.3 4.2e-25
NP_001278404 (OMIM: 610757) C-C motif chemokine 4- ( 103) 414 110.4 4.8e-25
NP_002974 (OMIM: 182283,609423) C-C motif chemokin ( 92) 395 105.6 1.2e-23
NP_002976 (OMIM: 187011) C-C motif chemokine 5 iso ( 91) 324 87.8 2.6e-18
NP_116739 (OMIM: 601392) C-C motif chemokine 14 is ( 93) 306 83.3 6e-17
NP_002979 (OMIM: 603757) C-C motif chemokine 18 pr ( 89) 282 77.3 3.7e-15
NP_116738 (OMIM: 601392) C-C motif chemokine 14 is ( 109) 280 76.9 6.2e-15
NP_005399 (OMIM: 601391) C-C motif chemokine 13 pr ( 98) 264 72.8 9.1e-14
NP_006264 (OMIM: 158106) C-C motif chemokine 7 pre ( 99) 258 71.3 2.6e-13
NP_001265665 (OMIM: 187011) C-C motif chemokine 5 ( 154) 248 69.0 2.1e-12
XP_005258077 (OMIM: 601394) PREDICTED: C-C motif c ( 120) 246 68.4 2.4e-12
NP_004581 (OMIM: 601394) C-C motif chemokine 16 pr ( 120) 246 68.4 2.4e-12
NP_005614 (OMIM: 602283) C-C motif chemokine 8 pre ( 99) 240 66.8 5.9e-12
NP_002977 (OMIM: 600807,601156,609423) eotaxin pre ( 97) 239 66.6 6.9e-12
NP_002973 (OMIM: 158105,182940,607948,609423) C-C ( 99) 233 65.1 2e-11
NP_006063 (OMIM: 604697) C-C motif chemokine 26 pr ( 94) 230 64.3 3.2e-11
XP_016867161 (OMIM: 604697) PREDICTED: C-C motif c ( 94) 230 64.3 3.2e-11
XP_016867160 (OMIM: 604697) PREDICTED: C-C motif c ( 148) 232 64.9 3.3e-11
XP_011514761 (OMIM: 602495) PREDICTED: C-C motif c ( 119) 211 59.6 1e-09
NP_002982 (OMIM: 602495) C-C motif chemokine 24 pr ( 119) 211 59.6 1e-09
XP_011514762 (OMIM: 602495) PREDICTED: C-C motif c ( 119) 211 59.6 1e-09
NP_002980 (OMIM: 602737) C-C motif chemokine 21 pr ( 134) 203 57.7 4.6e-09
XP_011516306 (OMIM: 602737) PREDICTED: C-C motif c ( 145) 203 57.7 4.9e-09
NP_005055 (OMIM: 602494) C-C motif chemokine 23 is ( 137) 199 56.7 9.4e-09
NP_665905 (OMIM: 602494) C-C motif chemokine 23 is ( 120) 196 55.9 1.4e-08
XP_016879020 (OMIM: 602957) PREDICTED: C-C motif c ( 93) 191 54.6 2.7e-08
NP_002981 (OMIM: 602957) C-C motif chemokine 22 pr ( 93) 191 54.6 2.7e-08
NP_116741 (OMIM: 601393) C-C motif chemokine 15 pr ( 113) 190 54.4 3.8e-08
NP_002972 (OMIM: 182281) C-C motif chemokine 1 pre ( 96) 183 52.6 1.1e-07
NP_006265 (OMIM: 602227) C-C motif chemokine 19 pr ( 98) 175 50.6 4.6e-07
NP_001123518 (OMIM: 601960) C-C motif chemokine 20 ( 95) 153 45.1 2e-05
NP_004582 (OMIM: 601960) C-C motif chemokine 20 is ( 96) 151 44.6 2.9e-05
NP_001278403 (OMIM: 610757) C-C motif chemokine 4- ( 68) 147 43.5 4.4e-05
NP_002987 (OMIM: 601880) fractalkine isoform 1 pre ( 397) 154 45.7 5.4e-05
NP_002978 (OMIM: 601520) C-C motif chemokine 17 pr ( 94) 147 43.6 5.7e-05
XP_011521558 (OMIM: 601520) PREDICTED: C-C motif c ( 122) 147 43.6 7e-05
XP_016879019 (OMIM: 601520) PREDICTED: C-C motif c ( 123) 147 43.6 7.1e-05
XP_011508167 (OMIM: 600250) PREDICTED: lymphotacti ( 114) 145 43.1 9.4e-05
NP_002986 (OMIM: 600250) lymphotactin precursor [H ( 114) 145 43.1 9.4e-05
NP_003166 (OMIM: 604828) cytokine SCM-1 beta precu ( 114) 141 42.1 0.00019
NP_000575 (OMIM: 146930) interleukin-8 precursor [ ( 99) 133 40.1 0.00067
>>NP_002975 (OMIM: 182284) C-C motif chemokine 4 precurs (92 aa)
initn: 624 init1: 624 opt: 624 Z-score: 855.2 bits: 162.9 E(85289): 6.7e-41
Smith-Waterman score: 624; 98.9% identity (100.0% similar) in 92 aa overlap (1-92:1-92)
10 20 30 40 50 60
pF1KE1 MKLCVTVLSLLMLVAAFCSPALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MKLCVTVLSLLMLVAAFCSPALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
10 20 30 40 50 60
70 80 90
pF1KE1 PAVVFQTKRSKQVCADPSETWVQEYVYDLELN
:::::::::::::::::::.::::::::::::
NP_002 PAVVFQTKRSKQVCADPSESWVQEYVYDLELN
70 80 90
>>NP_996890 (OMIM: 603782) C-C motif chemokine 4-like pr (92 aa)
initn: 599 init1: 599 opt: 599 Z-score: 821.4 bits: 156.6 E(85289): 5.1e-39
Smith-Waterman score: 599; 95.7% identity (98.9% similar) in 92 aa overlap (1-92:1-92)
10 20 30 40 50 60
pF1KE1 MKLCVTVLSLLMLVAAFCSPALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
:::::::::::.::::::: ::::::::::::::::::::::::::::::::::::::::
NP_996 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
10 20 30 40 50 60
70 80 90
pF1KE1 PAVVFQTKRSKQVCADPSETWVQEYVYDLELN
:::::::::.:::::::::.::::::::::::
NP_996 PAVVFQTKRGKQVCADPSESWVQEYVYDLELN
70 80 90
>>NP_001278397 (OMIM: 610757) C-C motif chemokine 4-like (87 aa)
initn: 552 init1: 414 opt: 546 Z-score: 750.1 bits: 143.3 E(85289): 4.8e-35
Smith-Waterman score: 546; 90.2% identity (93.5% similar) in 92 aa overlap (1-92:1-87)
10 20 30 40 50 60
pF1KE1 MKLCVTVLSLLMLVAAFCSPALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
:::::::::::.::::::: ::::::::::::::::::::::::::::::::::::::::
NP_001 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
10 20 30 40 50 60
70 80 90
pF1KE1 PAVVFQTKRSKQVCADPSETWVQEYVYDLELN
:::: .:::::::::.::::::::::::
NP_001 PAVV-----GKQVCADPSESWVQEYVYDLELN
70 80
>>NP_001278401 (OMIM: 610757) C-C motif chemokine 4-like (96 aa)
initn: 414 init1: 414 opt: 429 Z-score: 591.3 bits: 114.1 E(85289): 3.4e-26
Smith-Waterman score: 429; 81.5% identity (85.2% similar) in 81 aa overlap (1-81:1-81)
10 20 30 40 50 60
pF1KE1 MKLCVTVLSLLMLVAAFCSPALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
:::::::::::.::::::: ::::::::::::::::::::::::::::::::::::::::
NP_001 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
10 20 30 40 50 60
70 80 90
pF1KE1 PAVVFQTKRSKQVCADPSETWVQEYVYDLELN
:::: : .. : : :
NP_001 PAVVAAPGRIPSTRAAPHGPWSGRGRCLPQARDKAR
70 80 90
>>NP_001278400 (OMIM: 610757) C-C motif chemokine 4-like (103 aa)
initn: 421 init1: 421 opt: 421 Z-score: 580.1 bits: 112.1 E(85289): 1.4e-25
Smith-Waterman score: 421; 90.0% identity (95.7% similar) in 70 aa overlap (1-70:1-70)
10 20 30 40 50 60
pF1KE1 MKLCVTVLSLLMLVAAFCSPALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
:::::::::::.::::::: ::::::::::::::::::::::::::::::::::::::::
NP_001 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
10 20 30 40 50 60
70 80 90
pF1KE1 PAVVFQTKRSKQVCADPSETWVQEYVYDLELN
::::.. . :
NP_001 PAVVYRESASSAAPGRIPSTRAAPHGPWSGRGRCLPQARDKAR
70 80 90 100
>>NP_066286 (OMIM: 601395,609423) C-C motif chemokine 3- (93 aa)
initn: 413 init1: 378 opt: 418 Z-score: 576.7 bits: 111.3 E(85289): 2.2e-25
Smith-Waterman score: 418; 58.7% identity (90.2% similar) in 92 aa overlap (1-92:1-92)
10 20 30 40 50 60
pF1KE1 MKLCVTVLSLLMLVAAFCSPALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
:.. ...:..:. . :.:. .::::...: :::::::::.:..:.::..::.:::: ::.
NP_066 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
10 20 30 40 50 60
70 80 90
pF1KE1 PAVVFQTKRSKQVCADPSETWVQEYVYDLELN
:.:.: :::..:::::::: :::.:: ::::.
NP_066 PSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
70 80 90
>>NP_001001437 (OMIM: 609468) C-C motif chemokine 3-like (93 aa)
initn: 413 init1: 378 opt: 418 Z-score: 576.7 bits: 111.3 E(85289): 2.2e-25
Smith-Waterman score: 418; 58.7% identity (90.2% similar) in 92 aa overlap (1-92:1-92)
10 20 30 40 50 60
pF1KE1 MKLCVTVLSLLMLVAAFCSPALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
:.. ...:..:. . :.:. .::::...: :::::::::.:..:.::..::.:::: ::.
NP_001 MQVSTAALAVLLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSK
10 20 30 40 50 60
70 80 90
pF1KE1 PAVVFQTKRSKQVCADPSETWVQEYVYDLELN
:.:.: :::..:::::::: :::.:: ::::.
NP_001 PSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
70 80 90
>>NP_001278399 (OMIM: 610757) C-C motif chemokine 4-like (64 aa)
initn: 414 init1: 414 opt: 414 Z-score: 573.6 bits: 110.2 E(85289): 3.3e-25
Smith-Waterman score: 414; 96.9% identity (98.4% similar) in 64 aa overlap (1-64:1-64)
10 20 30 40 50 60
pF1KE1 MKLCVTVLSLLMLVAAFCSPALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
:::::::::::.::::::: ::::::::::::::::::::::::::::::::::::::::
NP_001 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
10 20 30 40 50 60
70 80 90
pF1KE1 PAVVFQTKRSKQVCADPSETWVQEYVYDLELN
::::
NP_001 PAVV
>>NP_001278398 (OMIM: 610757) C-C motif chemokine 4-like (64 aa)
initn: 414 init1: 414 opt: 414 Z-score: 573.6 bits: 110.2 E(85289): 3.3e-25
Smith-Waterman score: 414; 96.9% identity (98.4% similar) in 64 aa overlap (1-64:1-64)
10 20 30 40 50 60
pF1KE1 MKLCVTVLSLLMLVAAFCSPALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
:::::::::::.::::::: ::::::::::::::::::::::::::::::::::::::::
NP_001 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
10 20 30 40 50 60
70 80 90
pF1KE1 PAVVFQTKRSKQVCADPSETWVQEYVYDLELN
::::
NP_001 PAVV
>>NP_001278402 (OMIM: 610757) C-C motif chemokine 4-like (86 aa)
initn: 414 init1: 414 opt: 414 Z-score: 571.7 bits: 110.3 E(85289): 4.2e-25
Smith-Waterman score: 414; 96.9% identity (98.4% similar) in 64 aa overlap (1-64:1-64)
10 20 30 40 50 60
pF1KE1 MKLCVTVLSLLMLVAAFCSPALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
:::::::::::.::::::: ::::::::::::::::::::::::::::::::::::::::
NP_001 MKLCVTVLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ
10 20 30 40 50 60
70 80 90
pF1KE1 PAVVFQTKRSKQVCADPSETWVQEYVYDLELN
::::
NP_001 PAVVAAPHGPWSGRGRCLPQARDKAR
70 80
92 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 16:32:37 2016 done: Mon Nov 7 16:32:38 2016
Total Scan time: 4.400 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]